BAC Information

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BAC

Clone NameB6Ng01-001J06
Chromosome4 (Build37)
Map Location 128,148,036 - 128,326,191
singlet/doubletdoublet
Overlap geneZscan20, Tlr12
Upstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik
Downstream genePhc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001J06.bB6Ng01-001J06.g
ACCDH839859DH839860
length1,1101,101
definitionDH839859|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J06, 5' end.DH839860|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,325,081 - 128,326,191)(128,148,036 - 128,149,148)
sequence
gaattcaattgtcagagctctgttgatctgaatatcccctttgccatttc
attgtaacaaaggatggtgttttgatcttaacacttgtggctggtgtgaa
tatggtcctgcctagagctgtcatgagatgagagatcagcctggagcagc
taggctgaaaactagtccaggcagaggtcagagatggggtcaacccagca
ggagttgtcagatgagagcaggggtgagaggcaggtcagatgtgagatca
aagctcaggaactggggcaggtatggtcactcccgactctcctgaggaag
aaggcttgttagctggagccccttgggaagacagatcatcagggtctctg
agttaagccttctacttacaggaccctggaggttcttagtaattgatctg
gattggagtctgaaggggatgcaggcagccaatgctattcattaggcttc
aggttcctatagttacatcagctgtactatagcattcttggcccttagat
agtggcatcatatagggaggtgggacatagagagaggaagtaggtcgcta
ggggatagacatgcctgggcactggtctcttctctgtctgctccctctct
gccacaaagatgttcggtatcacaataggccccaaatcagcagagccaag
aactatagattaaaatcatgagctaaaataaaccattcttgtttgtgtcc
gatgcttttatcacagcaatacaaagtttggctaatacaacaacccaggg
tctgtcgctgctgctgctgctgctgctgctgctgctgctgctcgttttgc
tttgagtttgctatgatctttctttttacaaagctctagaagagatttgg
aaatacagttgtacgtttactaatccatttgatatttaatcatttggttc
atatgtcgcttgttttaaaacagtactacacaccccgcgcccagacttct
ggtaaggcacctatagtcctcctcagtctacacttctagcaggaagtcag
tactggaagtgtggctctcttctctgcattcactctctgtgcccttttgg
actcaagttcctgggctttacctctggtccacttggtaccctacgagctt
cattacaaac
gaattcccccccctgcccccgtatctgcttgttgtattttcccatcttca
tttctctcatggcttcgatctctttgtgtccttttcctatagattctggg
aaaataccctaacttcacagccacatcatttctggacatctgcacaatcc
acaagccacacgtcagggtgccccaagtcacatgttagagcaggcgtctg
tctcctcccttcctgtgtagccttcgctgacttcagtgcctccctctgcc
atatcttccttgggcatcagaggtgccatgctccacttaaccttgggcag
tcatggctggaaacctttccctctgttctccactgtaattcacatgaaag
atttgtgttgacttctcgcaatggcctcttctttaggagttttcttgtgg
ctagtgattccgtgctttcccaggaaggaaatgtgtgtgcagtcaggact
tacgtcatctgggttctgccagccatccccggggcccttcttcacagatg
ctaggagggcaggagaaagggggttctccctgctcatctccctagagagg
cagagctgggaaggacaacaatgaggaacggggagacttagtcttctgct
tcagcacccagaagttatatggagcaatgactcttagctagggaaatgac
tcgaggccacatggaaatctaagcgtgctgagcaaaaggttctgcctgat
ccctgcggcgggtgggcggcaaggggctttcaagaggcatcggggagtct
tctcaatgattccctgctgatctgaactccagccctctccccagtggcca
tagactgaacctctataactctaatttcctttggaagatggagtcagggg
tccctgaggtcatggagaggcagaatgcagaggctcctgtcactgccatc
gctacattgtgcctgagcttcaacaggaagaagagagatgagccgggctg
tattatggctctggttccagctgggaccgtcctgctctgcatctgtaccc
accagccgactaagcctgttgttgctgctgctccaggcctggacccctca
ggccctgtatccatcctctgacatggtggttggagataatactaccctgg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_128325081_128326191
seq2: B6Ng01-001J06.b_46_1155 (reverse)

seq1  GTTTGGTAATGAAGGTCGTTGTGT-CCAAGTGGAACCAGAGGTAAAGCCC  49
      |||| ||||||||| |||| | || |||||||| ||||||||||||||||
seq2  GTTT-GTAATGAAGCTCGTAGGGTACCAAGTGG-ACCAGAGGTAAAGCCC  48

seq1  AGGAACTCTGAGTCCAAAAGGGCACAGAGAGCTGAAGGCAGAGAAGAGAG  99
      ||||||| ||||||||||||||||||||||| |||| |||||||||||||
seq2  AGGAACT-TGAGTCCAAAAGGGCACAGAGAG-TGAATGCAGAGAAGAGAG  96

seq1  CCACACTTCCAGTACTGACTCCCTGCTAG-AGTGTAGACTGAGGAGGACT  148
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  CCACACTTCCAGTACTGACTTCCTGCTAGAAGTGTAGACTGAGGAGGACT  146

