BAC Information

Click to search

BAC

Clone NameB6Ng01-001B10
Chromosome4 (Build37)
Map Location 57,532,984 - 57,668,265
singlet/doubletdoublet
Overlap genePalm2, LOC100041513
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049
Downstream geneAkap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001B10.bB6Ng01-001B10.g
ACCDH839507DH839508
length1,150528
definitionDH839507|Mus musculus domesticus DNA, BAC clone: B6Ng01-001B10, 5' end.DH839508|Mus musculus domesticus DNA, BAC clone: B6Ng01-001B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,667,097 - 57,668,265)(57,532,984 - 57,533,517)
sequence
gaattcattattgaaattagaatgatactcaagtggaaaaaaaaaaaccc
acaaggcaagcaataagccctggttccaagaacagatatgaaacagatcg
aactactgtgggtttggttgcctgaaatatcaagagcaccagtttgatgg
tttgtatttgcttggcccagagagtggcaatatatggaagtatctccctg
ttggagtaggtgtggccttgtcggagtaggtatgtcactgtgggtgtgga
ccttaagacccttatcctagctgcctggaagtcagtcttccattagcagc
cttcagatgaagatgtagaactctcagctctgcctgcattctgcctgcct
agacattgccatgctcctgccttgatgatggactgaacctctgaacctgt
aagccagccccaattaaatggtgtcctttataagacttgtattggtcatg
gtgtctgttcacagcagtaaaaccctaagacaactactatggggttctgt
gtaaccccaggaacacagtaactcactgataatagttgaccctggaattt
ttcagtataatattccatcaggaaacaactcatacagatgttaacgtctg
agatttgtttttaaaatataagaaatgagtctgctttcagcaaccctcat
atattttttaaagcctcattggtctcctcttaccagcaagtcaagaatat
gactgttacacaagccaagaagaatagcaaacagagacaagttttctgct
aagtgacaaggctctccgctgtttgcagtcactctgatggcatgacttga
ggccatattgctcacagttcagctatcgatctttgtgttatttcagataa
tagaaatttctgggctttgaggaggtagccagcatccttgacctgtattg
ttattagcccagagagccaaggttatttctaatgagttcaaagggagggg
gctctgccataaggctttgggaaacaaacaaacaaacaaaagacaaacaa
aacaaacacaaaagctcagctttgtggtgagtggctctctcttacaagtc
ccagagtgatttctaatgtctgagtcaaagcagatcagtctgaaatcagg
caatgctgtgctctttagttactgcgtgctattgaatttcaagcttcggt

cccagggagatcgctacactgacagtacagtgaaggatgtgtgctcgtag
gtgaagtgggaggcaggcagtcctcatatcatgaagacaggcctgagtag
aatttccatcctacggcagtggttctcagccttcctaatactgcaaccct
ttaatacagttcctcatgttggtggtaaccaccaaccataaaacgatttc
actgctatttcaaaaccgtaactgtgttactgttatgaaccacaatgtat
ctaatatacaggattctgatatgtgacacctccaaaggaatcacgaccca
caggttgagacaggagcgctaatggaatgtaagctatacgtgttttgaaa
aggatgcacccattggtgtatatgagaaaggggaggggatctagaaggtt
gggagggagggctagaaagccatagataggaaataaagtgatttctatgc
ttctctgaagtagacccatgtcatctcttcccttcccactggtttgcata
aagaggaccaccgaagatataaaatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_57667097_57668265
seq2: B6Ng01-001B10.b_46_1195 (reverse)

seq1  ACCGAAGCCTGGAAAATCAATAGCACGCAGTAGACTAAAGAGCACAGCAA  50
      ||||||| || |||| |||||||||||||||| ||||||||||||||| |
seq2  ACCGAAG-CTTGAAATTCAATAGCACGCAGTA-ACTAAAGAGCACAGC-A  47

seq1  TTGCCCTTGATTTCAGACTGATTCTGGCTTTGACTCAAGGACATTAGAAA  100
      |||||  |||||||||||||| ||| |||||||||||  |||||||||||
seq2  TTGCC--TGATTTCAGACTGA-TCT-GCTTTGACTCA--GACATTAGAAA  91

seq1  CCACCTCTGGGGACTTTGTAAGAGAGAGCCACTCACCACAAAGCTGAGGC  150
       || |||| ||||| |||||||||||||||||||||||||||||||| ||
seq2  TCA-CTCT-GGGAC-TTGTAAGAGAGAGCCACTCACCACAAAGCTGA-GC  137

seq1  TTTTGTGTTTTGTTTTGTTTGGTCTTTTTGTTTGTTTGTTTGTTTTCCCA  200
      ||||||| |||||||||||| ||| ||||||||||||||||| |||||||
seq2  TTTTGTG-TTTGTTTTGTTT-GTC-TTTTGTTTGTTTGTTTG-TTTCCCA  183

seq1  AAGGCCTTATGGCAGAGCCCCCTCCCTTTGAACTTCATTAGAAATAACCT  250
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AA-GCCTTATGGCAGAGCCCCCTCCCTTTGAAC-TCATTAGAAATAACCT  231

seq1  TGGCTCTCTGGGCTAATAACAATACAGGTCAAGGATGCTGGCTACCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCTGGGCTAATAACAATACAGGTCAAGGATGCTGGCTACCTCCT  281

seq1  CAAAGCCCAGAAATTTCTATTATCTGAAATAACACAAAGATCGATAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCAGAAATTTCTATTATCTGAAATAACACAAAGATCGATAGCTG  331

seq1  AACTGTGAGCAATATGGCCTCAAGTCATGCCATCAGAGTGACTGCAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAGCAATATGGCCTCAAGTCATGCCATCAGAGTGACTGCAAACA  381

