BAC Information

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BAC

Clone NameB6Ng01-003F23
Chromosome4 (Build37)
Map Location 27,743,877 - 27,892,175
singlet/doubletdoublet
Overlap geneLOC100040691
Upstream genenone
Downstream geneTpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003F23.bB6Ng01-003F23.g
ACCDH841108DH841109
length1,2131,175
definitionDH841108|Mus musculus domesticus DNA, BAC clone: B6Ng01-003F23, 5' end.DH841109|Mus musculus domesticus DNA, BAC clone: B6Ng01-003F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,743,877 - 27,745,118)(27,890,991 - 27,892,175)
sequence
gaattcatttttcttgaatataaaattattctgcattggagatgcttaaa
cttcatatttcttcaaatagccaactatgaagcttgaaagtcaaagaaat
atgaagaacttattgactatgtttaatttcagaaacctcatatgtaaact
ctagtagctgctggatttaaccgaagctgtgtggttagaggccacagttg
acttgacgtcacagattttgtaacttggtagctatgcaagcaataactgg
cccaataaggtttatgctagaaataatacctgctaagtgtatttgtagaa
tgcaattgcaactctgaaatgtatgctaattcattatttttaagttcaat
atatatttatactacagttttatgagtgttgttttactttttttgtaaaa
gctaagaaaatatttaatatagaccaatataaacctgctgttagtagtag
gctgaatgatataaacatatttatgtgtaagtggagtttaaaatatttta
aatgaaattttaaaataaagagtatatttgaacaaattggaaaattaact
tgtttttaatactcatcaaaactgataataaatcctttatctctgagttg
ccctgtgagacatagctatatcctagtgcctcttagtcttcttctttgtg
ttttgagcaattctgtctttccgtacctaaatattgaaataataatgtca
gctattcaaattaaacatcatttcacagatatgtggggcaaagccgataa
tcttacaataatattgaaactaaaaaaaaaaaccaaaaacaacagaatta
tagttatcacagatatatacttaataatcattgaattagtgaaaagtgac
acaataaataaagaatgtacttagcagtcaacatcgatgctaaattgtct
cttattctttcaaagggtttttaacaattatatatgaaatgcaggaaata
atttatataactaaatacatttcctgtagagatgtgagaaaatatgtctt
ttgtcccaagtgactatattgtgtcagatactctatttaggaaaattcag
acatggattttcacctgcttgcaactgttctacttgcatcctttaaatgg
attgattatttatgaaaatacctggtgaagatctacaaaatttagtgtgg
aatgtacaataaatttttcgatttctgatgatagcttacttgtccatgac
cagctgcagctta
gaattcagtcccttgattttgaaaacaacagtaccaaaatgaaatatgct
aaggactgatggctcaacgtagtgctaattcttatcaaaaatactgcttg
ccaataacgtttgagagtgttaaactgtggatggaaggaatatagttaca
ggaagtgaaaagaataattttcacaatgtaagcttacctttactaaaatt
ttctgtgtatggaataattaattgaacaatcaaggaatatgaagacgatg
ttgaaagaatacatgcaaagaagagttttgtctttattttagatgttccg
ttaagtttcatttttaaactgtactatataaataaaacatcacactcgtg
ttatgaaggtgagaacaagctgaatttgctgagtcaaaataagccagata
tgacaattgtctctttcctatgaagtggtttttattacaaaattttcttt
ttaaaggaaattgctttttgatctctcatctttcagaacaaacatttagc
tttattccagctcctaaacataatataaaaatagcaagttgtctaaaagg
tgttagaagatacacagtttaaatatacttatttttcttgcctttcaatt
tccttgaagactgattttcttactctttatcacagagccttagttaaaat
ttgatgctggatgtaaaaatgagcctttgaaaataaaatgcacttaaaga
cagttggaccatggccctgagtgtgctgcactggtttaggatttgagata
acttgttaaggacagtaaaattcccaaatggcaaattcagttgatgttga
catgtctcctgacgcttagaaattcacttgatgaaatttccagtaagcta
aatttactaacttaatttcacaattcatggttttcacatggttgcaatat
ttgattgtggtcaatactttaaaacaacgcatcacaaaccagaagaaatt
atataccagacagatgagaagtataatcaggcgggagccaatttttcata
atgctttatttattgattggcagagaataccagttgacaagagtaggcaa
gcagtaacagtaaatactgggggatggagtcatacatgggcgactgctat
agagctctacatttttcagaattgactttatctagcaggcctctttcaaa
ccctaagtacataaccatttatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27743877_27745118
seq2: B6Ng01-003F23.b_49_1261

