BAC Information

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BAC

Clone NameB6Ng01-002N21
Chromosome4 (Build37)
Map Location 94,988,735 - 95,144,180
singlet/doubletdoublet
Overlap genenone
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
Downstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002N21.bB6Ng01-002N21.g
ACCDH840764DH840765
length1,1921,123
definitionDH840764|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N21, 5' end.DH840765|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,988,735 - 94,989,951)(95,143,044 - 95,144,180)
sequence
gaattcttttccagaggagccctttaaaaaagtttatttttattgtatgt
gaatgagtgtttgtttgcatggatgtatttgtaccatgtgtgttcctggt
gcctgtgtaagccagaagagagcttcaggtccccaggaactgtagttaaa
atggtcatgagctgctatgctgatgctgggaactgaacataggtcctctg
caagagtaagacatgttctgaactactgagccatccttaacccccaaacc
aacaccagcacagaagacttttctttttctttattatttctctttctcac
tcttttttggaacagagttttatgtggaacaagatacaagaaatacttca
atcaagaaaatcaaatcaatacatcaatcaagaaaaacaaacaaaaaaat
aatgaacatgaccaaaatgtgtaagaactcagggaattattcaacagaac
cctaagaatagaaagagataaggtgaaaagtaaaattacagagaatctat
tcaatgaaaatatagcaggatattcttcaaatatatagataaaaatggac
atccaattgcaagaggcttttaggactccagatagacatgatcagagaat
aatactagagcaaacatgttaaaatacaaatataattaaaagttgttcaa
ggaaaataccaaatcacctacaaagataaatacattacaacaatatcaga
tctttcatcagcagtcagaaaaactagaaaagcatggaacaatatatttc
aagccatgaaggcgaataagtcttaaagcaagctggcatctcctataaca
ttttaaaattgacagagaactaagaatatctcaagatagctcaaaataat
ttcatgatcattaagccagaattgcagaagatacttaaaggaatactgta
tacagagaaagaagagtgatacgtgcactcataggaacacaaggaaaagc
aagtttcatgagacagatgacatagagaccaagtcatgcttgcttctatc
caatacagtaaacatcaaacactatatcacagggaaagtagaacaaaaca
atatctgatcacaaaaaccaacagactgcaggatgtgaacattctctcaa
attacagtggtgagagtgaaggtggtagcatccatcagcaatgcaatcaa
accagcctgcatatctattcaatattctgtataagagatact
gaattcaaaacaaggactcttcttttccattttgtttgtccttttttttt
taaagcaaatttagcatacaataatcattgctgaggataagaaagggaga
cgaatgaataagaagcatttcagctctgcaaaacacacaattgacgcctg
cactttgctttagttttcttgagttttaaaacctgaatggtcccataacc
agctgaagatgtgaattgtgatgtcaagccccccagtctcagggcagagc
agtttgcagagcaggctgccaggtgcctgctcagaaggctgctcagatgt
tacaacacgtggcagttttatacatacacacacattgcttccaaaatact
aagataaatgacatatttcacgtggggctaaagaagatagatgataggaa
gatgtctgaaaaaacaaaggaggaattttagatgggatgtagggaaagag
gtgatctttgggatataactgaagaatgcagatgctccagatgtgcaaag
aaccaaggcagagcatcctgtacagggagatgggatggcatttgcaaaga
ctgagaccaggaaaaggccaggcttgactgtgtgctgtccatgtaggtgc
acaaacacagatgtcctcagtggcctctcagaaacctaagctcttctcaa
atgtagtgtctcttagccttggtagtggactccacatctgtcttgtgctg
aagagtacagcaaggacatggctgtcatacccaggtggcagttggtgatg
cactcctacagcaatactctttttttcaagtctgagattcctagccacaa
tcccacagcgaggagctgcagttgatcctaaaaccaagctttctcccacg
ccaaaccatcgacttggtgccagggctggatttattacctagtaactgag
gacagaaaataattggtcgcatagtgcctggcagctgcgctggggctcca
ctctaggaagggagtcagggactaaagactgagacaagtttactttttct
cagcccagtgctcttctgaggccgcccagtcctaatgaacactgcaggca
agtctgtgcagctgaacagcggtccctacttgcagtcccggttcttcacc
ctgaaagaagcatagctaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_94988735_94989951
seq2: B6Ng01-002N21.b_50_1241

