BAC Information

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BAC

Clone NameB6Ng01-004I17
Chromosome4 (Build37)2 (Build37)
Map Location 84,128,171 - 84,128,24453,189,695 - 53,189,800
singlet/doubletsingletsinglet
Overlap geneBnc2
Upstream genePsip1, LOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004I17.bB6Ng01-004I17.g
ACCDH841922DH841923
length425192
definitionDH841922|Mus musculus domesticus DNA, BAC clone: B6Ng01-004I17, 5' end.DH841923|Mus musculus domesticus DNA, BAC clone: B6Ng01-004I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,128,171 - 84,128,244)(53,189,695 - 53,189,800)
sequence
aatgtgcccacccctcataaaagaataagtaatgcctgcattataaggaa
tacaatgagctttcataaattacactaaaaaagagaaatagtcttggaat
aaatttgtaatcaaggacaaacattcatcctaggtcgggtccaaagatga
agccctaggtatgcacaatggtaaagctaggccgtgtgaaactgctgctt
tgaacttataaagaacttacaaaataaaactttagacttacaatatacat
ccttctgtaactccccttctacaggacattttatctatgaggttattctt
tcttacatagagaacttatctaaaagctataaaaaactgaaagcaataat
aaagtttggtgtagccatctctgcttcatctggtgtgtgtgtgtctgtgt
gtgtgtgtgtgtgtgtgtgtgtgtg
caggacagtcagtctctctctctctctctctctctctctctctctctctc
tctctgtctctgtctgtgtgtgtgtgggactgtataaatgttttggtggt
atgacatatttggttacatatttctctgtggttttcgacggggggtgtgt
gcgtgagagcgtgtgtgtcaggctgatccgtgtgtgtgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84128171_84128244
seq2: B6Ng01-004I17.b_330_475 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACCA-----  45
      |||||||||||||||||||||||||||||| ||||||||||||||     
seq2  CACACACACACACACACACACACACACACAGACACACACACACCAGATGA  50

seq1  -----------CTGGAC---------------------------------  51
                 ||  ||                                 
seq2  AGCAGAGATGGCTACACCAAACTTTATTATTGCTTTCAGTTTTTTATAGC  100

seq1  -------------CTCTA----------AAATATCTCATAGATAAA  74
                   |||||          ||  | ||||||||||||
seq2  TTTTAGATAAGTTCTCTATGTAAGAAAGAATAACCTCATAGATAAA  146

seq1: chr2_53189695_53189800
seq2: B6Ng01-004I17.g_84_263 (reverse)

seq1  CAGACACACACA---------CAGACACACA----------CAGACA---  28
      ||||||||||||         | ||||||||          || |||   
seq2  CAGACACACACACGGATCAGCCTGACACACACGCTCTCACGCACACACCC  50

seq1  ------------CACAGA--------------------------CAC---  37
                  ||||||                          |||   
seq2  CCCGTCGAAAACCACAGAGAAATATGTAACCAAATATGTCATACCACCAA  100

seq1  ---------ACA--CACACACACACACAGACACACACAGAGAGAGAGAGA  76
               |||  | |||||||||||||||| | |||||||||||||||
seq2  AACATTTATACAGTCCCACACACACACAGACAGAGACAGAGAGAGAGAGA  150

seq1  GAGAAAGAGAGAGAGAGAGAGAGAGAGAGA  106
      |||| |||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  180