BAC Information

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BAC

Clone NameB6Ng01-004J07
Chromosome4 (Build37)
Map Location 67,611,799 - 67,741,617
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004J07.bB6Ng01-004J07.g
ACCDH841948DH841949
length1,13779
definitionDH841948|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J07, 5' end.DH841949|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,740,452 - 67,741,617)(67,611,799 - 67,611,877)
sequence
gaattcacattttagtgagaaaatagaggaaagaagtacttcagtgacac
tggttaattagaagtgattacaacatgtgaggattacatatgaagacaac
aaaatagtgcataggacaaggctgcacacagagaaacatgcaaaccttag
cggaaaccactgagtcagaaacccatcgtggaacggggctctccctcagg
agtattgaagcttttgtatcggtgaaccagattaagaggtccagtctagc
caatccagcctttcacttccagccaatatcatatcagagacaatggtaca
tacattagtaaactgagatctaaactctctgctctccttaaatttcaggc
aagttatgacataaggtcattttgaaatgaagaaataaagacagcttact
gtgctctataatttcctggtaatagtagtgaagagttactatttttcctt
tttcattatcaaaaaggggaaagctgagcggtgtgtttgacagctcagct
tctcttttacttctcactgacaatcataatgattaaaataaaccaatcca
agggcagaaaatcatgaaaacaaatagaactatagatgctaaataagatc
catcaagtgagccttcccaacatcattgtgattctgtgtgtctatcacaa
tacatcaattagttaatcaataaatcaaaacggaggagcaatatatggga
gaaagggaatatgcatctaacttagacttatttcatttatttcaagcaca
cacataggaatatataattaaaagaaaagggaaaagagaggactggtata
aggagaataggaggaggtgataaatatgatcaaatacacattttaaattt
aaatatatttaaatacagctaaaatatttgaaaacatgtcaccagacacc
ctttcatacttcagtggatcaatacactgcactacatatgtctttgtttc
tgtcttgagacaatggtttagtgccttacatacaattatctctaagatat
tgagtcagaagattagagagtgtttacaaaacatcagtagacagtgcacg
cacgactaacattattcagcttcatacatatgtgagtattagttctatgt
atgtgtcaagtattttatgacttcattatactgttat
caatatgtatatgagaatatgagatggagagacagcatgagagagtgaga
gagagaaagggggaggagggagggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67740452_67741617
seq2: B6Ng01-004J07.b_45_1181 (reverse)

seq1  ATAACAGATAATAAATGAAGTCATATAAAAATATACTTTTGACACATTAC  50
      ||||||| ||   |||||||||||   ||||||     |||||||| |||
seq2  ATAACAG-TA--TAATGAAGTCAT---AAAATA----CTTGACACA-TAC  39

seq1  ATAGAAATTTAAAATACTTCACATATGTATGAAGCTGAATATATGTTAGT  100
      |||||| |    ||||| ||||||||||||||||||||||| ||||||||
seq2  ATAGAACT----AATAC-TCACATATGTATGAAGCTGAATA-ATGTTAGT  83

seq1  CTGTTGCGTGCACTTGTCTTACTGAATGTTTGTATACACTCTTCTAATCT  150
      |   ||||||||| |||| ||||||   |||||| |||||| ||||||| 
seq2  C--GTGCGTGCAC-TGTC-TACTGATGTTTTGTAAACACTC-TCTAATC-  127

seq1  TTCTGACTTCAATATCTTTAGAGATAATTTGTATGTAAGGCACTAAACCA  200
      ||||||| |||||||| |||||||||| ||||||||||||||||||||||
seq2  TTCTGAC-TCAATATC-TTAGAGATAA-TTGTATGTAAGGCACTAAACCA  174

seq1  TTGTCTCAAGACAGAAACAAAGACATATTGTAGTGCAGTGTATTGATCCA  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGTCTCAAGACAGAAACAAAGACATA-TGTAGTGCAGTGTATTGATCCA  223

seq1  CTGAAGTATGAAAGGGTGTCTGGTGACATGTTTTTCAAATATTTTAGCTT  300
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  CTGAAGTATGAAAGGGTGTCTGGTGACATG-TTTTCAAATATTTTAGC-T  271

