BAC Information

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BAC

Clone NameB6Ng01-004A09
Chromosome4 (Build37)
Map Location 123,206,258 - 123,397,946
singlet/doubletdoublet
Overlap geneMacf1, LOC100039110, Ndufs5
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, D830031N03Rik
Downstream gene6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004A09.bB6Ng01-004A09.g
ACCDH841548DH841549
length1,228775
definitionDH841548|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A09, 5' end.DH841549|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,206,258 - 123,207,497)(123,397,184 - 123,397,946)
sequence
gaattcctccaccaggtttccagcacactgcctaacacatgcaatcgaag
gctctctgaatggagtgggagaaaagaggtatgcatgtttcttctctgtt
gtagcagtttatctttcatgttcctgcagtgccaggaatcaaatagaggg
ccttgtacatgctagaggcatatgcaccaccactaagccacatacacact
gtgtatgtatgtatgtacatgaatgtaatgggattttgctatgttgtcct
ggctatgtaagctcaaaaaacatataccagcacagccctatcacctttcc
tgaagagtcttcccagaaggaaagcaactagagaccctaaagccccggcc
ggccggctcttgtgtagctacagtgggtgcttcttcccttagtctggcac
taaagggccagcaaaactgcagcgccatcttatggacatcacagcacaca
gcaagtcagagcaagggaaactcagatcagttcaccagcaaaaaatcatg
acattacaaccaaattgttcgtgcggccaccaaaccttcacaaatacaat
gaagaaagcagaaataagggtactattaagcttcatgcagcaaggtacac
atttgacttccattaatgaaatataacctaataaaaaaaaatcccccaaa
tagatcaacctgggacaaaaagagatagctgcttaatagtagaactatta
ctgcagtgggtttctctaggaagcttatagaactaagcttattctatttt
tacttctgtgagtctactcttttctaaatgtctatatgtcagttgcgtca
ttttctactacagagaaaaactggtcaagacaggaacagaaatttgagaa
gggtggaactaggttcaaattgctaagtggcttaactaatttactgagtg
attcagatttcttacctataagatatggacactaccacccacataatggg
gttgaaagacaggctaatgatataatgtctgtaagcacttggctcagtgc
ctgatctatagtaaatctcttttattcccatttatgcctggggctaacat
taaggagcatccctagcttcccacaagggaacctcagtacacttttcctg
gatgatctaagggaaagtaaattaaacccagaattcttcttaacgggaag
tgcttccactcttctgattactgacctaggacataacggtcatgacctcc
acctggctagcctatggaacaatatggc
gaattcccaaagtctgggcaccatagcaacaactcctgccgttgctgctg
agtctgggaattgtagttttccaggatttgcttgagaggaaaagctgttg
ttgcctgtgaggaccctgttgtctgacatatccagttgtgggtacctgtt
cacgttcagatctacgatggatataaggctgtcagggcctgagatagggc
ttagaaatgtctggagggctgggcatggtggtgcacacctttaatcccag
cacttgggaggcaaaggcaggtgaatgtctgagttcgaggccagcctggt
ctacagagtaagttccaggacagccagggctacacagagaaaccctgtct
cggaaaaagaaagaaagaaagaaagaaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaga
aagaaaaaaagaaagaaaagaaagaaaaagaaaaaaagaaaaaaggaaag
gaaaggaaaggaaagaaatgtccaaaggattggaatttccatcagaagct
agcaaaacagacagggtatgaatggatttgaggaggggagatagtggtag
catgtcaggcaaaataaggtgaaacttaagatcaagagaaagttctggga
tgggagagatggctcattgttcaagaactcttgagtgctctgcttgaagg
tcctgagtccaattcccagctaacccatttgggtggctcacaacctatcc
gttatgaaaatctgacttgctctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_123206258_123207497
seq2: B6Ng01-004A09.b_45_1272

seq1  GAATTCCTCCACCAGGTTTCCAGCACACTGCCTAACACATGCAATCGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCACCAGGTTTCCAGCACACTGCCTAACACATGCAATCGAAG  50

seq1  GCTCTCTGAATGGAGTGGGAGAAAAGAGGTATGCATGTTTCTTCTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGAATGGAGTGGGAGAAAAGAGGTATGCATGTTTCTTCTCTGTT  100

seq1  GTAGCAGTTTATCTTTCATGTTCCTGCAGTGCCAGGAATCAAATAGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGTTTATCTTTCATGTTCCTGCAGTGCCAGGAATCAAATAGAGGG  150