seq1  GAATTCATTTTTCTTGAATATAAAATTATTCTGCATTGGAGATGCTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTCTTGAATATAAAATTATTCTGCATTGGAGATGCTTAAA  50

seq1  CTTCATATTTCTTCAAATAGCCAACTATGAAGCTTGAAAGTCAAAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATTTCTTCAAATAGCCAACTATGAAGCTTGAAAGTCAAAGAAAT  100

seq1  ATGAAGAACTTATTGACTATGTTTAATTTCAGAAACCTCATATGTAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAACTTATTGACTATGTTTAATTTCAGAAACCTCATATGTAAACT  150

seq1  CTAGTAGCTGCTGGATTTAACCGAAGCTGTGTGGTTAGAGGCCACAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGCTGCTGGATTTAACCGAAGCTGTGTGGTTAGAGGCCACAGTTG  200

seq1  ACTTGACGTCACAGATTTTGTAACTTGGTAGCTATGCAAGCAATAACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACGTCACAGATTTTGTAACTTGGTAGCTATGCAAGCAATAACTGG  250

seq1  CCCAATAAGGTTTATGCTAGAAATAATACCTGCTAAGTGTATTTGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAAGGTTTATGCTAGAAATAATACCTGCTAAGTGTATTTGTAGAA  300

seq1  TGCAATTGCAACTCTGAAATGTATGCTAATTCATTATTTTTAAGTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGCAACTCTGAAATGTATGCTAATTCATTATTTTTAAGTTCAAT  350

seq1  ATATATTTATACTACAGTTTTATGAGTGTTGTTTTACTTTTTTTGTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTATACTACAGTTTTATGAGTGTTGTTTTACTTTTTTTGTAAAA  400

seq1  GCTAAGAAAATATTTAATATAGACCAATATAAACCTGCTGTTAGTAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAAAATATTTAATATAGACCAATATAAACCTGCTGTTAGTAGTAG  450

seq1  GCTGAATGATATAAACATATTTATGTGTAAGTGGAGTTTAAAATATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGATATAAACATATTTATGTGTAAGTGGAGTTTAAAATATTTTA  500

seq1  AATGAAATTTTAAAATAAAGAGTATATTTGAACAAATTGGAAAATTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTTTAAAATAAAGAGTATATTTGAACAAATTGGAAAATTAACT  550

seq1  TGTTTTTAATACTCATCAAAACTGATAATAAATCCTTTATCTCTGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAATACTCATCAAAACTGATAATAAATCCTTTATCTCTGAGTTG  600

seq1  CCCTGTGAGACATAGCTATATCCTAGTGCCTCTTAGTCTTCTTCTTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGAGACATAGCTATATCCTAGTGCCTCTTAGTCTTCTTCTTTGTG  650

seq1  TTTTGAGCAATTCTGTCTTTCCGTACCTAAATATTGAAATAATAATGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGCAATTCTGTCTTTCCGTACCTAAATATTGAAATAATAATGTCA  700

seq1  GCTATTCAAATTAAACATCATTTCACAGATATGTGGGGCAAAGCCGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCAAATTAAACATCATTTCACAGATATGTGGGGCAAAGCCGATAA  750

seq1  TCTTACAATAATATTGAAACTAAAAAAAAAAACCAAAAACAACAGAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAATAATATTGAAACTAAAAAAAAAAACCAAAAACAACAGAATTA  800

seq1  TAGTTATCACAGATATATACTTAATAATCATTGAATTAGTGAAAAGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATCACAGATATATACTTAATAATCATTGAATTAGTGAAAAGTGAC  850

