BAC Information

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BAC

Clone NameB6Ng01-003B09
Chromosome4 (Build37)
Map Location 131,601,765 - 131,743,266
singlet/doubletdoublet
Overlap geneEpb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230
Downstream geneLOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003B09.bB6Ng01-003B09.g
ACCDH840911DH840912
length1,0351,148
definitionDH840911|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B09, 5' end.DH840912|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,742,226 - 131,743,266)(131,601,765 - 131,602,940)
sequence
gaattcactttgtagaccactcaggctccgcctggaactctcagagatca
tctgcctttgcctcctgagaactgaggtcaaaggtgggtgcaccacagct
ggacagccctttttccttttagaaaccttgtagttttgagtttgtacgtt
tattattttctttcaggcaaggtcttatttcatagtccagactagtttca
gatttatgatctttctgcctcggcattctcaaatactggcattgttggtg
tatgtaatcacattgactattaagttttgtaaaaattgtgtacaaaatta
ctcaaagtttttatttggggtaagaagttggaggttctggtctataaagt
tttaatttagatattttttagctaactgttttaactctttttcttacctc
cttaggaacgtcaaggtcgtgggaaatagaaagcggttctgcatagactg
cagcaacggttgcatctccttatcctaagaggacacgatgacctgcaaga
aaattaggactttttttcttaatttcattgacttcagagacaattgcaaa
cttgcagtttatgtattggaatttcacaaaagacataggacttaactgga
aaatggaaaaaaaaaaggaaaaaaagaaaaagaaaaaacctaaacaaaaa
ttccctctaggtagtttaggtaaaaaaatgtcccttttattttggctttg
gttgtgattcagagcataatgctttggtttttttttttgttttttttttt
ttttttgtctttttactctatttttcggatttttaagtccgtaagtgcat
acaattttctcttaatttttaaaccctttcctcccccattttgacatttg
cacttggaagaacacttgagttgcgcagattttgggtgtccaccccagaa
agtgggaatttggttttccttccgaactggaagaaaaattttttatgaag
atttttgtctaggaaagttaataacagtgtacccaagttgtgtctgtaag
ggtgctcatttctctgacctttgttctcaaagtaa
gaattccctcataaaaaacgaacacatggcaaagccacagcgcaggtgac
agatcaagaaatataactgacaacaaaaaaacaacacatacacttggcat
ctggctccccctctagctaaaagctatcataaacgcatcaaagcactacc
ttctagtaattcggggttattttataatgtctgtaattcatcaacaaaat
ggggaaatccttgtaaaaatttcatctttgcagattttactcagacaaaa
aagcaaaaccattcataagaaaagagtagttgaagctgttcttacttagc
tcacaaacaaaacaaaaatgactgatgtcatgcccaggtactcggtgggg
gaaaaacatgtcctatggaagtatcgatgaatccacatctgaatatgcat
ttgacaatcacgaacccagtaagactcctggaaaagtacactggcagctc
taccagtgagcaccagcctgctccttagataacaaggaaacagactgagt
ctaaacagactgatttcagaaccacactccggccctgatattttcaagtc
atgaaatcaggccatgatcaccaatttgatatattcaaaaagtaatgaga
atggtgttggagagatggacttatcagttacaagcactggtcactcttcc
agaggatctgagttcaattcccagtactcacataggagctaacactgtct
gtaactccattccctcccacagacatacatgcaagtgggcaagcaccaat
acacataaaataattatttttaaaaataaaaatgagaaaactctacacat
cccaacaaaatttataggtagcatattttagatcccaatctgatgacaga
tgatgcccctattctgacctccaaaggtaccaggcatacacaatctgtta
tcaaggtatctgcaaaaaaactccaagaatcttgtggctttagacagtgc
ctgggacaatttactctgagctttcttaggacaggaggaggaaagcaata
gcatctaattgcactgtctttcagagtatgaatcttgtatgaataagacc
atgacttctgggactggagagatgctcatggttagagcactgttgctctt
gcgagaatgatcaggcggacccatgatagctaaacacggctgtaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131742226_131743266
seq2: B6Ng01-003B09.b_48_1082 (reverse)

seq1  TTACTTTGAGTAACAAAGGGTCAGAGAAAATGAGCCACCCTTACAGACAC  50
      |||||||||| |||||| |||||||| ||||||| |||||||||||||||
seq2  TTACTTTGAG-AACAAA-GGTCAGAG-AAATGAG-CACCCTTACAGACAC  46

seq1  AACCTTGGGTAACACTGTTATTAAACTTTCCTAGACAAAAATTCTTCATA  100
      || ||||||| ||||||||||| |||||||||||||||||| ||||||||
seq2  AA-CTTGGGT-ACACTGTTATT-AACTTTCCTAGACAAAAA-TCTTCATA  92

seq1  AAAA--TTTTCTTCCAGTTCGGAAGGGAAAAATCAAATTCCCACTTTCTG  148
      ||||  ||||||||||||||||||||  |||| |||||||||||||||||
seq2  AAAAATTTTTCTTCCAGTTCGGAAGG--AAAACCAAATTCCCACTTTCTG  140

