BAC Information

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BAC

Clone NameB6Ng01-004L10
Chromosome4 (Build37)
Map Location 94,407,980 - 94,588,229
singlet/doubletdoublet
Overlap geneTek, 4930579C15Rik
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74
Downstream geneLOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411, 2310009E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004L10.bB6Ng01-004L10.g
ACCDH842050DH842051
length1,1241,063
definitionDH842050|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L10, 5' end.DH842051|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,407,980 - 94,409,134)(94,587,151 - 94,588,229)
sequence
gaattcatacaaaaaagttctgttccaaaacagttgtctcactgatgcta
gaaactgatttctggagcgaagatgacaagaaggaggaggtcatgttctt
gtcagaaagtagaacacagaaagcttggtttctgctgaaggtctctgtta
attcctgactttcattctgtacccaagcttccatgaacttgagtgaggct
tggtgatcacacaaacagcctcaggagttcttccttcaagtcagactcta
atagtgtacttcattaatgtggaaggggatatagagcttatatgtctagt
ctacttggtggcctgatattccttttttgttgaacaaacataatggaaga
ataaagactctgtatttgcctcaataaaggttgctctgggtagcaaagca
gcctgctaaggcataaactggaagaggtttgtggcttccataacaactca
gattctggcgcttgctccttccactggagtattattgccaatttcagctt
gcaaacaagttctcatagaacttagcagtgttaccccctctttaattcca
tatctacaccaaacctggctgcaggctctaaagaattgtgtacacttaaa
aaaaaaaaaaacaccacttctgtttcatcatggatgtcctatatgattca
cactgataggaagtcttcaggtcacacatcttcagctgtctttcctgtct
tgtgtgacattttaaacaactggattcagagataacagagatgttgtctg
ggctggcaaaggaaacgcaatagtaaggtcaggaaagtggtcccaggagc
cttctccttggactgggatcagacacctcttgggattgttttccaaggga
agatctggcctttctacagaaactctcccttcaaccattgctcttgttag
cacttccccttagccctaccctgaaagacttccaggagagtctaattttc
tattgacatctctccaggagaagaattatccagtcgatctcaaagactat
gctgtgtctttagactttcttatgctgtgaccctaatacagtctcatggt
tggtggcccagcataaaatatttcatgctacttcatacaaacttgctact
gttggaatctaatgtaaattctga
gaattccagaataatcagacccccccccccccgcaaagaggcttagaaac
tgtcttagtttaggtatttgtttgttttttgttttgttttgttgctgtga
agagacaccaggacctaggcaactcttataaagaaaggacaatatttaat
tgaggccagcttacagtttcagagatttagtccattataatcatggtggg
aaacatgacagcatccaggcagacatggtgctagaggagctgaaagttgt
ccaacttgatccaaagacagcagaaggtaactgtcttctacaggcaacca
ggatgcctgattcttctttgggcaaagcttgagtacaggagaccttgaag
cctgcccccacagtgacacacttcctccaacaaggccacacgaacctatg
gtcactccctatggctaagcactgaaacaaatgaatctgtgggtgccata
cctattcaaaccaccataggaaatataggtgtattaaagggggacagttc
attttaatataatctgcttgaatattcccaaatgggtctcaaagtcagat
aacaatcattcacaactgtacacatttcattcttcttggacaatataatt
tttggttggtactagggactaaaccttgctctcaaacatgctagcaaggg
ctctactgctgggttatgacacaggtacaatcattaaagtgttcaaaagt
cagagagcattgacatgagaatatatatttacttcttacctaaatattac
ctagaaagtcgtgaagattcctgggaccctgggagtgggcatgggagaac
tgtgagaaggaaagtttcagcattaagtatattttcaagaaggtcaaaca
tctgacaggaaagcagtttcatcggattttatcagatccacaatgtttcc
agagccaggcatgattctgtaatttaactctttcaggacttttaaaaagt
atttctactactttgcaatatcagcacactgagtttgtctctaataaaat
ggcaacttgtaattccacactgtatcaagaatacaaggcatgcacagcag
tacagacactgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_94407980_94409134
seq2: B6Ng01-004L10.b_45_1168

seq1  GAATTCATACAAAAAAGTTCTGTTCCAAAACAGTTGTCTCACTGATGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAAAAAAGTTCTGTTCCAAAACAGTTGTCTCACTGATGCTA  50

seq1  GAAACTGATTTCTGGAGCGAAGATGACAAGAAGGAGGAGGTCATGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGATTTCTGGAGCGAAGATGACAAGAAGGAGGAGGTCATGTTCTT  100

seq1  GTCAGAAAGTAGAACACAGAAAGCTTGGTTTCTGCTGAAGGTCTCTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAGTAGAACACAGAAAGCTTGGTTTCTGCTGAAGGTCTCTGTTA  150

seq1  ATTCCTGACTTTCATTCTGTACCCAAGCTTCCATGAACTTGAGTGAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGACTTTCATTCTGTACCCAAGCTTCCATGAACTTGAGTGAGGCT  200

