BAC Information

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BAC

Clone NameB6Ng01-004B19
Chromosome4 (Build37)
Map Location 133,005,841 - 133,035,846
singlet/doubletdoublet
Overlap genenone
Upstream geneMed18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1
Downstream gene4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004B19.bB6Ng01-004B19.g
ACCDH841611DH841612
length1,184819
definitionDH841611|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B19, 5' end.DH841612|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,034,660 - 133,035,846)(133,005,841 - 133,006,657)
sequence
gaattccctcctttggtctttaaagaagctgctgcttgcgattggcccga
gcctgccgggacttagagggacagcgccctccagcggcagaagtcgaggg
aggtctgtgtagagtaatgttgccgtgttgacaaggcggcccggccgctt
tctaatttattcctttgattggcccttcgaattaccgcatgcctggcgta
cctgttccatcttaggtgaggtgaaatctgcttagagagagggcgttatt
acccatcatcatgtagcatgtgagtgtcagttatggtcctgatggaggtt
taaagatctatgtagctctttgctccatctgggcccacccagggtttttc
tgggatggatattactattttttttctctttctctctacagatcatagag
gccgaggcttattgctacttttgaatcttatcccctcctccttttcagat
tttaaatatatgtgtcatgggcaggagggagaatcgaaatcgaatcgccc
tgttcatcgccgcagtatttttttcttgtcattctcgtaataataatata
gcaaattctgtagccttccattttcctaaaaggcagactaaggattaaaa
gacagggaagaagaatccaggacttagaaacagctactataccccagttt
ctgtcagggcacagcttgacctgcctcaaaccagaacacacatttcttct
ttctgaaagccggccccagcctcaggccactctaaaaacccctggaggag
gccccgtgtgttccaccagatgtgtaaccccagcattccagtggtgtggg
caggaggataagacgtttcagttatccttgtctgcctgttgagttctggg
tcagccggggatatacagtgagaccctgtcaacaacaacatcaacaggct
ggagatataagcgctgaccaattgctcgcctagtgtgccggagacccagg
cttcaacctctggtgcacaaaacgagggaaataaaaatgagatcttgact
gagttgtctctgaactctagatcccgaggctactgatgaaagcgtttgag
ttcaaggcataatacttttctgcacatggattggctcagtggcctcggaa
tgctgcttaggtgcagattcttgggtcttattctccaagtctcctaacaa
cacaggccaccacaaagtctcagcatagtccctg
gaattccaaccgcaacagccgagcatctgtcagagcgccacctgctggct
gatactgactgtggccagaattgaaagtttgttgcctgaatggggaaggg
gactcccttcaaatgacctgtcccactaaaaaataactagtgcttgattc
atcctgaccctcctgagggtcagccaacataaacaacaaacgaaagaagg
gggtgttgtggtgtgtgcctataatcccaacccttgggaggtaaaatcag
gagggatcatgatttcaaggccagcctaggctacatagtgaggctattcc
taaagcaaaaataaaacagtcatacgccttgcaacaggcaaaaaggtctc
ccggtgcctgttctcctggagaaaggttgaacattagtgaccttcaatgc
ttcattctctagaggagggggtgtgctctgggttggctgactctataact
gtgtagggataaaaccaacttatggaaaacctatggtggatagagagggt
ggatgggttagctgttaagagcactggatagtcctggagaggaccagaaa
ttgtttcccagcacttatgggcagctcccactacctgtagctccacttcc
agggaatctgctgcctgcccccttctggtctccactggcacgtcatacat
tcctacacataacacacacacacacacacacacacacacacacaggaata
accttttttttttttaaatcgtaatgtgccaggagatggttgcacacacc
tttaatcccagcacttgggaggcagaggcagacagatttctgagttcgaa
gtcagcctggtcttcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133034660_133035846
seq2: B6Ng01-004B19.b_41_1224 (reverse)

seq1  CAGGGGCTATGCTGTGGCTTTGTGGTGGCTTGTGTTGGTTTGGGGGCTTG  50
      ||||| |||||||| | |||||||||||| |||||| ||| || | ||||
seq2  CAGGGACTATGCTGAGACTTTGTGGTGGCCTGTGTT-GTTAGGAGACTTG  49

seq1  G-GGATTAGACCCAGGATCTTGCA-CTAGGCAAGCATTCCGA-GCCACTG  97
      | | || ||||||| ||   |||| ||| || |||||||||| |||||||
seq2  GAGAATAAGACCCAAGAATCTGCACCTAAGC-AGCATTCCGAGGCCACTG  98