seq1  CCTTGTACATGCTAGAGGCATATGCACCACCACTAAGCCACATACACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACATGCTAGAGGCATATGCACCACCACTAAGCCACATACACACT  200

seq1  GTGTATGTATGTATGTACATGAATGTAATGGGATTTTGCTATGTTGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTATGTATGTACATGAATGTAATGGGATTTTGCTATGTTGTCCT  250

seq1  GGCTATGTAAGCTCAAAAAACATATACCAGCACAGCCCTATCACCTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGTAAGCTCAAAAAACATATACCAGCACAGCCCTATCACCTTTCC  300

seq1  TGAAGAGTCTTCCCAGAAGGAAAGCAACTAGAGACCCTAAAGCCCCGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTCTTCCCAGAAGGAAAGCAACTAGAGACCCTAAAGCCCCGGCC  350

seq1  GGCCGGCTCTTGTGTAGCTACAGTGGGTGCTTCTTCCCTTAGTCTGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGCTCTTGTGTAGCTACAGTGGGTGCTTCTTCCCTTAGTCTGGCAC  400

seq1  TAAAGGGCCAGCAAAACTGCAGCGCCATCTTATGGACATCACAGCACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGCCAGCAAAACTGCAGCGCCATCTTATGGACATCACAGCACACA  450

seq1  GCAAGTCAGAGCAAGGGAAACTCAGATCAGTTCACCAGCAAAAAATCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCAGAGCAAGGGAAACTCAGATCAGTTCACCAGCAAAAAATCATG  500

seq1  ACATTACAACCAAATTGTTCGTGCGGCCACCAAACCTTCACAAATACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACAACCAAATTGTTCGTGCGGCCACCAAACCTTCACAAATACAAT  550

seq1  GAAGAAAGCAGAAATAAGGGTACTATTAAGCTTCATGCAGCAAGGTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGCAGAAATAAGGGTACTATTAAGCTTCATGCAGCAAGGTACAC  600

seq1  ATTTGACTTCCATTAATGAAATATAACCTAATAAAAAAAAATCCCCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTTCCATTAATGAAATATAACCTAATAAAAAAAAATCCCCCAAA  650

seq1  TAGATCAACCTGGGACAAAAAGAGATAGCTGCTTAATAGTAGAACTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAACCTGGGACAAAAAGAGATAGCTGCTTAATAGTAGAACTATTA  700

seq1  CTGCAGTGGGTTTCTCTAGGAAGCTTATAGAACTAAGCTTATTCTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGGGTTTCTCTAGGAAGCTTATAGAACTAAGCTTATTCTATTTT  750

seq1  TACTTCTGTGAGTCTACTCTTTTCTAAATGTCTATATGTCAGTTGCGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGTGAGTCTACTCTTTTCTAAATGTCTATATGTCAGTTGCGTCA  800

seq1  TTTTCTACTACAGAGAAAAACTGGTCAAGACAGGAACAGAAATTTGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTACAGAGAAAAACTGGTCAAGACAGGAACAGAAATTTGAGAA  850

seq1  GGGTGGAACTAGGTTCAAATTGCTAAGTGGCTTAACTAATTTACTGAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAACTAGGTTCAAATTGCTAAGTGGCTTAACTAATTTACTGAGTG  900

seq1  ATTCAGATTTCTTACCTATAAGATATGGACACTACCACCCACATAATGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATTTCTTACCTATAAGATATGGACACTACCACCCACATAATGGG  950

seq1  GTTGAAAGACAAGGCTAATGATATAATGTCTGTAAAGCACTTGGCTCAGT  1000
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  GTTGAAAGAC-AGGCTAATGATATAATGTCTGT-AAGCACTTGGCTCAGT  998

seq1  GCCTGATCTATAGTAAATCTCTTTTATTCCCATTTATGCCTGGGGCTAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCTGATCTATAGTAAATCTCTTTTATTCCCATTTATGCCTGGGGCT-AA  1047

seq1  CATT-AGGAGCCATCCCTAGC-TCCCACA--GGGATCTCAGTACACCTCT  1096
      |||| ||||| |||||||||| |||||||  || | |||||||||   ||
seq2  CATTAAGGAG-CATCCCTAGCTTCCCACAAGGGAACCTCAGTACA---CT  1093

seq1  TTTCCTTGATTGTATTCTAA-GGAAAGTAAATAAACCCCAAGATTTTCTT  1145
      |||||| ||   |  ||||| ||||||||||| || ||||  |  |||||
seq2  TTTCCTGGA---TGATCTAAGGGAAAGTAAATTAAACCCAGAA--TTCTT  1138