seq1  GAATTCTTTTCCAGAGGAGCCCTTTAAAAAAGTTTATTTTTATTGTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCAGAGGAGCCCTTTAAAAAAGTTTATTTTTATTGTATGT  50

seq1  GAATGAGTGTTTGTTTGCATGGATGTATTTGTACCATGTGTGTTCCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTGTTTGTTTGCATGGATGTATTTGTACCATGTGTGTTCCTGGT  100

seq1  GCCTGTGTAAGCCAGAAGAGAGCTTCAGGTCCCCAGGAACTGTAGTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTAAGCCAGAAGAGAGCTTCAGGTCCCCAGGAACTGTAGTTAAA  150

seq1  ATGGTCATGAGCTGCTATGCTGATGCTGGGAACTGAACATAGGTCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCATGAGCTGCTATGCTGATGCTGGGAACTGAACATAGGTCCTCTG  200

seq1  CAAGAGTAAGACATGTTCTGAACTACTGAGCCATCCTTAACCCCCAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTAAGACATGTTCTGAACTACTGAGCCATCCTTAACCCCCAAACC  250

seq1  AACACCAGCACAGAAGACTTTTCTTTTTCTTTATTATTTCTCTTTCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGCACAGAAGACTTTTCTTTTTCTTTATTATTTCTCTTTCTCAC  300

seq1  TCTTTTTTGGAACAGAGTTTTATGTGGAACAAGATACAAGAAATACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGGAACAGAGTTTTATGTGGAACAAGATACAAGAAATACTTCA  350

seq1  ATCAAGAAAATCAAATCAATACATCAATCAAGAAAAACAAACAAAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAAATCAAATCAATACATCAATCAAGAAAAACAAACAAAAAAAT  400

seq1  AATGAACATGACCAAAATGTGTAAGAACTCAGGGAATTATTCAACAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACATGACCAAAATGTGTAAGAACTCAGGGAATTATTCAACAGAAC  450

seq1  CCTAAGAATAGAAAGAGATAAGGTGAAAAGTAAAATTACAGAGAATCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAATAGAAAGAGATAAGGTGAAAAGTAAAATTACAGAGAATCTAT  500

seq1  TCAATGAAAATATAGCAGGATATTCTTCAAATATATAGATAAAAATGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAAAATATAGCAGGATATTCTTCAAATATATAGATAAAAATGGAC  550

seq1  ATCCAATTGCAAGAGGCTTTTAGGACTCCAGATAGACATGATCAGAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTGCAAGAGGCTTTTAGGACTCCAGATAGACATGATCAGAGAAT  600

seq1  AATACTAGAGCAAACATGTTAAAATACAAATATAATTAAAAGTTGTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAGAGCAAACATGTTAAAATACAAATATAATTAAAAGTTGTTCAA  650

seq1  GGAAAATACCAAATCACCTACAAAGATAAATACATTACAACAATATCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATACCAAATCACCTACAAAGATAAATACATTACAACAATATCAGA  700

seq1  TCTTTCATCAGCAGTCAGAAAAACTAGAAAAGCATGGAACAATATATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATCAGCAGTCAGAAAAACTAGAAAAGCATGGAACAATATATTTC  750

seq1  AAGCCATGAAGGCGAATAAGTCTCAAAGCAAGCTGGCATCTCCTATAACA  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGCCATGAAGGCGAATAAGTCTTAAAGCAAGCTGGCATCTCCTATAACA  800

seq1  TTTTAAAATTGACAGAGAACTAAGAATATCTCAAGATAGCTCAAAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTGACAGAGAACTAAGAATATCTCAAGATAGCTCAAAATAAT  850