seq1  ATAGGTGCC-TAACAGAAGTCTGGGGCGCGGGGTGTGTAGTACTGTTATA  197
      ||||||||| || ||||||||| |||||||||||||||||||||||| ||
seq2  ATAGGTGCCTTACCAGAAGTCT-GGGCGCGGGGTGTGTAGTACTGTTTTA  195

seq1  AAACAAGCGACATATGAA-CAAATGATTAAATATCAAATGGATTAGTAAA  246
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAACAAGCGACATATGAACCAAATGATTAAATATCAAATGGATTAGTAAA  245

seq1  CGTACAACTGTATTTCCAAATCTCTTCTAGAGCTTTGTAAAAAGAAAGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAACTGTATTTCCAAATCTCTTCTAGAGCTTTGTAAAAAGAAAGAT  295

seq1  CATAGCAAACTCAAAGCAAAACGAGCAGCAGCAGCAGCAGCAGCAGCAGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAAACTCAAAGCAAAACGAGCAGCAGCAGCAGCAGCAGCAGCAGC  345

seq1  AGCAGCAGCGACAGACCCTGGGTTGTTGTATTAGCCAAACTTTGTATTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCGACAGACCCTGGGTTGTTGTATTAGCCAAACTTTGTATTGC  395

seq1  TGTGATAAAAGCATCGGACACAAACAAGAATGGTTTATTTTAGCTCATGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAAAAGCATCGGACACAAACAAGAATGGTTTATTTTAGCTCATGA  445

seq1  TTTTAATCTATAGTTCTTGGCTCTGCTGATTTGGGGCCTATTGTGATACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTATAGTTCTTGGCTCTGCTGATTTGGGGCCTATTGTGATACC  495

seq1  GAACATCTTTGTGGCAGAGAGGGAGCAGACAGAGAAGAGACCAGTGCCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTTTGTGGCAGAGAGGGAGCAGACAGAGAAGAGACCAGTGCCCA  545

seq1  GGCATGTCTATCCCCTAGCGACCTACTTCCTCTCTCTATGTCCCACCTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTCTATCCCCTAGCGACCTACTTCCTCTCTCTATGTCCCACCTCC  595

seq1  CTATATGATGCCACTATCTAAGGGCCAAGAATGCTATAGTACAGCTGATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGATGCCACTATCTAAGGGCCAAGAATGCTATAGTACAGCTGATG  645

seq1  TAACTATAGGAACCTGAAGCCTAATGAATAGCATTGGCTGCCTGCATCCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATAGGAACCTGAAGCCTAATGAATAGCATTGGCTGCCTGCATCCC  695

seq1  CTTCAGACTCCAATCCAGATCAATTACTAAGAACCTCCAGGGTCCTGTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACTCCAATCCAGATCAATTACTAAGAACCTCCAGGGTCCTGTAA  745

seq1  GTAGAAGGCTTAACTCAGAGACCCTGATGATCTGTCTTCCCAAGGGGCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGCTTAACTCAGAGACCCTGATGATCTGTCTTCCCAAGGGGCTC  795

seq1  CAGCTAACAAGCCTTCTTCCTCAGGAGAGTCGGGAGTGACCATACCTGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAACAAGCCTTCTTCCTCAGGAGAGTCGGGAGTGACCATACCTGCC  845

seq1  CCAGTTCCTGAGCTTTGATCTCACATCTGACCTGCCTCTCACCCCTGCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCTGAGCTTTGATCTCACATCTGACCTGCCTCTCACCCCTGCTC  895

seq1  TCATCTGACAACTCCTGCTGGGTTGACCCCATCTCTGACCTCTGCCTGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGACAACTCCTGCTGGGTTGACCCCATCTCTGACCTCTGCCTGGA  945

seq1  CTAGTTTTCAGCCTAGCTGCTCCAGGCTGATCTCTCATCTCATGACAGCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTCAGCCTAGCTGCTCCAGGCTGATCTCTCATCTCATGACAGCT  995

seq1  CTAGGCAGGACCATATTCACACCAGCCACAAGTGTTAAGATCAAAACACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGGACCATATTCACACCAGCCACAAGTGTTAAGATCAAAACACC  1045

seq1  ATCCTTTGTTACAATGAAATGGCAAAGGGGATATTCAGATCAACAGAGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTGTTACAATGAAATGGCAAAGGGGATATTCAGATCAACAGAGCT  1095

seq1  CTGACAATTGAATTC  1111
      |||||||||||||||
seq2  CTGACAATTGAATTC  1110

seq1: chr4_128148036_128149148
seq2: B6Ng01-001J06.g_68_1168

seq1  GAATTCCCCCCCCTGCCCCCGTATCTGCTTGTTGTATTTTCCCATCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCCCCTGCCCCCGTATCTGCTTGTTGTATTTTCCCATCTTCA  50

seq1  TTTCTCTCATGGCTTCGATCTCTTTGTGTCCTTTTCCTATAGATTCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCATGGCTTCGATCTCTTTGTGTCCTTTTCCTATAGATTCTGGG  100