seq1  AGCCAAATCCATGTGCAGGAGAGTATTATGCCTGGACCTCAAACGCTTTC  147
      |||| ||||||||||||| | |||||||||||| || |||||||||||||
seq2  AGCC-AATCCATGTGCAGAAAAGTATTATGCCTTGAACTCAAACGCTTTC  147

seq1  ATCAGTAGCCTCGGGGATCTAGAGTTCAGAGACAACTCAGTCAAAGATCT  197
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  ATCAGTAGCCTC-GGGATCTAGAGTTCAGAGACAACTCAGTC-AAGATCT  195

seq1  CATTTTTATTTCCCTCGTTTTGTGGCACCAGAGGTTGAAGCCTGGGTCTC  247
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATTTTTATTTCCCTCGTTTTGT-GCACCAGAGGTTGAAGCCTGGGTCTC  244

seq1  CGGCACACTAGGCGAGCAATTGGTCAGCGCTTTATATCTCCAGCCTGTTG  297
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CGGCACACTAGGCGAGCAATTGGTCAGCGC-TTATATCTCCAGCCTGTTG  293

seq1  ATGTTGTTGTTGACAGGGTCTCACTGTATATCCCCGGCTGACCCAGAACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTGTTGACAGGGTCTCACTGTATATCCCCGGCTGACCCAGAACT  343

seq1  CAACAGGCAGACAAGGATAACTG-AACGTCTTATCCTCCTGCCCACACCA  396
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAACAGGCAGACAAGGATAACTGAAACGTCTTATCCTCCTGCCCACACCA  393

seq1  CTGGAATGCTGGGGTTACACATCTGGTGGAACACACGGGGCCTCCTCCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGCTGGGGTTACACATCTGGTGGAACACACGGGGCCTCCTCCAG  443

seq1  GGGTTTTTAGAGTGGCCTGAGGCTGGGGCCGGCTTTCAGAAAGAAGAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTAGAGTGGCCTGAGGCTGGGGCCGGCTTTCAGAAAGAAGAAAT  493

seq1  GTGTGTTCTGGTTTGAGGCAGGTCAAGCTGTGCCCTGACAGAAACTGGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTCTGGTTTGAGGCAGGTCAAGCTGTGCCCTGACAGAAACTGGGG  543

seq1  TATAGTAGCTGTTTCTAAGTCCTGGATTCTTCTTCCCTGTCTTTTAATCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAGCTGTTTCTAAGTCCTGGATTCTTCTTCCCTGTCTTTTAATCC  593

seq1  TTAGTCTGCCTTTTAGGAAAATGGAAGGCTACAGAATTTGCTATATTATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTGCCTTTTAGGAAAATGGAAGGCTACAGAATTTGCTATATTATT  643

seq1  ATTACGAGAATGACAAGAAAAAAATACTGCGGCGATGAACAGGGCGATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGAGAATGACAAGAAAAAAATACTGCGGCGATGAACAGGGCGATTC  693

seq1  GATTTCGATTCTCCCTCCTGCCCATGACACATATATTTAAAATCTGAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCGATTCTCCCTCCTGCCCATGACACATATATTTAAAATCTGAAAA  743

seq1  GGAGGAGGGGATAAGATTCAAAAGTAGCAATAAGCCTCGGCCTCTATGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGGGATAAGATTCAAAAGTAGCAATAAGCCTCGGCCTCTATGAT  793

seq1  CTGTAGAGAGAAAGAGAAAAAAAATAGTAATATCCATCCCAGAAAAACCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGAGAAAGAGAAAAAAAATAGTAATATCCATCCCAGAAAAACCC  843

seq1  TGGGTGGGCCCAGATGGAGCAAAGAGCTACATAGATCTTTAAACCTCCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGCCCAGATGGAGCAAAGAGCTACATAGATCTTTAAACCTCCAT  893

seq1  CAGGACCATAACTGACACTCACATGCTACATGATGATGGGTAATAACGCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCATAACTGACACTCACATGCTACATGATGATGGGTAATAACGCC  943

seq1  CTCTCTCTAAGCAGATTTCACCTCACCTAAGATGGAACAGGTACGCCAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTAAGCAGATTTCACCTCACCTAAGATGGAACAGGTACGCCAGG  993

seq1  CATGCGGTAATTCGAAGGGCCAATCAAAGGAATAAATTAGAAAGCGGCCG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGGTAATTCGAAGGGCCAATCAAAGGAATAAATTAGAAAGCGGCCG  1043

