Query= MSMg01no548_k18.b1 MSMg01no548_k18.b1 CHROMAT_FILE:
MSMg01no548_k18.b1 PHD_FILE: MSMg01no548_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:39 2005
(612 letters)
>mm_chr3_127736980_127737991
Length = 1012
Score = 1152 bits (596), Expect = 0.0
Identities = 605/608 (99%)
Strand = Plus / Plus
Query: 5 gaattctctttctgtgttagaatcttcctttcgctgtagcatctcattcatccttctttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttctgtgttagaatcttcctttcgctgtagcatctcattcatccttctttc 264
Query: 65 agggaattgataccatcttgtctttctgaggcatttatgacagtttaaaatgttcatgga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggaattgataccatcttgtctttctgaggcatttatgacagtttaaaatgttcatgga 324
Query: 125 ttatttttaatgagctatagctgcacatagtaatccagtcaaacaataaatagtattccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatttttaatgagctatagctgcacatagtaatccagtcaaacaataaatagtattccc 384
Query: 185 tggtcaggaatctctccttcctcgacacctgtcctcttccttctcttattagtttcttcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggtcaggaatctctccttcctcgacacctgtcctcttccttctcttattagtttcttcc 444
Query: 245 ctaaggctagacagtgtaatttaaagagtttggctttatctccccagttatgacaacaag 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaaggctagacagtgtaatttaaagagtttggctttatctccccagttatgacaacaag 504
Query: 305 aatttttgtgtctgatttggtgattttttaaaaaattttattccaattcttgctaatggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatttttgtgtctgatttggtgattttttaaaaaattttattccaattcttgctaatggt 564
Query: 365 atcatttaattctcttaggctgagtagcacctttctgtgtgcatataaaccccatgaaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcatttaattctcttaggctgagtagcacctttctgtgtgcatataaaccccatgaaaa 624
Query: 425 cagtgatgttatttctttaattttatcaataactcctatcatgtatgattttaaacaaac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagtgatgttatttctttaattttatcaataactcctatcatgtatgattttaaacaaac 684
Query: 485 catttatttaaataaataataacttaatacaaagtgttcagcttagacgtgaagaggctg 544
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 685 catttatttaaataaataatagcttaatacaaagtgttcagcttagatgtgaagaggctg 744
Query: 545 gggtttctagccgtagaggtcaccacctccctgcccttcactctgctgacccatccacct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gggtttctagccgtagaggtcaccacctccctgcccttcactctgctgacccatccacct 804
Query: 605 ttgctcct 612
||||||||
Sbjct: 805 ttgctcct 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_k18.g1 MSMg01no548_k18.g1 CHROMAT_FILE:
MSMg01no548_k18.g1 PHD_FILE: MSMg01no548_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:39 2005
(657 letters)
>mm_chr3_127896440_127897490
Length = 1051
Score = 1162 bits (601), Expect = 0.0
Identities = 641/657 (97%), Gaps = 6/657 (0%)
Strand = Plus / Minus
Query: 1 ttttaatggacaatcaagccatttacctgagctaagtaaaatcataaagtcgtggccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ttttaatggacaatcaagccatttacctgagctaagtaaaatcataaagtcgtggccata 792
Query: 61 ccagtgaagatgctaaagttttgggcaagggtggagaatgagaggatcctgggtaacatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ccagtgaagatgctaaagttttgggcaagggtggagaatgagaggatcctgggtaacatc 732
Query: 121 aatccttgtggtgaggtcatatcaagggaagacagtcccagttgtcactgtttatctgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 731 aatccttgtggtgaggtcatatcaagggaagacagtcccagttgtcactgtttatcttac 672
Query: 181 tccttcacagtatcactgcttttctcaggatgggttttaattagctgactactaaagtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 671 tccttcacagtatcactgcttttctcaggatgggttttaattagctgactactaa----a 616
Query: 241 tctgcttttacccataggcatcagggatgtatcaaaaccttcaaaaaacaaagccaaggc 300
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 615 tctgcttttacccataggcatcggggatgtatcaaaaccttcaaaaaacaaagccaagcc 556
Query: 301 agaaagtttccggagatgtgaggaagcacacttccaatggtgatgaaagggagtggaaag 360
||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 555 agagagtttctggagatgtgaggaagcacccttccaatggtgatgaaagggagtggaaag 496
Query: 361 ggtgagaagaagatgatgtcagaagcaagcagcctggagtaccgtcacttttctgtggcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggtgagaagaagatgatgtcagaagcaagcagcctggagtaccgtcacttttctgtggcc 436
Query: 421 agtctattctcttcaaaactatcttatacattggctttggttactggagggcaaaaaaaa 480
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 435 agtctattctcttcaaacctatcttatacattggctttggttactggagggc--aaaaaa 378
Query: 481 aaaaaggatcaatcattctatttgttggggggttatttttctcgttacaatcattagcat 540
|||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 377 aaaaaggatcaaccattctatttgttggggggttatttttcttgtcacaatcattagcat 318
Query: 541 agctgaacaatcctttgagagaggattacaaacagctttactaaaagtaagagtgacatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agctgaacaatcctttgagagaggattacaaacagctttactaaaagtaagagtgacatt 258
Query: 601 tgcagacagaggcatgtgtatattcaaaggcaagtcatgttggcagagtgactgtct 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgcagacagaggcatgtgtatattcaaaggcaagtcatgttggcagagtgactgtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1051
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1041
Effective search space: 673527
Effective search space used: 673527
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
