BAC Information

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BAC

Clone NameB6Ng01-004P05
Chromosome4 (Build37)
Map Location 124,409,394 - 124,543,387
singlet/doubletdoublet
Overlap geneSf3a3, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50
Upstream gene6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, LOC664991
Downstream geneEpha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004P05.bB6Ng01-004P05.g
ACCDH842223DH842224
length8001,124
definitionDH842223|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P05, 5' end.DH842224|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,542,592 - 124,543,387)(124,409,394 - 124,410,524)
sequence
gaattcaggagagggtatcagagccgctggaactggagttagggatgggt
ggttatgaggcatcatgggattgctaggaacccaacccaggtactgtgca
agagcagcaagtgagcctaactgttgaaccatcttgcctgaccctgtaac
ttctttttaaaacctttaaaaaaaaaagttctgtgtgctgtatgtgtgtg
gtgtgtatgcatgtgccacagtgtgcatgtggaggaaagaggacagtctt
aggagttgtttttctttccacagtaggccccagtgattgaattcaggtct
ttaggattggcagtagaagcttttattatcctgagagccctgatctttct
tttttttttttttttaaagatttatttattcattatatgtaagtacactg
tagctgtcttcagacacaccagaagagggcgtcagatctcgttacggatg
gttgtgagccaccatgtggttgctgggatttgaactccagaccttcttac
ccactgagccatctcaccagccctgatctttcatttttaacattatgtaa
ttgatagttgcaacatagtatagaaaaagaatccaggtgctcctaactga
ccatctctccagtctgtatagaccggtggttctcaactttcctaatgttt
gagaccttttaatatagttcctcatgttgtggtgacccctaaccataaag
ttatttcattcatacttcataactgtaatattgttacttttttttaaaaa
attatttatttaatttgtttgttttgtttatttatttatttatttattta

gaattcagtgtggagctaacagagccataccttttcaggaagaatatgaa
gactccagtggaaatgttgtgaacaagaagacatacgaggatctgaaaag
acaagggctgctctagtgctcggttccctgagaagcctgagaaaagcttc
cccaaccaaatgttcttaaagactttttgctatgtagtatctaccttgta
gaaaccttgcagattgcagagttgagatgtgttttatctttgttttatat
taaaaagatctgtgggaaaataaagccagcccttgttttggatgtgttgt
ttctgaaacccaagtttatgaattttttgtttttcttttttgagacaggg
tttctctgtatagccctggctgtcctggaactcactttgtagatcaggtt
ggactcaaactcagaaatccacctgcctctgcctcccaagtgctgggatt
aaaggtgtgtgccaccaccacccacccagcctaggtttatgaagtaactt
cgtcctttttgttttgtttttttttaatatttaatgtatgtgagtacact
gttgctgtcttcatacacaccagaagagggcatctgatcccattactgat
ggttgtgagccaccttgtggttgctgggatttgaactagacctatggaag
atcagtcaatggtcttatccactgagccatctctccaggccccatccttt
tgttcttaatgccttctagccttgttctcaccagcttccacagtggctta
gatttaggaggtagttattactgcctaaatatgattctgtatgtgtctca
ctgacagcctaggctaccaactcccatctatcctacctcagcctcctgtg
tgctgagattacagatctgtgctgccacattggggcatgtgtcaagtatt
gagacctaacttttctccccgtcactgccactttccaaatgagcatcatg
gccagcatgaacttctgcccccagttgagtgccagtcatgtgtgcataca
gagcaaacaggagatgagctaggcctgaaggcttaaaatgccttcaagtt
ttgctgttttaattgcataaagaattagctatatagttgtcttagttcca
gatctgggacagaagcaggtatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124542592_124543387
seq2: B6Ng01-004P05.b_49_848 (reverse)

seq1  TAAATAAATAAATAAATAAATAAAC-AAACAAACAAA-TAAATAAATAAT  48
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TAAATAAATAAATAAATAAATAAACAAAACAAACAAATTAAATAAATAAT  50

