BAC Information

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BAC

Clone NameB6Ng01-004G14
Chromosome4 (Build37)
Map Location 123,590,482 - 123,735,404
singlet/doubletdoublet
Overlap geneRragc
Upstream geneMfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp
Downstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004G14.bB6Ng01-004G14.g
ACCDH841828DH841829
length1,0271,022
definitionDH841828|Mus musculus domesticus DNA, BAC clone: B6Ng01-004G14, 5' end.DH841829|Mus musculus domesticus DNA, BAC clone: B6Ng01-004G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,590,482 - 123,591,507)(123,734,376 - 123,735,404)
sequence
gaattcaaggtctgggactggaaagatcattcagtggttaagtgcacgtg
gctgctcttccagaggtcctgagttcaattcccagcatccacacatggtg
gctcacaactgcctatattggttgtgccctcttttgacacgcagatgtac
acaaagatagagcactcacacattaaaaaaaaaaatcaataataaaaaac
tatcttagaaaaaagatttttgaggtcactgggcgtggttagccaccaaa
ttcaggtcctctgtaggatcagtgcatgcaccattgaaccccttccagca
tttctttctgtcaaggacttgagtgaagacaagatgctgctgaatggagt
aggaaacgtatctgtgcagttcggctacacgtcaggggcttcatcataaa
gtaaaagttaggggctgtagacatggctcatgggcagatgtgcgtgggtg
caggcctgaagaactcagttcagtgcctgaatcccacaaggtggcaggag
aatcatctcctgagagttgtcttctgagtgtgcatacctgcatactcata
agaaatataaaactaaaagttctgaccaggcatgagagtataagcctata
gtcctagcacttgaaggcaagagggtcaggaattttcgagtcatctctga
ctacacagtaagttagaggccagccttggctatgtaagactgtctctaac
caccctactagagtatgtgtggatttgtgtatgtatgtgtcctcacatct
tgcttaccttacaaagttcatgttaggatcagattaaatacattggatat
aaaaatgccttgcaaactataaaggattacttgcagatcagtctgtcaga
tctgccttgcaaatcagtactggcacatcctgtaagtatcatagaattgg
aaaggttggttgtagcctacttttggatcatgttttgaacatgataatct
acagtacctatactgctgggcacaaacacatataaagttctatagtggta
aagtatatagttatacaagtgagtagg
gaattctttaccaggaaaggcactgttcagatctacaggtgaaatagtct
tttaaacgaaagtagagacagcattaccagcagacatggactccgaagtt
tctcaggcagcaagaaccgttcagatggcaatcgggtcagcccaagagca
aaagggcagaagccataaatgtagaaagcctccctcattttgcatctctt
tagaagacaagctatggtttacgctttttaaaaatgatcgtgtgtgttta
tatgtacaagtcaatttgggcaaagcaataacaaagacatggaagaaatg
cagaggcggcactctagagcagccgagagtatcacgtgagcatcacgtga
cacagattgctagaccatgatttgaagactgacttcctaaaccaaatatg
cacctttaaggcccaggttaatgacaataaaacagagaacagatgaccat
ggttgtttaccaaagtcctgtctgctaagggcttgtctccagcacgcagt
gttattggcaggtagtggaaccattgtgaactggagcgtggtccaaggga
gttaggtctgtgaagggaacgtgggaccccactcacccctcagcctcctc
tctctatctgttccctgcccaccatgagtggagcagcttcattccatagc
acacttcccccacaaacccaaaagcggcgagaccacccagttatgaactg
tagtctccaaaactgcaagccaaaatatattatccctcccctctgtgttt
tacgacagtgttggagaaccgactaacacgtaagtcaatgtggaagacaa
cataaaatcagttttagtttggtttgtgtgtggtttttttgagacagggt
ttcctctgtgtagccctgtctgtcctgaaactcgatctatagaccaggct
ggccttcaactcagagatctgcctgcctctggccttccaagtgctaggat
tgaggtatgtgccaccactgctggcataaatagttttaaaatcatttagc
aaaaagaagatatatgaacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_123590482_123591507
seq2: B6Ng01-004G14.b_46_1072

seq1  GAATTCAAGGTCTGGGACTGGAAAGATCATTCAGTGGTTAAGTGCACGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCTGGGACTGGAAAGATCATTCAGTGGTTAAGTGCACGTG  50

seq1  GCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCATCCACACATGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCATCCACACATGGTG  100

seq1  GCTCACAACTGCCTATATTGGTTGTGCCCTCTTTTGACACGCAGATGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACTGCCTATATTGGTTGTGCCCTCTTTTGACACGCAGATGTAC  150

