BAC Information

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BAC

Clone NameMSMg01-548J11
Chromosome3 (Build37)
Map Location 96,054,504 - 96,054,981
singlet/doubletsinglet
Overlap genenone
Upstream geneBnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1
Downstream geneLOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548J11.T7 (MSMg01no548_j11.b1)MSMg01-548J11.TJ (MSMg01no548_j11.g1)
ACCAG612901AG612902
length732747
length of high quality
(start - end)		504 (46 - 549)475 (78 - 552)
definitionCHROMAT_FILE: MSMg01no548_j11.b1 PHD_FILE: MSMg01no548_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:33 2005CHROMAT_FILE: MSMg01no548_j11.g1 PHD_FILE: MSMg01no548_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAGAGCTTATAAAATTTACCTGAAAATATAAGAAGCCTAACATA
GCTTACAGAACTGAAACTTATTGTAGAGATAGCTGCCTGCCTATACAGTC
TGCTGTTTTTCAACACGTTGGAGCATCAAACTGTGGCCTAGGATCATCTG
ACCTTTGTAACGCAGAATTATGAAGGACTGACTATTCTGTCTTGGCAGAG
ATAATCAGTTGACTCTTTTTCTAGATAGTAATTTGTAGATGAATGGACAA
TTTCTGCCCATTGTCTACCTTGCCACAATGAACAACCCCACCAACCACGT
TGGCTCACAACCATATCAAATGGGATCCGAAGCCCTCTTGTGGTTGTCTA
AAGACAGACAGTGTAGTCACATACATTAAATAAATAAATCTTAAAAAAAA
AAATAAATAGTTGAGTTGAATTTTATTTACTTATTTATTATTGGCTGGTT
GTGTTTGATTCTACTCTACTTTTCTGTGCTATCCAGTCTCAGGAGCCTGG
CCATCCAGGTAGTATAGTATATGGGTTCCCTCTTGTGTGTCAGCCTCAAG
TAAATCAGACATTGGTTAGCCCACAAGGTCTATACCCCCATTGCCCCAAC
AGATCTTGCTGGCAGGAAAGATGTTGTTCAAAAGTTTTAGTGGCTGAATT
GGTGTCCCAAGTTTATCTTTCAGAATCCTGCG

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAATGCCAGGGCAACACAGA
CCCTGTCTCAAAAAAGAAGGGCAGGTGATACTGTGGGGGAATGGCAGAGG
ACTGGGATGGGGGGGGGGGGCGGGAGCTGATCGCATTGCAGTCAAGAGAC
AGCAGTTGGTGCTCAGCTTGCTTTTTTTTATTCAGTCTGGGACCCAGTGA
TGGTCCTGCCTACCTCCCCGCCTCACTTAAACTTGTCTAGAAACATGCTT
GCAAACACCTTAGAGTGTGTCTCCCAGATGATTCCAAATCCAGTCAACTT
GACAAGAAAGACCGTTAGACCTGAGAAAAACACATCTCCATGACTGTCTG
AATAAGCAAGTGTTACTCACAAGGGGCTGACCAGACCACTGCCTCACCCT
AAAACAGGGTTTCAGCGAAGAGCTCCTCATTGGCTTTTGGGGTCCCTTTT
ATGGGGAAGGACTGAGGTTTATAGAAAACAGCTGTTGAGATAATTGGCTG
TTAGCACCTGGACAGAAGGGTGGTGGACTAAGGGCTCACAGCTGCCTGTT
GGGTAGATAACTGGATAGAAAACATCTGTCCGGATAATTAACCAATTTGT
ATAGGAGGCCATAAAATTAGTTTGAAAACTACATCATGTGGGAAGGGGAA
GCCTGCTAGGGGATCCTGGGAAAAACCCTACTTCCTTAAGGCTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_j11.g1 MSMg01no548_j11.g1 CHROMAT_FILE:
MSMg01no548_j11.g1 PHD_FILE: MSMg01no548_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:33 2005
         (475 letters)



>mm_chr3_96054307_96055181
          Length = 875

 Score =  859 bits (444), Expect = 0.0
 Identities = 469/478 (98%), Gaps = 3/478 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaatgccagggcaacacagaccctgtctcaaaaaagaagggcaggtgatactgtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aaagaatgccagggcaacacagaccctgtctcaaaaaagaagggcaggtgatactgtggg 257

                                                                       
Query: 61  ggaatggcagaggactgggatgggggggggggg--cgggagctgatcgcattgcagtcaa 118
           | |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 258 gaaatggcagaggactgggatggggggggggggggcgggagctgatcgcattgcagtcaa 317

                                                                       
Query: 119 gagacagcagttggtgctcagcttgcttttttttattcagtctgggacccagtgatggtc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gagacagcagttggtgctcagcttgcttttttttattcagtctgggacccagtgatggtc 377

                                                                       
Query: 179 ctgcctacctccccgcctcacttaaacttgtctagaaacatgcttgcaaacaccttaga- 237
           ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| 
Sbjct: 378 ctgcctacctccccgcctcacttaagcttgtctagaaacatgctcgcaaacaccttagaa 437

                                                                       
Query: 238 gtgtgtctcccagatgattccaaatccagtcaacttgacaagaaagaccgttagacctga 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtgtgtctcccagatgattccaaatccagtcaacttgacaagaaagaccgttagacctga 497

                                                                       
Query: 298 gaaaaacacatctccatgactgtctgaataagcaagtgttactcacaaggggctgaccag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaaaaacacatctccatgactgtctgaataagcaagtgttactcacaaggggctgaccag 557

                                                                       
Query: 358 accactgcctcaccctaaaacagggtttcagcgaagagctcctcattggcttttggggtc 417
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 558 accactgcctcgccctaaaacagggtttcagcgaagagcccctcattggcttttggggtc 617

                                                                     
Query: 418 ccttttatggggaaggactgaggtttatagaaaacagctgttgagataattggctgtt 475
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 618 ccttttatggggaaggactggggtttatagaaaacagctgttgagataattggctgtt 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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