seq1  TTTTT-AAAAAAAGTAACAATATTACAGTTATGAAGTATGAATGAAATAA  97
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAAAAGTAACAATATTACAGTTATGAAGTATGAATGAAATAA  100

seq1  CTTTATGGTTAGGGGTCACCACAACATGAGGAACTATATTAAAAGGTCTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGGTTAGGGGTCACCACAACATGAGGAACTATATTAAAAGGTCTC  150

seq1  -AACATTAGGAAAGTTGAGAACCACCGGTCTATACAGACTGGAGAGATGG  196
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTAGGAAAGTTGAGAACCACCGGTCTATACAGACTGGAGAGATGG  200

seq1  TCAGTTAGGAGCACCTGGATTCTTTTTCTATACTATGTTGCAACTATCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGGAGCACCTGGATTCTTTTTCTATACTATGTTGCAACTATCAA  250

seq1  TTACATAATGTTAAAAATGAAAGATCAGGGCTGGTGAGATGGCTCAGTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAATGTTAAAAATGAAAGATCAGGGCTGGTGAGATGGCTCAGTGG  300

seq1  GTAAGAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  350

seq1  CATCCGTAACGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGTAACGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTA  400

seq1  CAGTGTACTTACATATAATGAATAAATAAATCTTTAAAAAAAAAAAAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACTTACATATAATGAATAAATAAATCTTTAAAAAAAAAAAAAAA  450

seq1  AGAAAGATCAGGGCTCTCAGGATAATAAAAGCTTCTACTGCCAATCCTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATCAGGGCTCTCAGGATAATAAAAGCTTCTACTGCCAATCCTAA  500

seq1  AGACCTGAATTCAATCACTGGGGCCTACTGTGGAAAGAAAAACAACTCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGAATTCAATCACTGGGGCCTACTGTGGAAAGAAAAACAACTCCT  550

seq1  AAGACTGTCCTCTTTCCTCCACATGCACACTGTGGCACATGCATACACAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTCCTCTTTCCTCCACATGCACACTGTGGCACATGCATACACAC  600

seq1  CACACACATACAGCACACAGAACTTTTTTTTTTAAAGGTTTTAAAAAGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATACAGCACACAGAACTTTTTTTTTTAAAGGTTTTAAAAAGAA  650

seq1  GTTACAGGGTCAGGCAAGATGGTTCAACAGTTAGGCTCACTTGCTGCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGGGTCAGGCAAGATGGTTCAACAGTTAGGCTCACTTGCTGCTCT  700

seq1  TGCACAGTACCTGGGTTGGGTTCCTAGCAATCCCATGATGCCTCATAACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTACCTGGGTTGGGTTCCTAGCAATCCCATGATGCCTCATAACC  750

seq1  ACCCATCCCTAACTCCAGTTCCAGCGGCTCTGATACCCTCTCCTGAATTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCCCTAACTCCAGTTCCAGCGGCTCTGATACCCTCTCCTGAATTC  800

seq1: chr4_124409394_124410524
seq2: B6Ng01-004P05.g_70_1193

seq1  GAATTCAGTGTGGAGCTAACAGAGCCATACCTTTTCAGGAAGAATATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGGAGCTAACAGAGCCATACCTTTTCAGGAAGAATATGAA  50

seq1  GACTCCAGTGGAAATGTTGTGAACAAGAAGACATACGAGGATCTGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGTGGAAATGTTGTGAACAAGAAGACATACGAGGATCTGAAAAG  100

seq1  ACAAGGGCTGCTCTAGTGCTCGGTTCCCTGAGAAGCCTGAGAAAAGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGCTGCTCTAGTGCTCGGTTCCCTGAGAAGCCTGAGAAAAGCTTC  150

seq1  CCCAACCAAATGTTCTTAAAGACTTTTTGCTATGTAGTATCTACCTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCAAATGTTCTTAAAGACTTTTTGCTATGTAGTATCTACCTTGTA  200

seq1  GAAACCTTGCAGATTGCAGAGTTGAGATGTGTTTTATCTTTGTTTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTGCAGATTGCAGAGTTGAGATGTGTTTTATCTTTGTTTTATAT  250