seq1  ACAAAGATAGAGCACTCACACATTAAAAAAAAAAATCAATAATAAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATAGAGCACTCACACATTAAAAAAAAAAATCAATAATAAAAAAC  200

seq1  TATCTTAGAAAAAAGATTTTTGAGGTCACTGGGCGTGGTTAGCCACCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGAAAAAAGATTTTTGAGGTCACTGGGCGTGGTTAGCCACCAAA  250

seq1  TTCAGGTCCTCTGTAGGATCAGTGCATGCACCATTGAACCCCTTCCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCCTCTGTAGGATCAGTGCATGCACCATTGAACCCCTTCCAGCA  300

seq1  TTTCTTTCTGTCAAGGACTTGAGTGAAGACAAGATGCTGCTGAATGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTGTCAAGGACTTGAGTGAAGACAAGATGCTGCTGAATGGAGT  350

seq1  AGGAAACGTATCTGTGCAGTTCGGCTACACGTCAGGGGCTTCATCATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACGTATCTGTGCAGTTCGGCTACACGTCAGGGGCTTCATCATAAA  400

seq1  GTAAAAGTTAGGGGCTGTAGACATGGCTCATGGGCAGATGTGCGTGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTTAGGGGCTGTAGACATGGCTCATGGGCAGATGTGCGTGGGTG  450

seq1  CAGGCCTGAAGAACTCAGTTCAGTGCCTGAATCCCACAAGGTGGCAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGAAGAACTCAGTTCAGTGCCTGAATCCCACAAGGTGGCAGGAG  500

seq1  AATCATCTCCTGAGAGTTGTCTTCTGAGTGTGCATACCTGCATACTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTCCTGAGAGTTGTCTTCTGAGTGTGCATACCTGCATACTCATA  550

seq1  AGAAATATAAAACTAAAAGTTCTGACCAGGCATGAGAGTATAAGCCTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATAAAACTAAAAGTTCTGACCAGGCATGAGAGTATAAGCCTATA  600

seq1  GTCCTAGCACTTGAAGGCAAGAGGGTCAGGAATTTTCGAGTCATCTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGCACTTGAAGGCAAGAGGGTCAGGAATTTTCGAGTCATCTCTGA  650

seq1  CTACACAGTAAGTTAGAGGCCAGCCTTGGCTATGTAAGACTGTCTCTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGTAAGTTAGAGGCCAGCCTTGGCTATGTAAGACTGTCTCTAAC  700

seq1  CACCCTACTAGAGTATGTGTGGATTTGTGTATGTATGTGTCCTCACATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTACTAGAGTATGTGTGGATTTGTGTATGTATGTGTCCTCACATCT  750

seq1  TGCTTACCTTACAAAGTTCATGTTAGGATCAGATTAAATACATTGGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACCTTACAAAGTTCATGTTAGGATCAGATTAAATACATTGGATAT  800

seq1  AAAAATGCCTTGCAAACTATAAAGGATTACTTGCAGATCAGTCTGTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCCTTGCAAACTATAAAGGATTACTTGCAGATCAGTCTGTCAGA  850

seq1  TCTGCCTTGCAAATCAGTACTGGCACAT-CTGTAAGTATCATAGAATTGG  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTGCCTTGCAAATCAGTACTGGCACATCCTGTAAGTATCATAGAATTGG  900

seq1  AAAGGTTGGTTGTAGCCTAC-TTTGGATCA-GGTTTGAACATGAAAATCT  947
      |||||||||||||||||||| ||||||||| | ||||||||||| |||||
seq2  AAAGGTTGGTTGTAGCCTACTTTTGGATCATGTTTTGAACATGATAATCT  950

seq1  ACAGTACCTATACTGCTGGCCACAAACACATATAAAGTCCTATAGTGGTT  997
      ||||||||||||||||||| |||||||||||||||||| ||||||||| |
seq2  ACAGTACCTATACTGCTGGGCACAAACACATATAAAGTTCTATAGTGG-T  999

seq1  AAAGTATATAGTTATACAAAGTGAGTAGG  1026
      ||||||||||||||||| |||||||||||
seq2  AAAGTATATAGTTATAC-AAGTGAGTAGG  1027

seq1: chr4_123734376_123735404
seq2: B6Ng01-004G14.g_68_1089 (reverse)

seq1  ATTGTTCATATTATCTTCCTTTTTTGCTAAATGATTTTAAAAACTGATTT  50
      |||||||||| |||||||  ||||||||||||||||||||||     | |
seq2  ATTGTTCATA-TATCTTC--TTTTTGCTAAATGATTTTAAAA----CTAT  43