seq1  GCGGAGAGCCTTGTCACTTAGCAGAAAACTTGTCTCTGTTTGCTATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGAGCCTTGTCACTTAGCAGAAAACTTGTCTCTGTTTGCTATTCTT  431

seq1  CTTGGCTTGTGTAACAGTCATATTCTTGACTTGCTGGTAAGAGGAGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTGTGTAACAGTCATATTCTTGACTTGCTGGTAAGAGGAGACCA  481

seq1  ATGAGGCTTTAAAAAATATATGAGGGTTGCTGAAAGCAGACTCATTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTTTAAAAAATATATGAGGGTTGCTGAAAGCAGACTCATTTCTT  531

seq1  ATATTTTAAAAACAAATCTCAGACGTTAACATCTGTATGAGTTGTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAAAACAAATCTCAGACGTTAACATCTGTATGAGTTGTTTCCT  581

seq1  GATGGAATATTATACTGAAAAATTCCAGGGTCAACTATTATCAGTGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAATATTATACTGAAAAATTCCAGGGTCAACTATTATCAGTGAGTT  631

seq1  ACTGTGTTCCTGGGGTTACACAGAACCCCATAGTAGTTGTCTTAGGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTCCTGGGGTTACACAGAACCCCATAGTAGTTGTCTTAGGGTTT  681

seq1  TACTGCTGTGAACAGACACCATGACCAATACAAGTCTTATAAAGGACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGTGAACAGACACCATGACCAATACAAGTCTTATAAAGGACACC  731

seq1  ATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATCATCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATCATCAAGG  781

seq1  CAGGAGCATGGCAATGTCTAGGCAGGCAGAATGCAGGCAGAGCTGAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCATGGCAATGTCTAGGCAGGCAGAATGCAGGCAGAGCTGAGAGT  831

seq1  TCTACATCTTCATCTGAAGGCTGCTAATGGAAGACTGACTTCCAGGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCTTCATCTGAAGGCTGCTAATGGAAGACTGACTTCCAGGCAGC  881

seq1  TAGGATAAGGGTCTTAAGGTCCACACCCACAGTGACATACCTACTCCGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAAGGGTCTTAAGGTCCACACCCACAGTGACATACCTACTCCGAC  931

seq1  AAGGCCACACCTACTCCAACAGGGAGATACTTCCATATATTGCCACTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACACCTACTCCAACAGGGAGATACTTCCATATATTGCCACTCTC  981

seq1  TGGGCCAAGCAAATACAAACCATCAAACTGGTGCTCTTGATATTTCAGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAAGCAAATACAAACCATCAAACTGGTGCTCTTGATATTTCAGGC  1031

seq1  AACCAAACCCACAGTAGTTCGATCTGTTTCATATCTGTTCTTGGAACCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCCACAGTAGTTCGATCTGTTTCATATCTGTTCTTGGAACCAG  1081

seq1  GGCTTATTGCTTGCCTTGTGGGTTTTTTTTTTTCCACTTGAGTATCATTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATTGCTTGCCTTGTGGGTTTTTTTTTTTCCACTTGAGTATCATTC  1131

seq1  TAATTTCAATAATGAATTC  1169
      |||||||||||||||||||
seq2  TAATTTCAATAATGAATTC  1150

seq1: chr4_57532984_57533517
seq2: B6Ng01-001B10.g_67_600

seq1  GAATTCCCCAGGGAGATCGCTACACTGACAGTACAGTGAAGGATGTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGGGAGATCGCTACACTGACAGTACAGTGAAGGATGTGTGC  50

seq1  TCGTAGGTGAAGTGGGAGGCAGGCAGTCCTCATATCATGAAGACAGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGGTGAAGTGGGAGGCAGGCAGTCCTCATATCATGAAGACAGGCCT  100

seq1  GAGTAGAATTTCCATCCTACGGCAGTGGTTCTCAGCCTTCCTAATACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAATTTCCATCCTACGGCAGTGGTTCTCAGCCTTCCTAATACTGC  150

seq1  AACCCTTTAATACAGTTCCTCATGTTGGTGGTAACCACCAACCATAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTAATACAGTTCCTCATGTTGGTGGTAACCACCAACCATAAAAC  200

seq1  GATTTCACTGCTATTTCAAAACCGTAACTGTGTTACTGTTATGAACCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACTGCTATTTCAAAACCGTAACTGTGTTACTGTTATGAACCACA  250

seq1  ATGTATCTAATATACAGGATTCTGATATGTGACACCTCCAAAGGAATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTAATATACAGGATTCTGATATGTGACACCTCCAAAGGAATCAC  300

seq1  GACCCACAGGTTGAGACAGGAGCGCTAATGGAATGTAAGCTATACGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACAGGTTGAGACAGGAGCGCTAATGGAATGTAAGCTATACGTGTT  350

seq1  TTGAAAAGGATGCACCCATTGGTGTATATGAGAAAGGGGAGGGGATCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGGATGCACCCATTGGTGTATATGAGAAAGGGGAGGGGATCTAG  400

seq1  AAGGTTGGGAGGGAGGGCTAGAAAGCCAGAGATAGGAAATAAAGTGATTT  450
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGGTTGGGAGGGAGGGCTAGAAAGCCATAGATAGGAAATAAAGTGATTT  450

seq1  CTATGCTTCTCTGAAGTAGACCCATGTCATCTCTTCCCTTCCCACTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTTCTCTGAAGTAGACCCATGTCATCTCTTCCCTTCCCACTGGTT  500

seq1  TGCATAAAGAGGACCACCGAAGATATAAAACATG  534
      |||||||||||||||||||||||||||||| |||
seq2  TGCATAAAGAGGACCACCGAAGATATAAAATATG  534