seq1  GGGTGGACACCCAAAATCTGCGCAACTCAAGTGTTC-TCCAAGTGCAAAT  197
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGTGGACACCCAAAATCTGCGCAACTCAAGTGTTCTTCCAAGTGCAAAT  190

seq1  GTCAAAATGGGGGAGGAAAGGGTTTAAAAATTAAGAGAAAATTGTATGCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATGGGGGAGGAAAGGGTTTAAAAATTAAGAGAAAATTGTATGCA  240

seq1  CTTACGGACTTAAAAATCCGAAAAATAGAGTAAAAAGACAAAAAAAAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGGACTTAAAAATCCGAAAAATAGAGTAAAAAGACAAAAAAAAAAA  290

seq1  AAAAAACAAAAAAAAAAACCAAAGCATTATGCTCTGAATCACAACCAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAAAAAAAACCAAAGCATTATGCTCTGAATCACAACCAAAG  340

seq1  CCAAAATAAAAGGGACATTTTTTTACCTAAACTACCTAGAGGGAATTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAAAAGGGACATTTTTTTACCTAAACTACCTAGAGGGAATTTTT  390

seq1  GTTTAGGTTTTTTCTTTTTCTTTTTTTCCTTTTTTTTTTCCATTTTCCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGTTTTTTCTTTTTCTTTTTTTCCTTTTTTTTTTCCATTTTCCAG  440

seq1  TTAAGTCCTATGTCTTTTGTGAAATTCCAATACATAAACTGCAAGTTTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCCTATGTCTTTTGTGAAATTCCAATACATAAACTGCAAGTTTGC  490

seq1  AATTGTCTCTGAAGTCAATGAAATTAAGAAAAAAAGTCCTAATTTTCTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTCTGAAGTCAATGAAATTAAGAAAAAAAGTCCTAATTTTCTTG  540

seq1  CAGGTCATCGTGTCCTCTTAGGATAAGGAGATGCAACCGTTGCTGCAGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCATCGTGTCCTCTTAGGATAAGGAGATGCAACCGTTGCTGCAGTC  590

seq1  TATGCAGAACCGCTTTCTATTTCCCACGACCTTGACGTTCCTAAGGAGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGAACCGCTTTCTATTTCCCACGACCTTGACGTTCCTAAGGAGGT  640

seq1  AAGAAAAAGAGTTAAAACAGTTAGCTAAAAAATATCTAAATTAAAACTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGAGTTAAAACAGTTAGCTAAAAAATATCTAAATTAAAACTTT  690

seq1  ATAGACCAGAACCTCCAACTTCTTACCCCAAATAAAAACTTTGAGTAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCAGAACCTCCAACTTCTTACCCCAAATAAAAACTTTGAGTAATT  740

seq1  TTGTACACAATTTTTACAAAACTTAATAGTCAATGTGATTACATACACCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACACAATTTTTACAAAACTTAATAGTCAATGTGATTACATACACCA  790

seq1  ACAATGCCAGTATTTGAGAATGCCGAGGCAGAAAGATCATAAATCTGAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCCAGTATTTGAGAATGCCGAGGCAGAAAGATCATAAATCTGAAA  840

seq1  CTAGTCTGGACTATGAAATAAGACCTTGCCTGAAAGAAAATAATAAACGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGGACTATGAAATAAGACCTTGCCTGAAAGAAAATAATAAACGT  890

seq1  ACAAACTCAAAACTACAAGGTTTCTAAAAGGAAAAAGGGCTGTCCAGCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCAAAACTACAAGGTTTCTAAAAGGAAAAAGGGCTGTCCAGCTG  940

seq1  TGGTGCACCCACCTTTGACCTCAGTTCTCAGGAGGCAAAGGCAGATGATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCACCCACCTTTGACCTCAGTTCTCAGGAGGCAAAGGCAGATGATC  990

seq1  TCTGAGAGTTCCAGGC-CAGCCTGAGTGGTCTACAAAGTGAATTC  1041
      ||||||||||||||||  |||||||||||||||||||||||||||
seq2  TCTGAGAGTTCCAGGCGGAGCCTGAGTGGTCTACAAAGTGAATTC  1035

seq1: chr4_131601765_131602940
seq2: B6Ng01-003B09.g_69_1216

seq1  GAATTCCCTCATAAAAAACGAACACATGGCAAAGCCACAGCGCAGGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCATAAAAAACGAACACATGGCAAAGCCACAGCGCAGGTGAC  50

seq1  AGATCAAGAAATATAACTGACAACAAAAAAACAACACATACACTTGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGAAATATAACTGACAACAAAAAAACAACACATACACTTGGCAT  100

seq1  CTGGCTCCCCCTCTAGCTAAAAGCTATCATAAACGCATCAAAGCACTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCCCCTCTAGCTAAAAGCTATCATAAACGCATCAAAGCACTACC  150