seq1  TAAAAAGATCTGTGGGAAAATAAAGCCAGCCCTTGTTTTGGATGTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGATCTGTGGGAAAATAAAGCCAGCCCTTGTTTTGGATGTGTTGT  300

seq1  TTCTGAAACCCAAGTTTATGAATTTTTTGTTTTTCTTTTTTGAGACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACCCAAGTTTATGAATTTTTTGTTTTTCTTTTTTGAGACAGGG  350

seq1  TTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGTT  400

seq1  GGACTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATT  450

seq1  AAAGGTGTGTGCCACCACCACCCACCCAGCCTAGGTTTATGAAGTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGTGCCACCACCACCCACCCAGCCTAGGTTTATGAAGTAACTT  500

seq1  CGTCCTTTTTGTTTTGTTTTTTTTTAATATTTAATGTATGTGAGTACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTTTTGTTTTGTTTTTTTTTAATATTTAATGTATGTGAGTACACT  550

seq1  GTTGCTGTCTTCATACACACCAGAAGAGGGCATCTGATCCCATTACTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTCTTCATACACACCAGAAGAGGGCATCTGATCCCATTACTGAT  600

seq1  GGTTGTGAGCCACCTTGTGGTTGCTGGGATTTGAACTAGACCTATGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGCCACCTTGTGGTTGCTGGGATTTGAACTAGACCTATGGAAG  650

seq1  ATCAGTCAATGGTCTTATCCACTGAGCCATCTCTCCAGGCCCCATCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAATGGTCTTATCCACTGAGCCATCTCTCCAGGCCCCATCCTTT  700

seq1  TGTTCTTAATGCCTTCTAGCCTTGTTCTCACCAGCTTCCACAGTGGCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAATGCCTTCTAGCCTTGTTCTCACCAGCTTCCACAGTGGCTTA  750

seq1  GATTTAGGAGGTAGTTATTACTGCCTAAATATGATTCTGTATGTGTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGGAGGTAGTTATTACTGCCTAAATATGATTCTGTATGTGTCTCA  800

seq1  CTGACAGCCTAGGCTACCAACTCCCATCTATCCTACCTCAGCCTCCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCCTAGGCTACCAACTCCCATCTATCCTACCTCAGCCTCCTGTG  850

seq1  TGCTGAGATTACAGATCTGTGCTGCCACATT-GGGCATGTGTCAAGTAAT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TGCTGAGATTACAGATCTGTGCTGCCACATTGGGGCATGTGTCAAGT-AT  899

seq1  TGAGACCTAACTTTTCTCCCCGTCACTGCCACTTCCCAAATGAGCATCAT  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGAGACCTAACTTTTCTCCCCGTCACTGCCACTTTCCAAATGAGCATCAT  949

seq1  -GCCAGCATGAAC-TCTGCCCCCAGTTGAGTGCCAGCCATTGGTGTGCAT  997
       |||||||||||| |||||||||||||||||||||| |||  ||||||||
seq2  GGCCAGCATGAACTTCTGCCCCCAGTTGAGTGCCAGTCAT--GTGTGCAT  997

seq1  ACAAGAGCAAACAGGAGGTTGAGCTAGGCCTGAAGGCTTAAAATGGCTTC  1047
      || ||||||||||||| | |||||||||||||||||||||||||| ||||
seq2  AC-AGAGCAAACAGGA-GATGAGCTAGGCCTGAAGGCTTAAAATGCCTTC  1045

seq1  AAGGTTTGCCTGTTTTATTTGCATAAAGAAATTAGCTATATAGTTGGCCT  1097
      ||| |||| |||||||| |||||||||| |||||||||||||||| | ||
seq2  AAGTTTTG-CTGTTTTAATTGCATAAAG-AATTAGCTATATAGTT-GTCT  1092

seq1  TAGTCCCAGCACCTGGGGACAGAGGCAGGTATCT  1131
      |||| |||| | || |||||||| ||||||||||
seq2  TAGTTCCAG-ATCT-GGGACAGAAGCAGGTATCT  1124