seq1  GGCCGCCTTGTCAACACGGCAACATTACTCTACACAGACCTCCCTCGACT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCCTTGTCAACACGGCAACATTACTCTACACAGACCTCCCTCGACT  1093

seq1  TCTGCCGCTGGAGGGCGCTGTCCCTCTAAGTCCCGGCAGGCTCGGGCCAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCGCTGGAGGGCGCTGTCCCTCTAAGTCCCGGCAGGCTCGGGCCAA  1143

seq1  TCGCAAGCAGCAGCTTCTTTAAAGACCAAAGGAGGGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAAGCAGCAGCTTCTTTAAAGACCAAAGGAGGGAATTC  1184

seq1: chr4_133005841_133006657
seq2: B6Ng01-004B19.g_66_883

seq1  GAATTCCAACCGCAACAGCCGAGCATCTGTCAGAGCGCCACCTGCTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCGCAACAGCCGAGCATCTGTCAGAGCGCCACCTGCTGGCT  50

seq1  GATACTGACTGTGGCCAGAATTGAAAGTTTGTTGCCTGAATGGGGAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGACTGTGGCCAGAATTGAAAGTTTGTTGCCTGAATGGGGAAGGG  100

seq1  GACTCCCTTCAAATGACCTGTCCCACTAAAAAATAACTAGTGCTTGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTTCAAATGACCTGTCCCACTAAAAAATAACTAGTGCTTGATTC  150

seq1  ATCCTGACCCTCCTGAGGGTCAGCCAACATAAACAACAAACGAAAGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACCCTCCTGAGGGTCAGCCAACATAAACAACAAACGAAAGAAGG  200

seq1  GGGTGTTGTGGTGTGTGCCTATAATCCCAACCCTTGGGAGGTAAAATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGTGGTGTGTGCCTATAATCCCAACCCTTGGGAGGTAAAATCAG  250

seq1  GAGGGATCATGATTTCAAGGCCAGCCTAGGCTACATAGTGAGGCTATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATCATGATTTCAAGGCCAGCCTAGGCTACATAGTGAGGCTATTCC  300

seq1  TAAAGCAAAAATAAAACAGTCATACGCCTTGCAACAGGCAAAAAGGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAAAAATAAAACAGTCATACGCCTTGCAACAGGCAAAAAGGTCTC  350

seq1  CCGGTGCCTGTTCTCCTGGAGAAAGGTTGAACATTAGTGACCTTCAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGCCTGTTCTCCTGGAGAAAGGTTGAACATTAGTGACCTTCAATGC  400

seq1  TTCATTCTCTAGAGGAGGGGGTGTGCTCTGGGTTGGCTGACTCTATAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTCTAGAGGAGGGGGTGTGCTCTGGGTTGGCTGACTCTATAACT  450

seq1  GTGTAGGGATAAAACCAACTTATGGAAAACCTATGGTGGATAGAGAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGGATAAAACCAACTTATGGAAAACCTATGGTGGATAGAGAGGGT  500

seq1  GGATGGGTTAGCTGTTAAGAGCACTGGATAGTCCTGGAGAGGACCAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGTTAGCTGTTAAGAGCACTGGATAGTCCTGGAGAGGACCAGAAA  550

seq1  TTGTTTCCCAGCACTTATGGGCAGCTCCCACTACCTGTAGCTCCACTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCCAGCACTTATGGGCAGCTCCCACTACCTGTAGCTCCACTTCC  600

seq1  AGGGAATCTGCTGCCTGCCCCCTTCTGGTCTCCACTGGCACGTCATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCTGCTGCCTGCCCCCTTCTGGTCTCCACTGGCACGTCATACAT  650

seq1  TCCTACACATAACACACACACACACACACACACACACACACACA-GAAAA  699
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  TCCTACACATAACACACACACACACACACACACACACACACACAGGAATA  700

seq1  ACCTTTTTTTTTTTTAAATCGTAATGTGCCAGGAGATGGTTGCACACACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTTTTTTTTAAATCGTAATGTGCCAGGAGATGGTTGCACACACC  750

seq1  TTTAATCCCAGCACTTGGGAGGCAGAGGCAGACAGATCTCTGAGTTCGAA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTAATCCCAGCACTTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCGAA  800

seq1  GCCAGCCTGGTCTACAGA  817
      | ||||||||||| ||||
seq2  GTCAGCCTGGTCTTCAGA  818