seq1  TTCTAGTAATTCGGGGTTATTTTATAATGTCTGTAATTCATCAACAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTAATTCGGGGTTATTTTATAATGTCTGTAATTCATCAACAAAAT  200

seq1  GGGGAAATCCTTGTAAAAATTTCATCTTTGCAGATTTTACTCAGACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATCCTTGTAAAAATTTCATCTTTGCAGATTTTACTCAGACAAAA  250

seq1  AAGCAAAACCATTCATAAGAAAAGAGTAGTTGAAGCTGTTCTTACTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACCATTCATAAGAAAAGAGTAGTTGAAGCTGTTCTTACTTAGC  300

seq1  TCACAAACAAAACAAAAATGACTGATGTCATGCCCAGGTACTCGGTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACAAAACAAAAATGACTGATGTCATGCCCAGGTACTCGGTGGGG  350

seq1  GAAAAACATGTCCTATGGAAGTATCGATGAATCCACATCTGAATATGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACATGTCCTATGGAAGTATCGATGAATCCACATCTGAATATGCAT  400

seq1  TTGACAATCACGAACCCAGTAAGACTCCTGGAAAAGTACACTGGCAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAATCACGAACCCAGTAAGACTCCTGGAAAAGTACACTGGCAGCTC  450

seq1  TACCAGTGAGCACCAGCCTGCTCCTTAGATAACAAGGAAACAGACTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTGAGCACCAGCCTGCTCCTTAGATAACAAGGAAACAGACTGAGT  500

seq1  CTAAACAGACTGATTTCAGAACCACACTCCGGCCCTGATATTTTCAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGACTGATTTCAGAACCACACTCCGGCCCTGATATTTTCAAGTC  550

seq1  ATGAAATCAGGCCATGATCACCAATTTGATATATTCAAAAAGTAATGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCAGGCCATGATCACCAATTTGATATATTCAAAAAGTAATGAGA  600

seq1  ATGGTGTTGGAGAGATGGACTTATCAGTTACAAGCACTGGTCACTCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTTGGAGAGATGGACTTATCAGTTACAAGCACTGGTCACTCTTCC  650

seq1  AGAGGATCTGAGTTCAATTCCCAGTACTCACATAGGAGCTAACACTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCTGAGTTCAATTCCCAGTACTCACATAGGAGCTAACACTGTCT  700

seq1  GTAACTCCATTCCCTCCCACAGACATACATGCAAGTGGGCAAGCACCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCCATTCCCTCCCACAGACATACATGCAAGTGGGCAAGCACCAAT  750

seq1  ACACATAAAATAATTATTTTTAAAAATAAAAATGAGAAAACTCTACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAAATAATTATTTTTAAAAATAAAAATGAGAAAACTCTACACAT  800

seq1  CCCAACAAAATTTATAGGTAGCATATTTTAGATCCCAATCTGATGACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCAACAAAATTTATAGGTAGCATATTTTAGATCCCAATCTGATGAC-AG  849

seq1  ATGATGCCCCTATTCTGACCTCCAAAGGTACCAGGCATACACAATCTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCCCCTATTCTGACCTCCAAAGGTACCAGGCATACACAATCTGTT  899

seq1  ATCAAGGTATCTGCAAAAAAAAACTCCAAGAATCTTGTGGCTTTTAGACA  950
      ||||||||||||||  ||||||||||||||||||||||||| ||||||||
seq2  ATCAAGGTATCTGC--AAAAAAACTCCAAGAATCTTGTGGC-TTTAGACA  946

seq1  GTGCCTGGAACAATTTAACTCTGAAGCTTTCTTAGGAACAGGAGGAAGGA  1000
      |||||||| ||||||| |||||| |||||||||||| |||||||| ||||
seq2  GTGCCTGGGACAATTT-ACTCTG-AGCTTTCTTAGG-ACAGGAGG-AGGA  992

seq1  AAGCAAATAGCATCTTAATTGCACTGTCTTTCAAGAGTATGAATC-TGTA  1049
      |||| ||||||||| ||||||||||||||||| |||||||||||| ||||
seq2  AAGC-AATAGCATC-TAATTGCACTGTCTTTC-AGAGTATGAATCTTGTA  1039

seq1  TGAAATAAAGACCATGAACTCTGGGACTGGAGAGATGGCTCAGTGGTTAA  1099
      ||||   ||||||||||  ||||||||||||||||| ||||| ||||| |
seq2  TGAA--TAAGACCATGACTTCTGGGACTGGAGAGAT-GCTCA-TGGTT-A  1084

seq1  GAGCACTTGTTGCTCTTGCAGAGGACATGAGTTCAAGTGCCAGAACCCAC  1149
      |||||| |||||||||||| |||   ||||  |||   | | ||   | |
seq2  GAGCAC-TGTTGCTCTTGC-GAG--AATGA--TCA---GGCGGA---CCC  1122

seq1  ATGATAGCTAACAACCGTCTGTAATTC  1176
      ||||||||||| |  || |||||||||
seq2  ATGATAGCTAA-ACACGGCTGTAATTC  1148