BAC Information

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BAC

Clone NameB6Ng01-003K13
Chromosome4 (Build37)
Map Location 145,038,750 - 145,039,834
singlet/doubletsinglet
Overlap genenone
Upstream geneAadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282
Downstream gene9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003K13.bB6Ng01-003K13.g
ACCDH841299DH841300
length1,1661,071
definitionDH841299|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K13, 5' end.DH841300|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttctttaaacctttggtattaatatggaatttttttatgtaat
tccaaagcctttagtacacttcctatcaattaatggtcaatttctttatt
actctgtgccagagagcctggcaaatctgtatgggatcttatatgtgtta
tatgtagtcaattactcttatttgttgtagttaaataaatagtgaaatca
attcagaatcatcctaaataagatcaacaggctctatgtgtaaaacaaac
gtttctgtatattgagagtcagttactatgttaagacacttgaaaatctg
agaacaccatgactatattgcacataattaagatttttgaactgatttct
agggactgtcagccaccttacttaaatcttctgcctttcctgatttatta
gcctcagtataaaatgtagcagctccagatattggaattccctttagtgt
atgaggaaaaatccaagtagttcattttatgaactgaagtcacttgtttt
tagggtatctgttgttaataactccaagaaattactgcatgctttttacc
aacgttcatgttgtttccatagtgaggcaatctctgcatttataaatggt
accatgatttcagctggatccattccaattaatttttgaagtctcttttt
tttttatttttaataacaattcagagactatctccatgtaggcttttaat
ttcttaccctgtttatgtgctaaaaatatccattctaatatataatcttc
catctgcatgagcattcctgttggggaatgagtagaaggtaagataacta
agatgcaggccgttttggaacaatatgaactagttgtatgtcttgcaatt
aattaccttttctaccagagctaaaggccttctcagtcttggctggtaat
tttctcggcttatttatatctttttatcaccttgtaaggtttgaataaat
tgcttagcacttgattggccaagccattgtaggccacagccagttagtat
cctcccatattctgaaatcatagagtcctcaaatggtctttctgatgcac
ctttgtgacctgtgcgactatctagtatagaccatatagagccctcatga
attttttcaagggtgatgcacttcagcaacgcaggtatttcggggttggt
ttggtggatgttattc
gaattctctgatgagatctcaaattaaatttttgggtaaagcatttgtca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgaat
tctcagagtgccttttctagtaaagcatttgtcacattcactgcatttgt
aaggtttttctcctgtatgaattctctgatgccttctcagagtgcctttt
tcagtaaagcacttgtcacatccactgcatttgtaaggtttctctcctgc
atgaagtttctgatgattattaagatgagattttggggaaaagcatttgt
cacattcagtacatttgtgaggtgtataatggggggattctagaaacaca
ttgctaagcttgttacatttagaagacttctcttgaatattcatgtgttc
aagaacaatgtactggctgtcttgatccatgaccttcccatacattccat
atatgcaatgatttcctgaaaaaaaaaaaacgggtggggggcaattagag
gtgacatgatttacttatataaggagtaaggaattcaataatcagtgatc
tcatggattcgtactctcaaaagaggtttttctcctttttttttttaatc
attacatgtatcctcagaagaacctcaaatatgatttatatcaaatgact
ggaaatgataaaagcctgccaaattttatttccaaatttgacatcatact
cacctcaaatataatgacccagaattgctcctctcttaaagaaaaagagg
gacaaagaatggaaaagaggctgaaggtaaggacatccagagactggacc
aaagagatgcagaacctgtaccaaccatttgactgagcaaggggactaaa
atgaaagagttaaggtaaggactgaagaagccgaaggctttgcaacttgt
gtaggaggaacacatatcaaacacagacacacaaagctcccagggtcaaa
tcaccaaacaagagttcacatagagtacaaatgtctgcagctttatatat
agcagaggattgcttatatgcatcaacagagagagttccttgtatcatga
ggctcaatattcagcatagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145038750_145039834
seq2: B6Ng01-003K13.g_69_1139 (reverse)

seq1  TCCTATGCTGGGATATTGAGCCTTCATGGTACCAAGGGACTCTCCTCCTG  50
      ||||||||| | |||||||||| ||||| || ||||| ||||||   |||
seq2  TCCTATGCT-GAATATTGAGCC-TCATGATA-CAAGGAACTCTC--TCTG  45

seq1  TTGATGCCATATAAGGCAATCCTCTGCTATATATAAAGCTGCAGACATTT  100
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGATG-CATATAA-GCAATCCTCTGCTATATATAAAGCTGCAGACATTT  93

