BAC Information

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BAC

Clone NameB6Ng01-004D17
Chromosome4 (Build37)
Map Location 53,305,799 - 53,406,826
singlet/doubletdoublet
Overlap geneLOC100041197
Upstream geneLOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809
Downstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004D17.bB6Ng01-004D17.g
ACCDH841703DH841704
length1,1851,030
definitionDH841703|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D17, 5' end.DH841704|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,405,611 - 53,406,826)(53,305,799 - 53,306,848)
sequence
gaattctctttaaatcaacttcactgactggctgtgttagcattttgaga
atactctgtgtgtactctgtgtgttcttggattaccataggttgtcagag
atgtttgacctattcagaagcgttgtggcatgacagagtgaggaatatag
gcatacctgagaaaataaaaatagaagcaaagacaaactttgagtgatgc
caaaagattaggatgcaaacttctgaggtcccacgtatttgctgaggcga
accactgattctccagcgaactctcccagacatccagaggcctctttcac
agtgctcagtagctcaaatccagttcccacagctgaaaatggagagaaac
ttcttgctgtatgattcccaagaaaactcttcatgacaacttttgatgtg
tctataaaaagctctcaaacaacactttgatagactcttaaaaaacaatt
tctctccttgtgggctaatgtcaaaacaccagataccactagcaaaagcc
aaatcaatttttttctgatggtttgatttgattcaaagataacattttga
cagctcagagcaatgggtgagctgcacatcctttaagaaaggctgcttca
caaatattagttcctgcaactgcaacttgataaagattggccactcagaa
gtttatattgccatctagacagaaaatagccctatgctttgacaatccac
ttgtcagagagggctgaaatatttgtttgcaataagagagcaaggattta
aagtataaatattctcaaaagtgggttcagaaaagcaaaagcataagatc
gctacagatttgtgacatgtaagggcagcgcagtctttgaaagagcgtcg
cctagaggacaggtgcccgcccggctggggaggcggcctaagccacagca
gcagcggtcgccattttggtccgggacccgccgaacttaggaaattagtc
tgaacagtgagagggtgcgccagagaacctgacagcttctggaacagcag
aagcacagaagcgcttgagcagcaccctgtgtggcggacagccgccactt
cgaccggaagacagtgccaccgctgggaggcgctagcacagcagcagcgt
cgcatctcgttcgggactcaggacttaagaattagttgctaagttgaagt
ctaaaccaccttgactactaagcaacacacctgtc
gaattcaaagggctggggtcatgggatgttgattcataggataatcaaaa
ggaaaacctagagtaaatgactggactgatatgttatgatatgatatgac
tggatctgtgttttgcagatgagctatacagaggattttttaggataaaa
agagagaactgcttggagaactctctctctctctctctctctctctctct
ctctctcacacacacacacacacacacacacacacacacacacacacaca
cacataccccaagcaagcaatacatggacagagatctcttagaatagcga
gcaagcagaataaagacagaagaacatagagaaaaacagactggaaaagt
tggatcaagccgaacacaggtcatcagcctggatccacaatttcacttca
cgtccttcttttctctgctctcagaacccctttccacgtcgagactggtc
cttggcagtgagtaaggctagagtgtgacaagtaagagaatatacacttg
gtgggatgagctgataagaatgggcaggcagtctttgctttctcctgctt
ggatggtgcactggctagttttgtgtcaacttgacacagctggagttatc
acagaaaaaggagcttcagttggggaaatgcctccatgagatccaactgt
aaaacattttcccaattagtgatcaagggggagaggccccttgtgggtgg
gaccatctctgggctggtagtcttgattctataagagagcagctaagcaa
gccaggggaggcaagtcagtaaagacatccctccatggcctctgcatcag
ctcctgctccctgactgttgagttccagtcctgacttccttggtgataac
agaaacatggaagtgtaagctgaataaatcctttctttcccaacttgctt
cttggtcatgatgttgtgcaggatagatccttgactaagacagattgttt
tgtatttggtgtgatacacaaacatagatagcagcactcacacgttttct
catgtggtctatgaggagatatgaaaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_53405611_53406826
seq2: B6Ng01-004D17.b_49_1233 (reverse)

seq1  GACA-GTGTGTTGCTTTGGCAGTTCCCAGGTGGTATAGACTCTCACCTAA  49
      |||| ||||||||| || | |||  | ||||||| |||||| ||| || |
seq2  GACAGGTGTGTTGC-TTAGTAGT--CAAGGTGGTTTAGACT-TCAACTTA  46

seq1  GCAGACTAAATTCCTAAGTTCCTTGGAGTCCCGGGACCGAGATGGCGACC  99
      ||| ||| ||||| |||| ||||  |||||||  || |||||| |||| |
seq2  GCA-ACT-AATTCTTAAG-TCCT--GAGTCCC--GAACGAGAT-GCGA-C  87

seq1  GCTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCCGGGTGGGCACCTGTCCT  149
      ||||||||||||   |||  ||||| ||||||  ||| |||| ||||| |
seq2  GCTGCTGCTGTG--CTAG--CGCCT-CCCAGC--GGT-GGCA-CTGTCTT  128

