NAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTGGGAATTTTGTACAATGCATTTTTGATCATACTCATCTC
CTACCCTCCCCACCCAAACACCTCCTAACACACCTTCACCTCCCTAACCC
CCTCAACATTTTCTTCTCTCCTTTTTTTTCAGATAATGTATCAATTCCAC
TTTGTGCTGTCCATCCACACATACTCCTGGATGTAGAGCCATCTCCTAGA
GCATGGCCACACCATCAAAGCAAGCTGACTCTCTTCCCAGAAGCCATGAA
CTGTCCACAGCTCCCCAGAGAGGGAAAAGAACTCATGGGCCCCTTCTACC
ACCATGATAGGATGTTGACTGGCTTGATCTCCTACAGGTCTTGGGTAGGC
AGCTATGTCTGCTGTGGCTCTATGAGTGCAGTGATCTTGCCCTATCTGGA
AGACATTGTTTTGAATTGTACAAATAAAACTTGGAAGCAAGGCAACCCGA
GGGACAACTGCTCTATATTTCTTATTAATATATTTTAAAGACAGTCCAGT
TTATTATAGAGAACATTTTTTTACTGAAATAGCTTCAGCAATCATGTAAA
GACAGTAACATATGGTCTGCTGTTGGAATTGGTTGTTTGAGTGTCTCTTC
TTATTTGCCGAAGGATAGAGCCTAAGGTCTATCCCTGGAAATTGGAGGGC
TGCTCCTTTTATTCACTTTCATN

NAACTATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGATAGCCAAGGCTACATAAT
TGGATTCTGTCTCAAAAGAGACAGAGTTTTTGTATGTGTGGAAAATGTAG
GTCATATCAGAACAAATCAGTGTGTTCATGATTTTACTTTTATAAATTAT
AAACAAAATATTCAGGGTCCAATCATTACATACAGATACAAGTATTGATT
GTATATGGACATGAATACTTACAAAACTTAATGTATATTTTTGTGTAATG
CACTATAGAAAACATGCTCATTCATACAAATAAGCAGCTACATAATATGT
CATTGTCTGACTGTACTATAAGTATTCAATCTTTTTCTAATAATGATATT
AATGTTTTCAGTCTCTTCCTACATTGAACATTCTGCTTTCTGTATATTTT
ATACTATTAAATTTTTATAGAACATATTCATAAAGGTGGGTTGATAGATC
TGATTGCACATTTATGTTAAAATTTAATACAACTAAGGTTTGCTTTTCCA
AATTACTATAGTTAGTGTCACTTTTTTCAGCCATAGAACTACCTGTTTTC
ATATTGTTGACAGCACTAAATTCTGGCAGTTTTACTGCAGAAAACAAATG
CAGGAAAGCATAAAAATGATAAAAATGGGTAACAAACATTAACAATATGA
ATACATCCAAATCAGAAAGAAAGCA

Query= MSMg01no548_g20.g1 MSMg01no548_g20.g1 CHROMAT_FILE:
MSMg01no548_g20.g1 PHD_FILE: MSMg01no548_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:21 2005
         (638 letters)



>mm_chr3_82323530_82324570
          Length = 1041

 Score = 1122 bits (580), Expect = 0.0
 Identities = 632/664 (95%), Gaps = 27/664 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggatagccaaggctacataattggattctgtctcaaaagagacagagtttttgtatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 taggatagccaaggctacataattggattctgtctcaaaagagacagagtttttgtatgt 238

                                                                       
Query: 61  gtg---------------------g-aaaatgtaggtcatatcagaacaaatcagtgtgt 98
           |||                     | ||||||||||||||||||||||||||||||||||
Sbjct: 239 gtgtgtgtatatacacatgtttgtgtaaaatgtaggtcatatcagaacaaatcagtgtgt 298

                                                                       
Query: 99  tcatgattttacttttataaattataaacaaaatattcagggtccaatcattacatacag 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcatgattttacttttataaattataaacaaaatattcagggtccaatcattacatacag 358

                                                                       
Query: 159 atacaagtattgattgtatatggacatgaatacttacaaaacttaatgtatatttttgtg 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atacaagtattgattgtatatggacatgaatacttacaaaacttaatgtatatttttgtg 418

                                                                       
Query: 219 taatgcactatagaaaacatgctcattcatacaaataagcagctacataatatgtcattg 278
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 419 taatgcactatggaaaacatgctcattcatacaaataagcagctatataatatgtcattg 478

                                                                       
Query: 279 tctgactgtactataagtattcaatctttttctaataatgatattaatgttttcagtctc 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 479 tctgactgtactataagtattcaatctttttctaataatgatattaatgtttttagtctc 538

                                                                       
Query: 339 ttcctacattgaacattctgctttctgtatattttatactattaaattttt-atagaaca 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 539 ttcctacattgaacattctgctttctgtatattttatactattaaattttttatagaaca 598

                                                                       
Query: 398 tattcataaaggtgggttgatagatctgattgcacatttatgttaaaatttaatacaact 457
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tattcataaaggtgggttggtagatctgattgcacatttatgttaaaatttaatacaact 658

                                                                       
Query: 458 aaggtttgcttttccaaattactatagttagtgtcacttttttcagccatagaa---cta 514
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||
Sbjct: 659 aaggtttgcttttccaaattactatagttagtgtcacttttatcagccatagaagaacta 718

                                                                       
Query: 515 cctgttttcatattgttgacagcactaaattctggcagttttactgcagaaaacaaatgc 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cctgttttcatattgttgacagcactaaattctggcagttttactgcagaaaacaaatgc 778

                                                                       
Query: 575 aggaaagcataaaaatgataaaaatgggtaacaaacattaacaatatgaatacatccaaa 634
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aggaaagcataaaa-tgataaaaatgggtaacaaacattaacaatatgaatacatccaaa 837

               
Query: 635 tcag 638
           ||||
Sbjct: 838 tcag 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1041
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1031
Effective search space:   647468
Effective search space used:   647468
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)