seq1  GTACTTCTATGTGAACTCTTTATTTGGTGATTTGACCCTTGGGAGCCTTG  150
      |||| ||||||||||||| || |||||||||||||||| ||||||| |||
seq2  GTAC-TCTATGTGAACTC-TTGTTTGGTGATTTGACCC-TGGGAGCTTTG  140

seq1  TGTGGTCTTGTTGTTTGATATTGTTGTTCCTCCTACAC-AGTTGCAAAGC  199
      ||| ||||   ||||||||||   |||||||||||||| |||||||||| 
seq2  TGT-GTCT--GTGTTTGATAT--GTGTTCCTCCTACACAAGTTGCAAAG-  184

seq1  CCTTCAGCTTCTTCAGTCCTTACCTTAACTCCTTCATTTTAGTCCCCTTG  249
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTTCGGCTTCTTCAGTCCTTACCTTAACTCTTTCATTTTAGTCCCCTTG  234

seq1  CTCAGTCCAATGGTTGGTACAGGTTCTGCATCTCTTTGGTCCAGTCTCTG  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAAATGGTTGGTACAGGTTCTGCATCTCTTTGGTCCAGTCTCTG  284

seq1  AATGGCCTTACCTTCAGCCTCTTTTCCATTCTTTGTCCCTCTTTTTCTTT  349
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCTTACCTTCAGCCTCTTTTCCATTCTTTGTCCCTCTTTTTCTTT  334

seq1  AAGAGAGGAGCAATTTTGGGTCATTATATTTGAGGTGGGTATGATGTCAA  399
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  AAGAGAGGAGCAATTCTGGGTCATTATATTTGAGGTGAGTATGATGTCAA  384

seq1  ATTTGAAAATAAAAGTTGGCAGGCTTTTATCATTTCCAGTCATTTGATAT  449
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAATAAAATTTGGCAGGCTTTTATCATTTCCAGTCATTTGATAT  434

seq1  AAATCATATTTGAGGTTCTTCTGAGGATACATGTAATGATT-CAAAAAAA  498
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  AAATCATATTTGAGGTTCTTCTGAGGATACATGTAATGATTAAAAAAAAA  484

seq1  AGGAAAAAAAACCTCTTTTGAGAGTACAAATCCATGAGATCACTGATTAT  548
      | | | ||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGGAGAAAAACCTCTTTTGAGAGTACGAATCCATGAGATCACTGATTAT  534

seq1  TGAATCCCTTACTCCTTATATAAGTAAATCATGTCACCTCTAATTGCCCC  598
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCTTACTCCTTATATAAGTAAATCATGTCACCTCTAATTGCCCC  584

seq1  CCACCCGTTTTTTTTTTTTCAGGAAATCATTGCATATATGGAATGTATGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCGTTTTTTTTTTTTCAGGAAATCATTGCATATATGGAATGTATGG  634

seq1  GAAGGTCATGGATCAAGACAGCCAGTACATTGTTCTTGAACACATGAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCATGGATCAAGACAGCCAGTACATTGTTCTTGAACACATGAATA  684

seq1  TTCAAGAGAAGTCTTCTAAATGTAACAAGCCTAGCAATGTGTTTCTAGAA  748
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCAAGAGAAGTCTTCTAAATGTAACAAGCTTAGCAATGTGTTTCTAGAA  734

seq1  TCCCCCCATTATACACCTCACAAATGTACTGAATGTGACAAATGCTTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCATTATACACCTCACAAATGTACTGAATGTGACAAATGCTTTTC  784

seq1  CCAAAAATCTCATCTTAATATTCATCAGAAAATTCATGCAGGAGAGAAAC  848
      || ||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  CCCAAAATCTCATCTTAATAATCATCAGAAACTTCATGCAGGAGAGAAAC  834

seq1  CTTACAAATGCAGTGGATGTGACAAATGCTTTACTGAAAAAGGCAGTCTG  898
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  CTTACAAATGCAGTGGATGTGACAAGTGCTTTACTGAAAAAGGCACTCTG  884

seq1  AGAAGGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGA  948
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAAGGCATCAGAGAATTCATACAGGAGAAAAACCTTACAAATGCAGTGA  934

seq1  ATGTGACAAATGCTTTACTAGAAAAGGCACTCTGAGAATTCATCAGAGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACAAATGCTTTACTAGAAAAGGCACTCTGAGAATTCATCAGAGAA  984

seq1  TTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTT  1034

seq1  ACCCAAAAATTTAATTTGAGATCTCATCAGAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAAATTTAATTTGAGATCTCATCAGAGAATTC  1071