Query= MSMg01no548_f11.b1 MSMg01no548_f11.b1 CHROMAT_FILE:
MSMg01no548_f11.b1 PHD_FILE: MSMg01no548_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:14 2005
(521 letters)
>mm_chr3_149466347_149467267
Length = 921
Score = 920 bits (476), Expect = 0.0
Identities = 505/518 (97%), Gaps = 8/518 (1%)
Strand = Plus / Minus
Query: 5 gaattcacaggaattgcacacaccaaagccagtgaggtttccaccctatgtctccttgca 64
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaattcacaggaa-aggacacaccaaagccagtgaggtttccaccctatgtctccttgca 512
Query: 65 ccacacaggagccaggtgtcagcttcagtcaaagaaatacaatgaaaactaatttttacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ccacacaggagccaggtgtcagcttcagtcaaagaaatacaatgaaaactaatttttacc 452
Query: 125 tttgaggaatctttt-aaaattttttttctgttgaaaagtatattatacttaaaatggaa 183
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tttgaggaatcttttaaaaaatttttttctgttgaaaagtatattatacttaaaatggaa 392
Query: 184 ttgtgaagtacagcaaattctgctttaaaaaattaagaataagaatgcacaagaacaggg 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 391 ttgtgaagtacagcaaattctgctttaaaaaattaagaataaggatgcacaagaacaggg 332
Query: 244 caagacacagtctcacggctgcatggaaaacacatcaatcaaatgatgcaccgggttttc 303
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caagacacagtctcacagctgcatggaaaacacatcaatcaaatgatgcaccgggttttc 272
Query: 304 cactcaaggggagatgaaaagagaaaatttaattttggatgaaaacaaagcaatttatag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cactcaaggggagatgaaaagagaaaatttaattttggatgaaaacaaagcaatttatag 212
Query: 364 gtttgtgtgttttggtttgggttttagtttgttttggtttttgtttgtttgttttgtttt 423
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 211 gtttgtgtgttttggttt------tagtttgttttggtttttgtttgtttgttttgtttt 158
Query: 424 ggctaaggttattccaatgccaggctcacatagttatatcgttaagatataacatgataa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ggctaaggttattccaatgccaggctcacatagttatatcgttaagatataacatgataa 98
Query: 484 agcataaaaacaataaccttaacttacacctcaaaata 521
||||||||||||||||||||||||||||||||||||||
Sbjct: 97 agcataaaaacaataaccttaacttacacctcaaaata 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_f11.g1 MSMg01no548_f11.g1 CHROMAT_FILE:
MSMg01no548_f11.g1 PHD_FILE: MSMg01no548_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:14 2005
(624 letters)
>mm_chr3_149276805_149277828
Length = 1024
Score = 1160 bits (600), Expect = 0.0
Identities = 619/626 (98%), Gaps = 3/626 (0%)
Strand = Plus / Plus
Query: 1 tctgtgcccttctgtcttctctttattattattttgtctcaagtgactctgatcctcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgcccttctgtcttctctttattattattttgtctcaagtgactctgatcctcctg 260
Query: 61 tctttattttctctcctgtgtaaagcatcccggtagatctaagtgtgaggatgcacgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttattttctctcctgtgtaaagcatcccggtagatctaagtgtgaggatgcacgaca 320
Query: 121 gccggcctgtcagagtggagccaaacacaagcatggcagcactgttgtggcattttcaac 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gccggcctgtcagagtggagccaaacacaagcagggcagcactgttgtggcattttcaac 380
Query: 181 ctagcgttgggaatgagagcagctctgggtgagggatgagaattcacattagtggggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagcgttgggaatgagagcagctctgggtgagggatgagaattcacattagtggggatg 440
Query: 241 ctgccacagggctctcgtgggttctgtggagtgggatacatcactacatttctctttcat 300
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgccacaggactctcgtggggtctgtggagtgggatacatcactacatttctctttcat 500
Query: 301 tctcttaaatcctagaccagatttcagtttgtcctttgataatctcccttgtctcataga 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 tctcttaaatcctagaccagatttcagtttgtcctttgataatctcccttgcctcataga 560
Query: 361 gcaagttttatacccagtgagtctatactcagtgagcctaggtcaccctgtacagttctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaagttttatacccagtgagtctatactcagtgagcctaggtcaccctgtacagttctt 620
Query: 421 ctttcatcgtttggatacttactagatttttcactttaaaataaaatggttaataatttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcatcgtttggatacttactagatttttcactttaaaataaaatggttaataatttc 680
Query: 481 tctagtgtatttgagatttttttcaaaagcattttttttcaatctagtttaatctgt--t 538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 681 tctagtgtatttgagatttttttcaaaagcattttttt-caatctagtttaatctgtgtt 739
Query: 539 taatttaatatattaaatcttaatttaatattttataatttgagctaatatatttaaggt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taatttaatatattaaatcttaatttaatattttataatttgagctaatatatttaaggt 799
Query: 599 gtattacatcttaattttatatattc 624
||||||||||||||||||||||||||
Sbjct: 800 gtattacatcttaattttatatattc 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