seq1  TTCATGATCATTAAGCCAGAATTGCAGAAGATACTTAAAGGAATACTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATCATTAAGCCAGAATTGCAGAAGATACTTAAAGGAATACTGTA  900

seq1  TACAGAGAAAGAAGAGTGATACGTGCACTCATAGGAACACAAGGAAAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAAGAAGAGTGATACGTGCACTCATAGGAACACAAGGAAAAGC  950

seq1  AAGTTTCATGAGACAGATGAACATAGAAGACCAAGTCATGCCTTGCTTCT  1000
      ||||||||||||||||||| |||||| ||||||||||||| |||||||||
seq2  AAGTTTCATGAGACAGATG-ACATAG-AGACCAAGTCATG-CTTGCTTCT  997

seq1  ATCCAATACAGTAAACAATCAAACACCTAATAT-TCACAGGGGAAAAGTA  1049
      |||||||||||||||| |||||||||    ||| ||||||||  ||||||
seq2  ATCCAATACAGTAAAC-ATCAAACAC----TATATCACAGGG--AAAGTA  1040

seq1  GAAC-AAACAATAATCTGATCAACCAAAAACACAACAGAACTGCAGGAAT  1098
      |||| ||||||| |||||||||  ||||||| |||||| |||||||||  
seq2  GAACAAAACAAT-ATCTGATCA--CAAAAAC-CAACAG-ACTGCAGGA--  1083

seq1  TTGTGAACA-TCTCTCAACACCCACAGT-GTGAGAGTTGAAGGTTGGTAG  1146
       |||||||| |||||||  |   ||||| ||||||| |||||| ||||||
seq2  -TGTGAACATTCTCTCA--AATTACAGTGGTGAGAG-TGAAGG-TGGTAG  1128

seq1  CCAATCCATCAAGCAAATGCAAATCAAAACCAAGCTGGCATATCTATTTC  1196
      |  ||||||| ||| ||||| |||||||  | |||  ||||||||| |||
seq2  C--ATCCATC-AGC-AATGC-AATCAAA--CCAGCCTGCATATCTA-TTC  1170

seq1  AATAATCTG-ATAAAGGATACT  1217
      |||| |||| ||||  ||||||
seq2  AATATTCTGTATAAGAGATACT  1192

seq1: chr4_95143044_95144180
seq2: B6Ng01-002N21.g_68_1190 (reverse)

seq1  TGCCTTAGCTAGTGCTTTTCTTTCAGAGGTTGGAAAGAAACCGGGACTCT  50
      ||||||||||| |||  ||||||||| |||  |||   ||||||||  ||
seq2  TGCCTTAGCTA-TGC--TTCTTTCAG-GGT--GAA--GAACCGGGA--CT  40

seq1  GCAAGTGGGGAACCGGCCTG-TCAGCTGCACGGGCCTTGGCTTGCAGTGT  99
      |||||| ||| ||||  ||| |||||||||| | |  | || ||||||||
seq2  GCAAGTAGGG-ACCG--CTGTTCAGCTGCACAGAC--TTGCCTGCAGTGT  85

seq1  TCATTAGGGCTGGGCGGGCCTCAGGAGAGCACCTGGGCTGAG-AAAAGTA  148
      |||||||| |||||| |||||||| |||||| |||||||||| |||||||
seq2  TCATTAGGACTGGGC-GGCCTCAGAAGAGCA-CTGGGCTGAGAAAAAGTA  133

seq1  AACTTGTCTCAGTTCTTTAGTCCCTGACTCCCTT-CTAGAGTGGAGCCCC  197
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  AACTTGTCTCAG-TCTTTAGTCCCTGACTCCCTTCCTAGAGTGGAGCCCC  182

seq1  AGCGCAGCTGCCAGGCACTAATGCGACCAATTA-TTTCTGTCCTCAGTTA  246
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  AGCGCAGCTGCCAGGCACT-ATGCGACCAATTATTTTCTGTCCTCAGTTA  231