seq1  CCGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACACAGGGTGCTGCCTC  199
      ||||||  ||| |||| |||||||||     ||||||||||||||||   
seq2  CCGGTC--GAA-GTGG-CGGCTGTCC----GCCACACAGGGTGCTGCTCA  170

seq1  AGCGCCTCTGTGCTTCTGCCTGTTCCAGAAGCTGTCAGGTTCTCTGGCGC  249
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCGCTTCTGTGCTTCTG-CTGTTCCAGAAGCTGTCAGGTTCTCTGGCGC  219

seq1  ACCCTCTCACCTGTTCAGACTAATTTCCTAAGTTCGGCGGGTCCCGGACC  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCA-CTGTTCAGACTAATTTCCTAAGTTCGGCGGGTCCCGGACC  268

seq1  AAGATGGCGACCGCTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCCGGGCG  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCGACCGCTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCCGGGCG  318

seq1  GGCACCTGTCCTCTAGGCGACGCTCTTTCAAAGACTGCGCTGCCCTTACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTGTCCTCTAGGCGACGCTCTTTCAAAGACTGCGCTGCCCTTACA  368

seq1  TGTCACAAATCTGTAGCGATCTTATGCTTTTGCTTTTCTGAACCCACTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAAATCTGTAGCGATCTTATGCTTTTGCTTTTCTGAACCCACTTT  418

seq1  TGAGAATATTTATACTTTAAATCCTTGCTCTCTTATTGCAAACAAATATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATATTTATACTTTAAATCCTTGCTCTCTTATTGCAAACAAATATT  468

seq1  TCAGCCCTCTCTGACAAGTGGATTGTCAAAGCATAGGGCTATTTTCTGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTCTCTGACAAGTGGATTGTCAAAGCATAGGGCTATTTTCTGTC  518

seq1  TAGATGGCAATATAAACTTCTGAGTGGCCAATCTTTATCAAGTTGCAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGCAATATAAACTTCTGAGTGGCCAATCTTTATCAAGTTGCAGTT  568

seq1  GCAGGAACTAATATTTGTGAAGCAGCCTTTCTTAAAGGATGTGCAGCTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACTAATATTTGTGAAGCAGCCTTTCTTAAAGGATGTGCAGCTCA  618

seq1  CCCATTGCTCTGAGCTGTCAAAATGTTATCTTTGAATCAAATCAAACCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGCTCTGAGCTGTCAAAATGTTATCTTTGAATCAAATCAAACCAT  668

seq1  CAGAAAAAAATTGATTTGGCTTTTGCTAGTGGTATCTGGTGTTTTGACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAATTGATTTGGCTTTTGCTAGTGGTATCTGGTGTTTTGACAT  718

seq1  TAGCCCACAAGGAGAGAAATTGTTTTTTAAGAGTCTATCAAAGTGTTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCACAAGGAGAGAAATTGTTTTTTAAGAGTCTATCAAAGTGTTGTT  768

seq1  TGAGAGCTTTTTATAGACACATCAAAAGTTGTCATGAAGAGTTTTCTTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCTTTTTATAGACACATCAAAAGTTGTCATGAAGAGTTTTCTTGG  818

seq1  GAATCATACAGCAAGAAGTTTCTCTCCATTTTCAGCTGTGGGAACTGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATACAGCAAGAAGTTTCTCTCCATTTTCAGCTGTGGGAACTGGAT  868

seq1  TTGAGCTACTGAGCACTGTGAAAGAGGCCTCTGGATGTCTGGGAGAGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTACTGAGCACTGTGAAAGAGGCCTCTGGATGTCTGGGAGAGTTC  918

seq1  GCTGGAGAATCAGTGGTTCGCCTCAGCAAATACGTGGGACCTCAGAAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAATCAGTGGTTCGCCTCAGCAAATACGTGGGACCTCAGAAGTT  968

seq1  TGCATCCTAATCTTTTGGCATCACTCAAAGTTTGTCTTTGCTTCTATTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTAATCTTTTGGCATCACTCAAAGTTTGTCTTTGCTTCTATTTT  1018

seq1  TATTTTCTCAGGTATGCCTATATTCCTCACTCTGTCATGCCACAACGCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCAGGTATGCCTATATTCCTCACTCTGTCATGCCACAACGCTT  1068

seq1  CTGAATAGGTCAAACATCTCTGACAACCTATGGTAATCCAAGAACACACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGGTCAAACATCTCTGACAACCTATGGTAATCCAAGAACACACA  1118

seq1  GAGTACACACAGAGTATTCTCAAAATGCTAACACAGCCAGTCAGTGAAGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACACAGAGTATTCTCAAAATGCTAACACAGCCAGTCAGTGAAGT  1168

