BAC Information

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BAC

Clone NameB6Ng01-001L20
Chromosome4 (Build37)
Map Location 71,058,195 - 71,059,339
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk5rap2, Megf9, LOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001L20.bB6Ng01-001L20.g
ACCDH839974DH839975
length1,2401,147
definitionDH839974|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L20, 5' end.DH839975|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagagaatttctgtacagatagtgtagcatgcttccttggtaaa
caagagccataatgggagcataagaatgccctccaaatgacttatgaacg
aaaggacattattccagccagtggaagcagtgcttagaagatatggtcat
aaacaggtgtggtggtactggtttgggcctctgctttaagcattatgaca
tataactgaggttgagttatttaccctaaaagaaattactggcatgaggg
aggaattgcagtgtatgaaatacatgtggatgctatcattcacctgaggc
tctgtggttttctagaagaagtgagagagaggacaggatggagatgctga
ctttgtgttttcacagctggtaatgtgaaagggaaagagagtgtaagcta
cactcatgctgaagtgcactcatgggattccaaaccttgcagcctatagg
aagaaacaacattactggtaaataaagcatggtagaaaccaataaatata
accaaattgagtttacctttgaaagagaaaaagggacaatccatgattca
gtatgtgtggaggctttaataatgtctcaacaaaataagtgttgataaac
aaggcatgttatgcccttgaacttgttaaatgtgcaaggctttatgcaaa
acaaactcacacagtctcatacttgatgttataagacaagggaggatgga
attagcctgatttctgtgaaaggagaaagctctgtaattcaactcctctc
ctcaccactgttggaattgttatgtggctgtttgctttgagttgaaacat
tctattatgactcagaggataaagaaaatccacaaatctcaaagagctcc
agccacttatgtgtcttctctcagttacgtaagtattgaagattctctac
tgactgacctgccttctgcctgctagtcattcaaagtaatccatggatgg
agctgtcataaaccatcccacaagctgtggtgggcattttggatgctgct
gctttgagtcatctatggacctgcaaatcctcctccattctactctgtaa
gtaactacaaggacctcactgtttcattagctaaaatgggtgaaattttc
ttccctctggctcatgcattaattgtcacaccacgctagaaagtcacgag
acatcttgatgtctgacatggattcacaatcaaaatggagaacacatgtg
aaatacatggcctcctgcgtccaagtaccagtgcttgaag
gaattcaggtccaaatgtttgtgaatcaaccattttatcaactgtgctat
atcctcagtctcttaacttttacagtagaaaattataactgattataatg
acataaaattataaacaataggtttggagtatttgtatcatattatatat
agtttatattgtgtgtcttatatataatattttgattatatattttaatg
tcttatacttgcatatctcctaagtatacatttttacttaaaatgttttt
attataatttcaaatatgctccccaaatttatttttagaaatagccaatc
tcacaggattttttttctaacgatgaaaacttttaggaggttgtgtaagg
atatgggaaacaaaaatgctttatatgtaccttttaaataatttaattaa
gtaataatattattcctcatctgtactaagctaagattctccagaaatca
aaacactggataaaactcaagacatagctgtattcttgtttgtgtgattt
taggagtaaagagaccctaagtctgcaaatatactttctgttaacaccta
cctaaaaacaggtttaaaaagaaaggtttggttctttgcctgtttttttc
ttattctcctatcaagtccatctagcttgctatggagagattatatttct
attgggactacaatatagatgatagatcatttgagttatccagccttgtg
gattgaatgactaccagattcttaacctttctattgaataacagacacta
cttgattagccagattgtagcctataagccaactaaaatttttcatatat
atattatataaatatataatcatatcatatatcatatattacaatgtatt
ctaaaatgcatatatattatgacatgttatatattatattatgcataata
taatataacataatcataatatgggcatatgattacaactttctttatta
cttagctgtctctaggatgagattggatatggggtgtgtggagtattaaa
acatatataatatttatatggtgtatttgactttttcctctatggataaa
gaaagctctgaaggccgggaggtgtgtcagggaatttcctctatatagtc
ctgaaagactttatgggaactatgaagaaaagcttggaatgttctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_71058195_71059339
seq2: B6Ng01-001L20.g_66_1212

seq1  GAATTCAGGTCCAAATGTTTGTGAATCAACCATTTTATCAACTGTGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCAAATGTTTGTGAATCAACCATTTTATCAACTGTGCTAT  50

seq1  ATCCTCAGTCTCTTAACTTTTACAGTAGAAAATTATAACTGATTATAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGTCTCTTAACTTTTACAGTAGAAAATTATAACTGATTATAATG  100

seq1  ACATAAAATTATAAACAATAAATTTGTAGTATTTGTATCATATTATATAT  150
      ||||||||||||||||||||  |||| |||||||||||||||||||||||
seq2  ACATAAAATTATAAACAATAGGTTTGGAGTATTTGTATCATATTATATAT  150