seq1  GTATTTAAATATATTTAAATTTAAAATGTGTATTTGATCATATTTATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAATATATTTAAATTTAAAATGTGTATTTGATCATATTTATCAC  321

seq1  CTCCTCCTATTCTCCTTATACCAGTCCTCTCTTTTCCCTTTTCTTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTATTCTCCTTATACCAGTCCTCTCTTTTCCCTTTTCTTTTAAT  371

seq1  TATATATTCCTATGTGTGTGCTTGAAATAAATGAAATAAGTCTAAGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTCCTATGTGTGTGCTTGAAATAAATGAAATAAGTCTAAGTTAG  421

seq1  ATGCATATTCCCTTTCTCCCATATATTGCTCCTCCGTTTTGATTTATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATTCCCTTTCTCCCATATATTGCTCCTCCGTTTTGATTTATTGA  471

seq1  TTAACTAATTGATGTATTGTGATAGACACACAGAATCACAATGATGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAATTGATGTATTGTGATAGACACACAGAATCACAATGATGTTGG  521

seq1  GAAGGCTCACTTGATGGATCTTATTTAGCATCTATAGTTCTATTTGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCACTTGATGGATCTTATTTAGCATCTATAGTTCTATTTGTTTT  571

seq1  CATGATTTTCTGCCCTTGGATTGGTTTATTTTAATCATTATGATTGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTTCTGCCCTTGGATTGGTTTATTTTAATCATTATGATTGTCAG  621

seq1  TGAGAAGTAAAAGAGAAGCTGAGCTGTCAAACACACCGCTCAGCTTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTAAAAGAGAAGCTGAGCTGTCAAACACACCGCTCAGCTTTCCC  671

seq1  CTTTTTGATAATGAAAAAGGAAAAATAGTAACTCTTCACTACTATTACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGATAATGAAAAAGGAAAAATAGTAACTCTTCACTACTATTACCA  721

seq1  GGAAATTATAGAGCACAGTAAGCTGTCTTTATTTCTTCATTTCAAAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTATAGAGCACAGTAAGCTGTCTTTATTTCTTCATTTCAAAATGA  771

seq1  CCTTATGTCATAACTTGCCTGAAATTTAAGGAGAGCAGAGAGTTTAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTCATAACTTGCCTGAAATTTAAGGAGAGCAGAGAGTTTAGATC  821

seq1  TCAGTTTACTAATGTATGTACCATTGTCTCTGATATGATATTGGCTGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTACTAATGTATGTACCATTGTCTCTGATATGATATTGGCTGGAA  871

seq1  GTGAAAGGCTGGATTGGCTAGACTGGACCTCTTAATCTGGTTCACCGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGCTGGATTGGCTAGACTGGACCTCTTAATCTGGTTCACCGATA  921

seq1  CAAAAGCTTCAATACTCCTGAGGGAGAGCCCCGTTCCACGATGGGTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTTCAATACTCCTGAGGGAGAGCCCCGTTCCACGATGGGTTTCT  971

seq1  GACTCAGTGGTTTCCGCTAAGGTTTGCATGTTTCTCTGTGTGCAGCCTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTGGTTTCCGCTAAGGTTTGCATGTTTCTCTGTGTGCAGCCTTG  1021

seq1  TCCTATGCACTATTTTGTTGTCTTCATATGTAATCCTCACATGTTGTAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGCACTATTTTGTTGTCTTCATATGTAATCCTCACATGTTGTAAT  1071

seq1  CACTTCTAATTAACCAGTGTCACTGAAGTACTTCTTTCCTCTATTTTCTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTAATTAACCAGTGTCACTGAAGTACTTCTTTCCTCTATTTTCTC  1121

seq1  ACTAAAATGTGAATTC  1166
      ||||||||||||||||
seq2  ACTAAAATGTGAATTC  1137

seq1: chr4_67611799_67611877
seq2: B6Ng01-004J07.g_71_149

seq1  CAATATGTATATGAGAATATGAGATGGAGAGACAGCATGAGAGAGTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGTATATGAGAATATGAGATGGAGAGACAGCATGAGAGAGTGAGA  50

seq1  GAGAGAAAGGGGGAGGAGGGAGGGAGAGG  79
      |||||||||||||||||||||||||||||
seq2  GAGAGAAAGGGGGAGGAGGGAGGGAGAGG  79