seq1  ACAATAAATAAAGAATGTACTTAGCAGTCAACATCGATGCTAAATTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAATAAAGAATGTACTTAGCAGTCAACATCGATGCTAAATTGTCT  900

seq1  CTTATTCTTTCAAAGGGTTTTTAACAATTATATATGAAATGCAGGAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTTTCAAAGGGTTTTTAACAATTATATATGAAATGCAGGAAATA  950

seq1  ATTTATAATAACTAAATACATTTCCTGTAGAGATGTGAG-AAATATGTC-  998
      |||||| |||||||||||||||||||||||||||||||| ||||||||| 
seq2  ATTTAT-ATAACTAAATACATTTCCTGTAGAGATGTGAGAAAATATGTCT  999

seq1  TTTGTCCCAAGTGACTTATTAATTGTGTCAGAATAACTCTATTTA-GAAA  1047
      ||||||||||||||| |||  |||||||||||   |||||||||| ||||
seq2  TTTGTCCCAAGTGAC-TAT--ATTGTGTCAGA--TACTCTATTTAGGAAA  1044

seq1  ATTCAGAACATGGGATTTTCAACCTGCTTTGCAAACTGTATCTAACTTGC  1097
      |||||| |||| |||||||| |||||| |||| |||||| ||| ||||||
seq2  ATTCAG-ACAT-GGATTTTC-ACCTGC-TTGC-AACTGT-TCT-ACTTGC  1087

seq1  ATTCCTTTAAAATGATTTGATTATTTATGAAATTAACCTGTAGAGTGCTA  1147
      | |||||| |||||  |||||||||||||||| || |  ||  ||  |||
seq2  A-TCCTTT-AAATGGATTGATTATTTATGAAAATACCTGGTGAAGATCTA  1135

seq1  CAAATATTTTATGTGTTAGAATAGTTACCATATATTTTCTCCCTATTTTT  1197
      |||| ||||  ||||   ||||   ||| ||| |||||     |   |||
seq2  CAAA-ATTTAGTGTG---GAAT--GTACAATAAATTTT-----TCGATTT  1174

seq1  CTGATTGAGTCAGCTCTACTTGCTACATGACCAGCTGCAGTCTTA  1242
      |||||   |  |||| |||||| | ||||||||||||||| ||||
seq2  CTGAT---GATAGCT-TACTTG-TCCATGACCAGCTGCAG-CTTA  1213

seq1: chr4_27890991_27892175
seq2: B6Ng01-003F23.g_65_1239 (reverse)

seq1  GAAATAAATGTGTTTTAATGTACTTTAGGTTTTGAAAGAGTGCATGCTAG  50
      |||||||||| |||   |||||| ||||| |||||||||| || ||||||
seq2  GAAATAAATG-GTT---ATGTAC-TTAGGGTTTGAAAGAG-GCCTGCTAG  44

seq1  ATAAAGTACAATCTG-AAAATGTAGAGCTTCTTATAGCAGTCGCCCATGT  99
      |||||||  | |||| |||||||||||||   ||||||||||||||||||
seq2  ATAAAGTCAATTCTGAAAAATGTAGAGCT--CTATAGCAGTCGCCCATGT  92

seq1  ATTGACTCCAT-CCCCAGTA-TTACTGTTACTGCTTGCCTACTCTTGTCA  147
      | ||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  A-TGACTCCATCCCCCAGTATTTACTGTTACTGCTTGCCTACTCTTGTCA  141

seq1  ACTTGTATTCTCTTGCCAATCAATAAATAAAGCATTATGGAAAAATTGGC  197
      ||| |||||||| ||||||||||||||||||||||||| |||||||||||
seq2  ACTGGTATTCTC-TGCCAATCAATAAATAAAGCATTAT-GAAAAATTGGC  189

seq1  TCCCGCCTTGATTATACTTCTTCATCTGTCTGGTATATAATTTCTTCTGG  247
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  TCCCGCC-TGATTATACTTC-TCATCTGTCTGGTATATAATTTCTTCTGG  237