seq1  TGGTGATCACACAAACAGCCTCAGGAGTTCTTCCTTCAAGTCAGACTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATCACACAAACAGCCTCAGGAGTTCTTCCTTCAAGTCAGACTCTA  250

seq1  ATAGTGTACTTCATTAATGTGGAAGGGGATATAGAGCTTATATGTCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTACTTCATTAATGTGGAAGGGGATATAGAGCTTATATGTCTAGT  300

seq1  CTACTTGGTGGCCTGATATTCCTTTTTTGTTGAACAAACATAATGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGGTGGCCTGATATTCCTTTTTTGTTGAACAAACATAATGGAAGA  350

seq1  ATAAAGACTCTGTATTTGCCTCAATAAAGGTTGCTCTGGGTAGCAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACTCTGTATTTGCCTCAATAAAGGTTGCTCTGGGTAGCAAAGCA  400

seq1  GCCTGCTAAGGCATAAACTGGAAGAGGTTTGTGGCTTCCATAACAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTAAGGCATAAACTGGAAGAGGTTTGTGGCTTCCATAACAACTCA  450

seq1  GATTCTGGCGCTTGCTCCTTCCACTGGAGTATTATTGCCAATTTCAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGCGCTTGCTCCTTCCACTGGAGTATTATTGCCAATTTCAGCTT  500

seq1  GCAAACAAGTTCTCATAGAACTTAGCAGTGTTACCCCCTCTTTAATTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAGTTCTCATAGAACTTAGCAGTGTTACCCCCTCTTTAATTCCA  550

seq1  TATCTACACCAAACCTGGCTGCAGGCTCTAAAGAATTGTGTACACTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACACCAAACCTGGCTGCAGGCTCTAAAGAATTGTGTACACTTAAA  600

seq1  AAAAAAAAAAACACCACTTCTGTTTCATCATGGATGTCCTATATGATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACACCACTTCTGTTTCATCATGGATGTCCTATATGATTCA  650

seq1  CACTGATAGGAAGTCTTCAGGTCACACATCTTCAGCTGTCTTTCCTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATAGGAAGTCTTCAGGTCACACATCTTCAGCTGTCTTTCCTGTCT  700

seq1  TGTGTGACATTTTAAACAACTGGATTCAGAGATAACAGAGATGTTGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACATTTTAAACAACTGGATTCAGAGATAACAGAGATGTTGTCTG  750

seq1  GGCTGGCAAAGGAAACGCAATAGTAAGGTCAGGAAAGTGGTCCCAGGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCAAAGGAAACGCAATAGTAAGGTCAGGAAAGTGGTCCCAGGAGC  800

seq1  CTTCTCCTTGGACTGGGATCAGGACACCTCTTGGGATTGTTTTCCAAGGG  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTCTCCTTGGACTGGGATCA-GACACCTCTTGGGATTGTTTTCCAAGGG  849

seq1  AAGATCTGGCC-TTCTACAGAAACTCTCCCTTCCAACCATTGCTCTTGTT  899
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  AAGATCTGGCCTTTCTACAGAAACTCTCCCTT-CAACCATTGCTCTTGTT  898

seq1  AGCACTTCCCCCTTAGCCCTACCCTGAAAGAACTTCCAGGAAGAGTCTAA  949
      ||||||| |||||||||||||||||||||| ||||||||| |||||||||
seq2  AGCACTT-CCCCTTAGCCCTACCCTGAAAG-ACTTCCAGG-AGAGTCTAA  945

seq1  TTTTTCTA-TGACATCTCTCCAGGAGGAAAGAAATTATCCAAGTCGATCT  998
       ||||||| |||||||||||||||||  ||| |||||||| |||||||||
seq2  -TTTTCTATTGACATCTCTCCAGGAG--AAG-AATTATCC-AGTCGATCT  990

seq1  CAAAAGACTATGCTGTGTCCTTTTAGAACTTTCCTAATGCTGTGACCCTT  1048
      | |||||||||||||||||  ||||| ||||| || ||||||||||||  
seq2  C-AAAGACTATGCTGTGTC--TTTAG-ACTTT-CTTATGCTGTGACCC--  1033

seq1  TAATACAGTTCTTCATGGTGTGGTGAGCCCCAGCCATAAAATTATTTTCA  1098
      |||||||||   ||||||| ||||  | ||||| ||||||||   |||||
seq2  TAATACAGT--CTCATGGT-TGGT--GGCCCAG-CATAAAAT--ATTTCA  1075

seq1  TTGCTACTTCATAACTATAATTTTGCTACTGTTGTGAATCATAATGTAAA  1148
       ||||||||||    || ||  |||||||||||| ||||| |||||||||
seq2  -TGCTACTTCA----TACAAACTTGCTACTGTTG-GAATC-TAATGTAAA  1118

seq1  TATCTGA  1155
      | |||||
seq2  T-TCTGA  1124

seq1: chr4_94587151_94588229
seq2: B6Ng01-004L10.g_67_1129 (reverse)