seq1  AGTTTATATTGTGTGTCTTATATATAATATTTTGATTATATATTTTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATATTGTGTGTCTTATATATAATATTTTGATTATATATTTTAATG  200

seq1  TCTTATACTTGCATATCTCCTAAGTATACATTTTTACTTAAAATGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATACTTGCATATCTCCTAAGTATACATTTTTACTTAAAATGTTTTT  250

seq1  ATTATAATTTCAAATATGCTCCCCAAATTTATTTTTAGAAATAGCCAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTTCAAATATGCTCCCCAAATTTATTTTTAGAAATAGCCAATC  300

seq1  TCACAGGATTTTTTTTCTAACGATGAAAACTTTTAGGAGGTTGTGTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGATTTTTTTTCTAACGATGAAAACTTTTAGGAGGTTGTGTAAGG  350

seq1  ATATGGGAAACAAAAATGCTTTATATGTACCTTTTAAATAATTTAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGAAACAAAAATGCTTTATATGTACCTTTTAAATAATTTAATTAA  400

seq1  GTAATAATATTATTCCTCATCTGTACTAAGCTAAGATTCTCCAGAAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATATTATTCCTCATCTGTACTAAGCTAAGATTCTCCAGAAATCA  450

seq1  AAACACTGGATAAAACTCAAGACATAGCTGTATTCTTGTTTGTGTGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGGATAAAACTCAAGACATAGCTGTATTCTTGTTTGTGTGATTT  500

seq1  TAGGAGTAAAGAGACCCTAAGTCTGCAAATATACTTTCTGTTAACACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTAAAGAGACCCTAAGTCTGCAAATATACTTTCTGTTAACACCTA  550

seq1  CCTAAAAACAGGTTTAAAAAGAAAGGTTTGGTTCTTTGCCTGTTTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAACAGGTTTAAAAAGAAAGGTTTGGTTCTTTGCCTGTTTTTTTC  600

seq1  TTATTCTCCTATCAAGTCCATCTAGCTTGCTATGGAGAGATTATATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCCTATCAAGTCCATCTAGCTTGCTATGGAGAGATTATATTTCT  650

seq1  ATTGGGACTACAATATAGATGATAGATCATTTGAGTTATCCAGCCTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGACTACAATATAGATGATAGATCATTTGAGTTATCCAGCCTTGTG  700

seq1  GATTGAATGACTACCAGATTCTTAACCTTTCTATTGAATAACAGACACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAATGACTACCAGATTCTTAACCTTTCTATTGAATAACAGACACTA  750

seq1  CTTGATTAGCCAGATTGTAGCCTATAAGCCAACTAAAATTTTTCATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTAGCCAGATTGTAGCCTATAAGCCAACTAAAATTTTTCATATAT  800

seq1  ATATTATATAAATATATAATCATATCATATATCATATATTACAATGTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATAAATATATAATCATATCATATATCATATATTACAATGTATT  850

seq1  CTAAAATGCATATATATTATGACATGTTATATATTATATTATGCATAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGCATATATATTATGACATGTTATATATTATATTATGCATAATA  900

seq1  TAATATAACATAATCATAATATGGCCATATGATTACAACTTTCTTTATTA  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAATATAACATAATCATAATATGGGCATATGATTACAACTTTCTTTATTA  950

seq1  CTTAGCTGTCTCTA-GATGAGATTGGATAT-GTGTGTGT-GAGTA-TAAA  996
      |||||||||||||| ||||||||||||||| | |||||| ||||| ||||
seq2  CTTAGCTGTCTCTAGGATGAGATTGGATATGGGGTGTGTGGAGTATTAAA  1000

seq1  ACATATATTAATAATTAATAT-GTGTATTTGA-TTTTTCCTCTATGGATA  1044
      ||||||| |||| ||| |||| |||||||||| |||||||||||||||||
seq2  ACATATA-TAAT-ATTTATATGGTGTATTTGACTTTTTCCTCTATGGATA  1048

seq1  AAGAGAGCTCTTGAGGCCAGGA-GTGTGTCAAGGGATTTTCTCTATATAG  1093
      |||| ||||||  ||||| ||| |||||||| || |||| ||||||||||
seq2  AAGAAAGCTCTGAAGGCCGGGAGGTGTGTCAGGGAATTTCCTCTATATAG  1098

seq1  TCCTGAGAGGACATTATGGGAAACTATGAAAGAAAAGCTTGGAATGTTCT  1143
      |||||| | ||| ||||||| ||||||| |||||||||||||||||||||
seq2  TCCTGA-AAGACTTTATGGG-AACTATG-AAGAAAAGCTTGGAATGTTCT  1145

seq1  GG  1145
      ||
seq2  GG  1147