seq1  CTTAGACAGGGA-TGCTTCCACTCTTTCTGAGTTAACTGACTACAGGAC-  1193
      |||| || || | ||||||||||| ||||||  | ||||||   ||||| 
seq2  CTTA-ACGGGAAGTGCTTCCACTC-TTCTGA--TTACTGAC-CTAGGACA  1183

seq1  TAACGTGTGCATGGACCCTCACCTGGCATAGCCTAT-GAAC-ATATGGC  1240
      ||||| || ||| ||||  |||||||| |||||||| |||| |||||||
seq2  TAACG-GT-CAT-GACCTCCACCTGGC-TAGCCTATGGAACAATATGGC  1228

seq1: chr4_123397184_123397946
seq2: B6Ng01-004A09.g_66_840 (reverse)

seq1  TAAGAGCCCGTCAGA-TCTCATTACGGAT-GGTTGTGAGCCA-CCATATG  47
      |||||||  |||||| | |||| |||||| |||||||||||| ||| |||
seq2  TAAGAGCAAGTCAGATTTTCATAACGGATAGGTTGTGAGCCACCCAAATG  50

seq1  G--TTGCTGGGATTTGAACTCAGGACCTTC-AGCAGAGCACTC-AGTGTT  93
      |  | ||||||| ||| ||||||||||||| |||||||||||| || |||
seq2  GGTTAGCTGGGAATTGGACTCAGGACCTTCAAGCAGAGCACTCAAGAGTT  100

seq1  CTTGACCACTGAGCCATCTCT-CCATCCCAGAACTTTCTCTTGATCTTAA  142
      ||||| || |||||||||||| ||||||||||||||||||||||||||||
seq2  CTTGAACAATGAGCCATCTCTCCCATCCCAGAACTTTCTCTTGATCTTAA  150

seq1  GTTTCACCTTCTTTTGCCTGACATGCTACCACTATCTCCCCTCCTCAAAT  192
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACCTTATTTTGCCTGACATGCTACCACTATCTCCCCTCCTCAAAT  200

seq1  CCATTCATACCCTGTCTGTTTTGCTAGCTTCTGATGGAAATTCCAATCCT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATACCCTGTCTGTTTTGCTAGCTTCTGATGGAAATTCCAATCCT  250

seq1  TTGGACATTTCTTTCCTTTCCTTTCCTTTCCTTTTTTCTTTTTTTCTTTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATTTCTTTCCTTTCCTTTCCTTTCCTTTTTTCTTTTTTTCTTTT  300

seq1  TCTTTCTTTTCTTTCTTTTTTTCTTTCT----TTTCTTTCTTTCTTTCTT  338
      ||||||||||||||||||||||||||||    ||||||||||||||||||
seq2  TCTTTCTTTTCTTTCTTTTTTTCTTTCTTTTCTTTCTTTCTTTCTTTCTT  350

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTT  400

seq1  CTTTCTTTCTTTCTTTCTTTTTCCGAGACAGGGTTTCTCTGTGTAGCCCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTTTCCGAGACAGGGTTTCTCTGTGTAGCCCT  450

seq1  GGCTGTCCTGGAACTTACTCTGTAGACCAGGCTGGCCTCGAACTCAGACA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTTACTCTGTAGACCAGGCTGGCCTCGAACTCAGACA  500

seq1  TTCACCTGCCTTTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGCCTTTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCA  550

seq1  TGCCCAGCCCTCCAGACATTTCTAAGCCCTATCTCAGGCCCTGACAGCCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCCCTCCAGACATTTCTAAGCCCTATCTCAGGCCCTGACAGCCT  600

seq1  TATATCCATCGTAGATCTGAACGTGAACAGGTACCCACAACTGGATATGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCATCGTAGATCTGAACGTGAACAGGTACCCACAACTGGATATGT  650

seq1  CAGACAACAGGGTCCTCACAGGCAACAACAGCTTTTCCTCTCAAGCAAAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAACAGGGTCCTCACAGGCAACAACAGCTTTTCCTCTCAAGCAAAT  700

seq1  CCTGGAAAACTACAATTCCCAGACTCAGCAGCAACGGCAGGAGTTGTTGC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAACTACAATTCCCAGACTCAGCAGCAACGGCAGGAGTTGTTGC  750

seq1  TATGGTGCCCAGACTTTGGGAATTC  763
      |||||||||||||||||||||||||
seq2  TATGGTGCCCAGACTTTGGGAATTC  775