BAC Information

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BAC

Clone NameB6Ng01-001L12
Chromosome4 (Build37)
Map Location 145,606,740 - 145,607,413
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001L12.bB6Ng01-001L12.g
ACCDH839958DH839959
length8031,271
definitionDH839958|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L12, 5' end.DH839959|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtagttgctcagtccatgagactggatctctcagctggtcctc
agtatataccataatcctgaagacgtgggctctaatgccaatgaaagagt
ggatttgctaggaagggagggaagaaacagggatacatacgtacatacat
acatacatacatacatacatacatacatacacacatacagagagagagaa
agagagagagagagagagagagagagagagagagagagagagagagagag
agagagagagcgcttccttcttctatgtcctttatacaggctgtcaacag
aaggtgtggtctaaattaaaggtgggtctttccactgcaaagatttgacc
ttctcacttcaaatgatccaattaagcaaaacaaaacaatacaatacaat
acaatacaatacaatacaatacaatacaaaacaaaacaaaaatcccactc
aattgtatccagacatttctgagatgcagttaattccagatgtggacagg
ttgataaccaagaataaccatcacagaaggtttgtttaaggataaaccac
attctggtattctagccagttttatgtgtaataattactaacttgcaagt
attgggaaaactgggagaaacatttacttctccgaactgtccatacttgc
taagcaaagcagtgttatttattttcataatatacttagtatcaaattgg
ctataagtaagtgttcatgtaaactaaagttgtaacttgacccagatttg
gctcatataaactgaatttaaaggacaaataatgtaatgacaaaagtcta
ttt
gaattccttatatattttggatattggtcttctgatggaggattagtgaa
gtgttttcttcaatctgtaggtttctgatttattgtagtcactgtacctt
ttgccttacagaaactgttcagtttcatgaggttcctatttgtcaattga
tctttgagtctgaggaattggtgttcagttcatgaaatatcccctgtgcc
aatgagttttaatctcttttctactttcttttttattagattcagtgtat
ttgattttatgtagaggtctttaatccacttgaatgtgagccttgtgcaa
ggttataaatacggatctattttcactctactacagacagaccacaagtt
agagcagcaccatttattgaagatattttcttttttgactgcatgttttt
ggcttctttgtcaatgatctagtatccatatgtttataagtttacttctg
ggatttcgattcatatcccgttgtttgacctgtctttctctgtatcaata
ccccgtggttttcatcactattgctttgtagtacagcttgagatcaggtg
tggtgatttccccaaaagttcttttattattgtgaattatatttgatatc
ctgggttttttgtttttccatatgaagctgagatttactcttttcttctt
atctgtgaagaactgtgttgaaattttgatgaattgaatttatagattgt
tttcagtaagattgccattttcattgtgttaatcttgcctatctaagagc
atgagagatctttccatcttcagaggtcttctatttctttttacaaggat
ttgaagtttttgtcacacagatcttttacttccttggtaagagttacagc
aagatattttatactatttgtgtccattgtgagggatgttatttccctaa
tttctttctcagcccatttatcatttgtatataggaaggctactgatttg
ttgaggtaatttttttaatcttcctcctttggtgaagttgtttatcagtt
gtaggaggtcttcgtatatttgggggtgcttatgtctactatcatatcct
atgccaatacctgataccttggaatccttcctttcccaattggggttccc
ttaaaatctgggttggtggctcaatggcctctaccccgaccttccaggta
cttatttggaatgataggagagaagagtgtgacacctgtcctggaacctg
gagttataggaagccccctcacacttccgccccatcaattatcagacgtc
gtaactgcgttgtttgtgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145606740_145607413
seq2: B6Ng01-001L12.b_89_850

seq1  CTGGTCCTCAGTATATACCATAATCCTGAAGAAGTGGGCTCTAATGCCAA  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGGTCCTCAGTATATACCATAATCCTGAAGACGTGGGCTCTAATGCCAA  50