seq1  TTATGCCAGGCAGTGGTGGCACATACCTCTAATCCTAGCACTTGGAAGG-  99
      |||||||| |||||||||||||||||||| ||||||||||||||||||| 
seq2  TTATGCCA-GCAGTGGTGGCACATACCTC-AATCCTAGCACTTGGAAGGC  91

seq1  CAGAGGCAGGCAGATCTCTGAGTTTGAGGCCAGCCTGGTCTATAGATCGA  149
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  CAGAGGCAGGCAGATCTCTGAGTTGAAGGCCAGCCTGGTCTATAGATCGA  141

seq1  GTTTCAGGACAGACAGGGCTACACAGA-GAAACCCTGTCTCAAAAAAACC  198
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTTCAGGACAGACAGGGCTACACAGAGGAAACCCTGTCTCAAAAAAACC  191

seq1  ACACACAAACCAAACTAAAACTGATTTTATGTTGTCTTCCACATTGACTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAACCAAACTAAAACTGATTTTATGTTGTCTTCCACATTGACTT  241

seq1  ACGTGTTAGTCGGTTCTCCAACACTGTCGTAAAACACAGAGGGGAGGGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTAGTCGGTTCTCCAACACTGTCGTAAAACACAGAGGGGAGGGAT  291

seq1  AATATATTTTGGCTTGCAGTTTTGGAGACTACAGTTCATAACTGGGTGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTTGGCTTGCAGTTTTGGAGACTACAGTTCATAACTGGGTGGT  341

seq1  CTCGCCGCTTTTGGGTTTGTGGGGGAAGTGTGCTATGGAATGAAGCTGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCGCTTTTGGGTTTGTGGGGGAAGTGTGCTATGGAATGAAGCTGCT  391

seq1  CCACTCATGGTGGGCAGGGAACAGATAGAGAGAGGAGGCTGAGGGGTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATGGTGGGCAGGGAACAGATAGAGAGAGGAGGCTGAGGGGTGAG  441

seq1  TGGGGTCCCACGTTCCCTTCACAGACCTAACTCCCTTGGACCACGCTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCCCACGTTCCCTTCACAGACCTAACTCCCTTGGACCACGCTCCA  491

seq1  GTTCACAATGGTTCCACTACCTGCCAATAACACTGCGTGCTGGAGACAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAATGGTTCCACTACCTGCCAATAACACTGCGTGCTGGAGACAAG  541

seq1  CCCTTAGCAGACAGGACTTTGGTAAACAACCATGGTCATCTGTTCTCTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGCAGACAGGACTTTGGTAAACAACCATGGTCATCTGTTCTCTGT  591

seq1  TTTATTGTCATTAACCTGGGCCTTAAAGGTGCATATTTGGTTTAGGAAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTCATTAACCTGGGCCTTAAAGGTGCATATTTGGTTTAGGAAGT  641

seq1  CAGTCTTCAAATCATGGTCTAGCAATCTGTGTCACGTGATGCTCACGTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCAAATCATGGTCTAGCAATCTGTGTCACGTGATGCTCACGTGA  691

seq1  TACTCTCGGCTGCTCTAGAGTGCCGCCTCTGCATTTCTTCCATGTCTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCGGCTGCTCTAGAGTGCCGCCTCTGCATTTCTTCCATGTCTTTG  741

seq1  TTATTGCTTTGCCCAAATTGACTTGTACATATAAACACACACGATCATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTTTGCCCAAATTGACTTGTACATATAAACACACACGATCATTT  791

seq1  TTAAAAAGCGTAAACCATAGCTTGTCTTCTAAAGAGATGCAAAATGAGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGCGTAAACCATAGCTTGTCTTCTAAAGAGATGCAAAATGAGGG  841

seq1  AGGCTTTCTACATTTATGGCTTCTGCCCTTTTGCTCTTGGGCTGACCCGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTCTACATTTATGGCTTCTGCCCTTTTGCTCTTGGGCTGACCCGA  891

seq1  TTGCCATCTGAACGGTTCTTGCTGCCTGAGAAACTTCGGAGTCCATGTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATCTGAACGGTTCTTGCTGCCTGAGAAACTTCGGAGTCCATGTCT  941

seq1  GCTGGTAATGCTGTCTCTACTTTCGTTTAAAAGACTATTTCACCTGTAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAATGCTGTCTCTACTTTCGTTTAAAAGACTATTTCACCTGTAGA  991

seq1  TCTGAACAGTGCCTTTCCTGGTAAAGAATTC  1029
      |||||||||||||||||||||||||||||||
seq2  TCTGAACAGTGCCTTTCCTGGTAAAGAATTC  1022