seq1  CTAGGTAATAAATCCAGCCCTGGCACCAAGTCGATGGTTTGGCGTGGGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAATAAATCCAGCCCTGGCACCAAGTCGATGGTTTGGCGTGGGAG  281

seq1  AAAGCTTGGTTTTAGGATCAACTGCAGCTCCTCGCTGTGGGATTGTGGCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGGTTTTAGGATCAACTGCAGCTCCTCGCTGTGGGATTGTGGCT  331

seq1  AGGAATCTCAGACTTG-AAAAAAGAGTATTGCTGTAGGAGTGCATCACCA  395
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGAATCTCAGACTTGAAAAAAAGAGTATTGCTGTAGGAGTGCATCACCA  381

seq1  ACTGCCACCTGGGTATGACAGCCATGTCCTTGCTGTACTCTTCAGCACAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCACCTGGGTATGACAGCCATGTCCTTGCTGTACTCTTCAGCACAA  431

seq1  GACAGATGTGGAGTCCACTACCAAGGCTAAGAGACACTACATTTGAGAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGTGGAGTCCACTACCAAGGCTAAGAGACACTACATTTGAGAAG  481

seq1  AGCTTAGGTTTCTGAGAGGCCACTGAGGACATCTGTGTTTGTGCACCTAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGTTTCTGAGAGGCCACTGAGGACATCTGTGTTTGTGCACCTAC  531

seq1  ATGGACAGCACACAGTCAAGCCTGGCCTTTTCCTGGTCTCAGTCTTTGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGCACACAGTCAAGCCTGGCCTTTTCCTGGTCTCAGTCTTTGCA  581

seq1  AATGCCATCCCATCTCCCTGTACAGGATGCTCTGCCTTGGTTCTTTGCAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATCCCATCTCCCTGTACAGGATGCTCTGCCTTGGTTCTTTGCAC  631

seq1  ATCTGGAGCATCTGCATTCTTCAGTTATATCCCAAAGATCACCTCTTTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGCATCTGCATTCTTCAGTTATATCCCAAAGATCACCTCTTTCC  681

seq1  CTACATCCCATCTAAAATTCCTCCTTTGTTTTTTCAGACATCTTCCTATC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCCATCTAAAATTCCTCCTTTGTTTTTTCAGACATCTTCCTATC  731

seq1  ATCTATCTTCTTTAGCCCCACGTGAAATATGTCATTTATCTTAGTATTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTTCTTTAGCCCCACGTGAAATATGTCATTTATCTTAGTATTTT  781

seq1  GGAAGCAATGTGTGTGTATGTATAAAACTGCCACGTGTTGTAACATCTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAATGTGTGTGTATGTATAAAACTGCCACGTGTTGTAACATCTGA  831

seq1  GCAGCCTTCTGAGCAGGCACCTGGCAGCCTGCTCTGCAAACTGCTCTGCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTCTGAGCAGGCACCTGGCAGCCTGCTCTGCAAACTGCTCTGCC  881

seq1  CTGAGACTGGGGGGCTTGACATCACAATTCACATCTTCAGCTGGTTATGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTGGGGGGCTTGACATCACAATTCACATCTTCAGCTGGTTATGG  931

seq1  GACCATTCAGGTTTTAAAACTCAAGAAAACTAAAGCAAAGTGCAGGCGTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTCAGGTTTTAAAACTCAAGAAAACTAAAGCAAAGTGCAGGCGTC  981

seq1  AATTGTGTGTTTTGCAGAGCTGAAATGCTTCTTATTCATTCGTCTCCCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTGTTTTGCAGAGCTGAAATGCTTCTTATTCATTCGTCTCCCTT  1031

seq1  TCTTATCCTCAGCAATGATTATTGTATGCTAAATTTGCTTTAAAAAAAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCCTCAGCAATGATTATTGTATGCTAAATTTGCTTTAAAAAAAAA  1081

seq1  AGGACAAACAAAATGGAAAAGAAGAGTCCTTGTTTTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAACAAAATGGAAAAGAAGAGTCCTTGTTTTGAATTC  1123