BAC Information

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BAC

Clone NameB6Ng01-001I10
Chromosome4 (Build37)
Map Location 144,085,432 - 144,086,301
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3
Downstream gene9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001I10.bB6Ng01-001I10.g
ACCDH839821DH839822
length8701,227
definitionDH839821|Mus musculus domesticus DNA, BAC clone: B6Ng01-001I10, 5' end.DH839822|Mus musculus domesticus DNA, BAC clone: B6Ng01-001I10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtacaggcatgaaaaaaaaatgagagagagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagtgtctgt
gactacatagactttgtagacattgttttcatggcttgggacatgtgaag
tatatttttacttattaatctactgctagagacaaggcagttgtggtgtt
gtagttatgaatagggtaatctaacactaaagacaatgcagctgagaatg
atgcagttataaacaactttctccttaacgggatagttataatgactgat
gtaggcatgctgaatggttcacatatgagaaaggagtgctgttaagataa
aaaagaaaatagggacctagttattgctttgtctatttctacggcttttg
gtaaatatatatgccttatttccaccatcacagtattatatagaatagtg
ttactgccctaaaaattgcctatgttctgtagtgagaatattagtttttt
ttaaaaacagctattttatgtgaatatgttttttgttttaatcctagggg
agggatatgggctgcttcagattgtctacagcaactaactatgatttgcc
ttgtgttctggcaggggagtgattctgccacctgaagattgtttactttt
ggaattctggggactcttaaggaggtataaaaacaccctgagagaggtgg
tggctgcttctctcactgctggtctccctgttgctcctggcgctgttgcc
cttgctgctgctggttcctgctgttgcatttgttattttgctgcttttgc
tggttgctgttgctgattggagatatcctgatgatgaagactggatttgc
ctctaggaactcagcacctt
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaaaagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctctcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatatcgcagcctcagaagctctgtggctcttgccgggaaggtggc
tggttgtctggagctgaggatggtgccgccccagaatctctgcgactctc
tcgcccgtcccagaaacagctggcactctgtattccacacggtcacccgt
gcagcctgccctccgcggagtcccggagccaagaaggctcccgccggcgc
ctgtgccacaaacctctcaggccaggcagaccccgtgctctcaccaggaa
ggtggccggctgtctggagctaaagatggcgccgcccagaagctctgcga
ctctctcgcccgtcccagaaacagctggcactctgtattccacacggtca
cccgtgcagcctgccctccgcggagtcccggagccaaaaggctcctgccg
gcgcctgtgccacaacctctcgggccaggcagaccccgttgctctcacca
ggaaagtggccggctgtctggagctaaagatggcgccgtccagaagctct
tgcgactcttctcgcccgtcccagaaacagctggcacttctgtattccac
acgtcaccttgtgcagctgccttcgcgagtccctggagctagaagcttcc
tgcggcctctgtgtcacaacctctcagtcaggcagacccctcgtgcttct
caccatagtgcagcctgtctggaagctgaaattggccgctctaaaatttc
tgcatcttcttgccgttcagatacctgcacttttatcaacggtacccgtg
tgaaccgtcccctcgctgagatcgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144085432_144086301
seq2: B6Ng01-001I10.b_46_915

seq1  GAATTCAGTACAGGCATGAAAAAAAAATGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACAGGCATGAAAAAAAAATGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTCTGT  100

seq1  GACTACATAGACTTTGTAGACATTGTTTTCATGGCTTGGGACATGTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACATAGACTTTGTAGACATTGTTTTCATGGCTTGGGACATGTGAAG  150

seq1  TATATTTTTACTTATTAATCTACTGCTAGAGACAAGGCAGTTGTGGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTACTTATTAATCTACTGCTAGAGACAAGGCAGTTGTGGTGTT  200

seq1  GTAGTTATGAATAGGGTAATCTAACACTAAAGACAATGCAGCTGAGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATGAATAGGGTAATCTAACACTAAAGACAATGCAGCTGAGAATG  250

seq1  ATGCAGTTATAAACAACTTTCTCCTTAACGGGATAGTTATAATGACTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTATAAACAACTTTCTCCTTAACGGGATAGTTATAATGACTGAT  300

seq1  GTAGGCATGCTGAATGGTTCACATATGAGAAAGGAGTGCTGTTAAGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCATGCTGAATGGTTCACATATGAGAAAGGAGTGCTGTTAAGATAA  350

seq1  AAAAGAAAATAGGGACCTAGTTATTGCTTTGTCTATTTCTACGGCTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATAGGGACCTAGTTATTGCTTTGTCTATTTCTACGGCTTTTG  400

seq1  GTAAATATATATGCCTTATTTCCACCATCACAGTATTATATAGAATAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATATATGCCTTATTTCCACCATCACAGTATTATATAGAATAGTG  450

seq1  TTACTGCCCTAAAAATTGCCTATGTTCTGTAGTGAGAATATTAGTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCCCTAAAAATTGCCTATGTTCTGTAGTGAGAATATTAGTTTTTT  500

seq1  TTAAAAACAGCTATTTTATGTGAATATGTTTTTTGTTTTAATCCTAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACAGCTATTTTATGTGAATATGTTTTTTGTTTTAATCCTAGGGG  550

seq1  AGGGATATGGGCTGCTTCAGATTGTCTACAGCAACTAACTATGATTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATATGGGCTGCTTCAGATTGTCTACAGCAACTAACTATGATTTGCC  600

seq1  TTGTGTTCTGGCAGGGGAGTGATTCTGCCACCTGAAGATTGTTTACTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCTGGCAGGGGAGTGATTCTGCCACCTGAAGATTGTTTACTTTT  650

seq1  GGAATTCTGGGGACTCTTAAGGAGGTATAAAAACACCCTGAGAGAGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTGGGGACTCTTAAGGAGGTATAAAAACACCCTGAGAGAGGTGG  700

seq1  TGGCTGCTTCTCTCACTGCTGGTCTCCCTGTTGCTCCTGGCGCTGTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTTCTCTCACTGCTGGTCTCCCTGTTGCTCCTGGCGCTGTTGCC  750

seq1  CTTGCTGCTGCTGGTTCCTGCTGTTGCATTTGTTATTTTGCTGCTTTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCTGCTGGTTCCTGCTGTTGCATTTGTTATTTTGCTGCTTTTGC  800

seq1  TGGTTGCTGTTGCTGATTGGAGATATCCTGATGATGAAGACTGGATTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGTTGCTGATTGGAGATATCCTGATGATGAAGACTGGATTTGC  850

seq1  CTCTAGGAACTCAGCACCTT  870
      ||||||||||||||||||||
seq2  CTCTAGGAACTCAGCACCTT  870