seq1  AAAATACCCTAACTTCACAGCCACATCATTTCTGGACATCTGCACAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCCTAACTTCACAGCCACATCATTTCTGGACATCTGCACAATCC  150

seq1  ACAAGCCACACGTCAGGGTGCCCCAAGTCACATGTTAGAGCAGGCGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCACACGTCAGGGTGCCCCAAGTCACATGTTAGAGCAGGCGTCTG  200

seq1  TCTCCTCCCTTCCTGTGTAGCCTTCGCTGACTTCAGTGCCTCCCTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCCTTCCTGTGTAGCCTTCGCTGACTTCAGTGCCTCCCTCTGCC  250

seq1  ATATCTTCCTTGGGCATCAGAGGTGCCATGCTCCACTTAACCTTGGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCCTTGGGCATCAGAGGTGCCATGCTCCACTTAACCTTGGGCAG  300

seq1  TCATGGCTGGAAACCTTTCCCTCTGTTCTCCACTGTAATTCACATGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTGGAAACCTTTCCCTCTGTTCTCCACTGTAATTCACATGAAAG  350

seq1  ATTTGTGTTGACTTCTCGCAATGGCCTCTTCTTTAGGAGTTTTCTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTGACTTCTCGCAATGGCCTCTTCTTTAGGAGTTTTCTTGTGG  400

seq1  CTAGTGATTCCGTGCTTTCCCAGGAAGGAAATGTGTGTGCAGTCAGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGATTCCGTGCTTTCCCAGGAAGGAAATGTGTGTGCAGTCAGGACT  450

seq1  TACGTCATCTGGGTTCTGCCAGCCATCCCCGGGGCCCTTCTTCACAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTCATCTGGGTTCTGCCAGCCATCCCCGGGGCCCTTCTTCACAGATG  500

seq1  CTAGGAGGGCAGGAGAAAGGGGGTTCTCCCTGCTCATCTCCCTAGAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGGGCAGGAGAAAGGGGGTTCTCCCTGCTCATCTCCCTAGAGAGG  550

seq1  CAGAGCTGGGAAGGACAACAATGAGGAACGGGGAGACTTAGTCTTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGGAAGGACAACAATGAGGAACGGGGAGACTTAGTCTTCTGCT  600

seq1  TCAGCACCCAGAAGTTATATGGAGCAATGACTCTTAGCTAGGGAAATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCCAGAAGTTATATGGAGCAATGACTCTTAGCTAGGGAAATGAC  650

seq1  TCGAGGCCACATGGAAATCTAAGCGTGCTGAGCAAAAGGTTCTGCCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCACATGGAAATCTAAGCGTGCTGAGCAAAAGGTTCTGCCTGAT  700

seq1  CCCTGCGGCGGGTGGGCGGCAAGGGGCTTTCAAGAGGCATCGGGGAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCGGCGGGTGGGCGGCAAGGGGCTTTCAAGAGGCATCGGGGAGTCT  750

seq1  TCTCAATGATTCCCTGCTGATCTGAACTCCAGCCCTCTCCCCAGTGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGATTCCCTGCTGATCTGAACTCCAGCCCTCTCCCCAGTGGCCA  800

seq1  TAGACTGAACCTCTATAACTCTAATTTCCTTTTGGAAGATGGAGTCAGGG  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAGACTGAACCTCTATAACTCTAATTTCC-TTTGGAAGATGGAGTCAGGG  849

seq1  GTCCCTGAGGTCATGGAGAGGCAGAATGCAGAGGCTCCTGTCACTGCCCA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTCCCTGAGGTCATGGAGAGGCAGAATGCAGAGGCTCCTGTCACTG-CCA  898

seq1  TCGCTACATTGTGCCTGAGCTTCCACAGGAAG-AGAGAGATGAGCCGGGC  949
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  TCGCTACATTGTGCCTGAGCTTCAACAGGAAGAAGAGAGATGAGCCGGGC  948

seq1  TGTATTTATGGCTCTGGTTCCAGCTGGTACTGTCCTGCTCCTGCATCTGT  999
      |||| |||||||||||||||||||||| || |||||||| ||||||||||
seq2  TGTA-TTATGGCTCTGGTTCCAGCTGGGACCGTCCTGCT-CTGCATCTGT  996

seq1  ACCACACCAGCCGACCTAAGCCTG-TGTTGTCTGCTGCTCCCAGGGCCCT  1048
      ||| |||||||||| ||||||||| ||||| |||||||| |||||  |||
seq2  ACC-CACCAGCCGA-CTAAGCCTGTTGTTG-CTGCTGCT-CCAGG--CCT  1040

seq1  GTACCCCTACAGGCCCTGTATCCCCATCCTCTGCACCATGTGGTTGGAAG  1098
      | |||||| ||||||||||||  |||||||||| ||   |||||||| ||
seq2  GGACCCCT-CAGGCCCTGTAT--CCATCCTCTG-ACATGGTGGTTGG-AG  1085

seq1  ATAACA-TACCCTGGG  1113
      |||| | |||||||||
seq2  ATAATACTACCCTGGG  1101