seq1  TGATTTAAAGAGAATTC  1216
      |||||||||||||||||
seq2  TGATTTAAAGAGAATTC  1185

seq1: chr4_53305799_53306848
seq2: B6Ng01-004D17.g_67_1096

seq1  GAATTCAAAGGGCTGGGGTCATGGGATGTTGATTCATAGGATAATCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGGCTGGGGTCATGGGATGTTGATTCATAGGATAATCAAAA  50

seq1  GGAAAACCTAGAGTAAATGACTGGACTGATATGTTATGATATGATATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCTAGAGTAAATGACTGGACTGATATGTTATGATATGATATGAC  100

seq1  TGGATCTGTGTTTTGCAGATGAGCTATACAGAGGATTTTTTAGGATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGTGTTTTGCAGATGAGCTATACAGAGGATTTTTTAGGATAAAA  150

seq1  AGAGAGAACTGCTTGGAGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  AGAGAGAACTGCTTGGAGAA--CTCTCTCTCTCTCTCTCTCTCTCTCTCT  198

seq1  CTCTCTCTCACACACACACACACACACACACACACACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCACACACACACACACACACACACACACACACACACACACACA  248

seq1  CACACATACCCCAAGCAAGCAATACATGGACAGAGATCTCTTAGAATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACCCCAAGCAAGCAATACATGGACAGAGATCTCTTAGAATAGC  298

seq1  GAGCAAGCAGAATAAAGACAGAAGAACATAGAGAAAAACAGACTGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCAGAATAAAGACAGAAGAACATAGAGAAAAACAGACTGGAAAA  348

seq1  GTTGGATCAAGCCGAACACAGGTCATCAGCCTGGATCCACAATTTCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATCAAGCCGAACACAGGTCATCAGCCTGGATCCACAATTTCACTT  398

seq1  CACGTCCTTCTTTTCTCTGCTCTCAGAACCCCTTTCCACGTCGAGACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCCTTCTTTTCTCTGCTCTCAGAACCCCTTTCCACGTCGAGACTGG  448

seq1  TCCTTGGCAGTGAGTAAGGCTAGAGTGTGACAAGTAAGAGAATATACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCAGTGAGTAAGGCTAGAGTGTGACAAGTAAGAGAATATACACT  498

seq1  TGGTGGGATGAGCTGATAAGAATGGGCAGGCAGTCTTTGCTTTCTCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGATGAGCTGATAAGAATGGGCAGGCAGTCTTTGCTTTCTCCTGC  548

seq1  TTGGATGGTGCACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGGTGCACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTA  598

seq1  TCACAGAAAAAGGAGCTTCAGTTGGGGAAATGCCTCCATGAGATCCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAAAAGGAGCTTCAGTTGGGGAAATGCCTCCATGAGATCCAACT  648

seq1  GTAAAACATTTTCCCAATTAGTGATCAAGGGGGAGAGGCCCCTTGTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACATTTTCCCAATTAGTGATCAAGGGGGAGAGGCCCCTTGTGGGT  698

seq1  GGGACCATCTCTGGGCTGGTAGTCTTGATTCTATAAGAGAGCAGGCTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGACCATCTCTGGGCTGGTAGTCTTGATTCTATAAGAGAGCA-GCTAAG  747

seq1  CAAGCCAGGGGAGGCAAGTCAGTAAAGAACATCCCTCCATGGCCTCTGCA  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAGCCAGGGGAGGCAAGTCAGTAAAG-ACATCCCTCCATGGCCTCTGCA  796

seq1  TCAGCTCCTGCTCCCTGACCTGTTTGAGTTCCAGTCCTGACTTCCTTTGG  850
      |||||||||||||||||| ||| |||||||||||||||||||||| ||||
seq2  TCAGCTCCTGCTCCCTGA-CTG-TTGAGTTCCAGTCCTGACTTCC-TTGG  843

seq1  TGATAAACAGAAACATGGAAGTGTAAGCTGAATAAATCCTTTCCTCCCCA  900
      |||| |||||||||||||||||||||||||||||||||||||| | ||||
seq2  TGAT-AACAGAAACATGGAAGTGTAAGCTGAATAAATCCTTTCTTTCCCA  892

seq1  ACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAG  950
      ||||||||||||||||||||| ||||||||| |||| | || ||||||||
seq2  ACTTGCTTCTTGGTCATGATG-TTGTGCAGG-ATAG-ATCCTTGACTAAG  939

seq1  ACAGATGGTTTTTGTATTTGTGTTGATTACACAAACACAAGATAGCAAGC  1000
      |||||| | |||||||||||   ||| ||||||||||  ||||||| |||
seq2  ACAGATTG-TTTTGTATTTGGTGTGA-TACACAAACA-TAGATAGC-AGC  985

seq1  ACTCACTACGTTTTTCTCATGT-GTCTATTGATGGTAGATTATGAAAGGC  1049
      |||||| ||| ||||||||||| ||||| |||  | ||| ||||||||||
seq2  ACTCAC-ACG-TTTTCTCATGTGGTCTA-TGA--GGAGA-TATGAAAGGC  1029

seq1  C  1050
      |
seq2  C  1030