seq1  GACAGGTGTCTGTACTGCTGTTGGCATGCCCTGGTTATTCTTTGGAATTA  50
      |||| ||||||||||||||||  ||||||| ||  |||||||  ||  ||
seq2  GACA-GTGTCTGTACTGCTGT--GCATGCCTTG--TATTCTT--GA--TA  41

seq1  CAAGTGTGGAATTACAAGTTTGCCATTTTATTAAGAGACAAACTCAGTGT  100
      | |||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  C-AGTGTGGAATTACAAG-TTGCCATTTTATT-AGAGACAAACTCAGTGT  88

seq1  GCTTGATATTGCAAAAGTAGTAGAAATAACTTTTTAAAAGTCCTGAAAAG  150
      || ||||||||| |||||||||||||| ||||||||||||||||| ||||
seq2  GC-TGATATTGC-AAAGTAGTAGAAAT-ACTTTTTAAAAGTCCTG-AAAG  134

seq1  AGTTAAATTACAGAATCATGCCTGGCTCCGGAAACATTGTGGATCTGATA  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTTAAATTACAGAATCATGCCTGGCTCTGGAAACATTGTGGATCTGATA  184

seq1  AAATCCGATGAAACTGCTTTCCTGTCAGATGTTTGACCTTCTTGAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCGATGAAACTGCTTTCCTGTCAGATGTTTGACCTTCTTGAAAATA  234

seq1  TACTTAATGCTGAAACTTTCCTTCTCACAGTTCTCCCATGCCCACTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAATGCTGAAACTTTCCTTCTCACAGTTCTCCCATGCCCACTCCCA  284

seq1  GGGTCCCAGGAATCTTCACGACTTTCTAGGTAATATTTAGGTAAGAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCAGGAATCTTCACGACTTTCTAGGTAATATTTAGGTAAGAAGTA  334

seq1  AATATATATTCTCATGTCAATGCTCTCTGACTTTTGAACACTTTAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATTCTCATGTCAATGCTCTCTGACTTTTGAACACTTTAATGAT  384

seq1  TGTACCTGTGTCATAACCCAGCAGTAGAGCCCTTGCTAGCATGTTTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGTGTCATAACCCAGCAGTAGAGCCCTTGCTAGCATGTTTGAGA  434

seq1  GCAAGGTTTAGTCCCTAGTACCAACCAAAAATTATATTGTCCAAGAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTTTAGTCCCTAGTACCAACCAAAAATTATATTGTCCAAGAAGAA  484

seq1  TGAAATGTGTACAGTTGTGAATGATTGTTATCTGACTTTGAGACCCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTGTACAGTTGTGAATGATTGTTATCTGACTTTGAGACCCATTT  534

seq1  GGGAATATTCAAGCAGATTATATTAAAATGAACTGTCCCCCTTTAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATATTCAAGCAGATTATATTAAAATGAACTGTCCCCCTTTAATACA  584

seq1  CCTATATTTCCTATGGTGGTTTGAATAGGTATGGCACCCACAGATTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATTTCCTATGGTGGTTTGAATAGGTATGGCACCCACAGATTCATT  634

seq1  TGTTTCAGTGCTTAGCCATAGGGAGTGACCATAGGTTCGTGTGGCCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGTGCTTAGCCATAGGGAGTGACCATAGGTTCGTGTGGCCTTGT  684

seq1  TGGAGGAAGTGTGTCACTGTGGGGGCAGGCTTCAAGGTCTCCTGTACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAGTGTGTCACTGTGGGGGCAGGCTTCAAGGTCTCCTGTACTCA  734

seq1  AGCTTTGCCCAAAGAAGAATCAGGCATCCTGGTTGCCTGTAGAAGACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCCCAAAGAAGAATCAGGCATCCTGGTTGCCTGTAGAAGACAGT  784

seq1  TACCTTCTGCTGTCTTTGGATCAAGTTGGACAACTTTCAGCTCCTCTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTGCTGTCTTTGGATCAAGTTGGACAACTTTCAGCTCCTCTAGC  834

seq1  ACCATGTCTGCCTGGATGCTGTCATGTTTCCCACCATGATTATAATGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCTGCCTGGATGCTGTCATGTTTCCCACCATGATTATAATGGAC  884

seq1  TAAATCTCTGAAACTGTAAGCTGGCCTCAATTAAATATTGTCCTTTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCTGAAACTGTAAGCTGGCCTCAATTAAATATTGTCCTTTCTTT  934

seq1  ATAAGAGTTGCCTAGGTCCTGGTGTCTCTTCACAGCAACAAAACAAAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTTGCCTAGGTCCTGGTGTCTCTTCACAGCAACAAAACAAAACA  984

seq1  AAAAACAAACAAATACCTAAACTAAGACAGTTTCTAAGCCTCTTTGCGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACAAATACCTAAACTAAGACAGTTTCTAAGCCTCTTTGCGGG  1034

seq1  GGGGGGGGGGTCTGATTATTCTGGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  GGGGGGGGGGTCTGATTATTCTGGAATTC  1063