seq1  TGAAGGAGTGGATTTGCTAGGAAGGG------------------------  76
      |||| |||||||||||||||||||||                        
seq2  TGAAAGAGTGGATTTGCTAGGAAGGGAGGGAAGAAACAGGGATACATACG  100

seq1  -----------------------------ACATACATAC-----------  86
                                   ||||||||||           
seq2  TACATACATACATACATACATACATACATACATACATACACACATACAGA  150

seq1  -----------------------------------------AGAGAGAGA  95
                                               |||||||||
seq2  GAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  200

seq1  GAGAGAGAGAGAGAGAGCGAGCTTCCTTCTTCTATGTCCTTTATACAGGC  145
      ||||||||||||||||| | ||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGCGCTTCCTTCTTCTATGTCCTTTATACAGGC  250

seq1  TGTCAACAGAAGGTGTGGTCTAAATTAAAGGTGGGTCTTTCCACCTCGAA  195
      ||||||||||||||||||||||||||||||||||||||||||||  | ||
seq2  TGTCAACAGAAGGTGTGGTCTAAATTAAAGGTGGGTCTTTCCACTGCAAA  300

seq1  GATTTGACCTTCTCACTTCAAATGATCCAATTAAGCAAAACAAA------  239
      ||||||||||||||||||||||||||||||||||||||||||||      
seq2  GATTTGACCTTCTCACTTCAAATGATCCAATTAAGCAAAACAAAACAATA  350

seq1  --------------ACAAAACAAAACAAAACAAAACAAAACAAAGCAAAA  275
                    |||| |||| |||| |||| |||||||||| |||||
seq2  CAATACAATACAATACAATACAATACAATACAATACAAAACAAAACAAAA  400

seq1  CTCCCTCTCAATTGTATCTAGACATTTCTGAGTTACAGTTAATTCCAGAT  325
       |||| |||||||||||| ||||||||||||| | |||||||||||||||
seq2  ATCCCACTCAATTGTATCCAGACATTTCTGAGATGCAGTTAATTCCAGAT  450

seq1  GAAGACAGGTTGATAACCAAGAATAACCATCACAGAAGGTGTTCAAAACG  375
      |  |||||||||||||||||||||||||||||||||||||          
seq2  GTGGACAGGTTGATAACCAAGAATAACCATCACAGAAGGT----------  490

seq1  AAGGAAATGTTTAAAGATAAACCACATTCTGGTATTCTAGCCAGTTTTAT  425
             ||||||| |||||||||||||||||||||||||||||||||||
seq2  ------TTGTTTAAGGATAAACCACATTCTGGTATTCTAGCCAGTTTTAT  534

seq1  GTGTAATAATTACTAACTTGCAAGTATTTGGGAAAACT-GGAGAAACATT  474
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  GTGTAATAATTACTAACTTGCAAGTA-TTGGGAAAACTGGGAGAAACATT  583

seq1  TACTCCTCCAAACTGTCTTACTATACTTGCTAAACAAAGCAGTGTTTATT  524
      |||| |||| ||||||    | ||||||||||| |||||||||| |||||
seq2  TACTTCTCCGAACTGT----CCATACTTGCTAAGCAAAGCAGTG-TTATT  628

seq1  TATTTTTCATAATATACTTAGTACCAAATTGGCTTATAAGTAAGTGCTCA  574
      || |||||||||||||||||||| ||||||||| |||||||||||| |||
seq2  TA-TTTTCATAATATACTTAGTATCAAATTGGC-TATAAGTAAGTGTTCA  676

seq1  TGTAAACTAAAGTTGTAAACTTGACCCAGATTTATTTTGGCTCATAATAA  624
      |||||||||||||||| |||||||||||||     |||||||||||   |
seq2  TGTAAACTAAAGTTGT-AACTTGACCCAGA-----TTTGGCTCATA--TA  718

seq1  AACTGAAATTTAAAGGAACAAAATAAAGGTAAATGACAAAAAGTCTATTT  674
      ||||| |||||||||||   |||||| |   |||||| ||||||||||||
seq2  AACTG-AATTTAAAGGA--CAAATAATG--TAATGAC-AAAAGTCTATTT  762