seq1  TTTGTGATGCGTTGTTTTAAAGTATTGACCACAATCAAATATTGCAACCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATGCGTTGTTTTAAAGTATTGACCACAATCAAATATTGCAACCA  287

seq1  TGTGAAAACCATGAATTGTGAAATTAAGTTAGTAAATTTAGCTTACTGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAACCATGAATTGTGAAATTAAGTTAGTAAATTTAGCTTACTGGA  337

seq1  AATTTCATCAAGTGAATTTCTAAGCGTCAGGAGACATGTCAACATCAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATCAAGTGAATTTCTAAGCGTCAGGAGACATGTCAACATCAACT  387

seq1  GAATTTGCCATTTGGGAATTTTACTGTCCTTAACAAGTTATCTCAAATCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCCATTTGGGAATTTTACTGTCCTTAACAAGTTATCTCAAATCC  437

seq1  TAAACCAGTGCAGCACACTCAGGGCCATGGTCCAACTGTCTTTAAGTGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGTGCAGCACACTCAGGGCCATGGTCCAACTGTCTTTAAGTGCA  487

seq1  TTTTATTTTCAAAGGCTCATTTTTACATCCAGCATCAAATTTTAACTAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCAAAGGCTCATTTTTACATCCAGCATCAAATTTTAACTAAG  537

seq1  GCTCTGTGATAAAGAGTAAGAAAATCAGTCTTCAAGGAAATTGAAAGGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGATAAAGAGTAAGAAAATCAGTCTTCAAGGAAATTGAAAGGCA  587

seq1  AGAAAAATAAGTATATTTAAACTGTGTATCTTCTAACACCTTTTAGACAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAAGTATATTTAAACTGTGTATCTTCTAACACCTTTTAGACAA  637

seq1  CTTGCTATTTTTATATTATGTTTAGGAGCTGGAATAAAGCTAAATGTTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATTTTTATATTATGTTTAGGAGCTGGAATAAAGCTAAATGTTTG  687

seq1  TTCTGAAAGATGAGAGATCAAAAAGCAATTTCCTTTAAAAAGAAAATTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGATGAGAGATCAAAAAGCAATTTCCTTTAAAAAGAAAATTTT  737

seq1  GTAATAAAAACCACTTCATAGGAAAGAGACAATTGTCATATCTGGCTTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAAACCACTTCATAGGAAAGAGACAATTGTCATATCTGGCTTAT  787

seq1  TTTGACTCAGCAAATTCAGCTTGTTCTCACCTTCATAACACGAGTGTGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCAGCAAATTCAGCTTGTTCTCACCTTCATAACACGAGTGTGAT  837

seq1  GTTTTATTTATATAGTACAGTTTAAAAATGAAACTTAACGGAACATCTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTATATAGTACAGTTTAAAAATGAAACTTAACGGAACATCTAA  887

seq1  AATAAAGACAAAACTCTTCTTTGCATGTATTCTTTCAACATCGTCTTCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGACAAAACTCTTCTTTGCATGTATTCTTTCAACATCGTCTTCAT  937

seq1  ATTCCTTGATTGTTCAATTAATTATTCCATACACAGAAAATTTTAGTAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGATTGTTCAATTAATTATTCCATACACAGAAAATTTTAGTAAA  987

seq1  GGTAAGCTTACATTGTGAAAATTATTCTTTTCACTTCCTGTAACTATATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCTTACATTGTGAAAATTATTCTTTTCACTTCCTGTAACTATATT  1037

seq1  CCTTCCATCCACAGTTTAACACTCTCAAACGTTATTGGCAAGCAGTATTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATCCACAGTTTAACACTCTCAAACGTTATTGGCAAGCAGTATTT  1087

seq1  TTGATAAGAATTAGCACTACGTTGAGCCATCAGTCCTTAGCATATTTCAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAGAATTAGCACTACGTTGAGCCATCAGTCCTTAGCATATTTCAT  1137

seq1  TTTGGTACTGTTGTTTTCAAAATCAAGGGACTGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTACTGTTGTTTTCAAAATCAAGGGACTGAATTC  1175