BAC Information

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BAC

Clone NameB6Ng01-004P15
Chromosome4 (Build37)
Map Location 30,187,996 - 30,342,167
singlet/doubletdoublet
Overlap geneLOC665185
Upstream genenone
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004P15.bB6Ng01-004P15.g
ACCDH842240DH842241
length7651,082
definitionDH842240|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P15, 5' end.DH842241|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,187,996 - 30,188,760)(30,341,082 - 30,342,167)
sequence
gaattcaatctgctcatactcattggaaatataagcaatatattgacttt
tcctttttaatgtggaaatattactctttttaattaagtaagtaagaaag
tcactttacatccagaccacaggatctcttctctcctccccatttccccc
cactacatcccccaattcactccttttctctttctattcatggaggcttc
ccatgaatatcaccagctcttacatatcagatgcagtttgcctaggtgca
tcttcttctactgaagttacatgaggcatcccactaggggagatgaatca
tacaggcaaccaacaaagccagaggcagcccttgtcctgctattaagagc
ccaaaatgaagaacaagctacataactgtagcttataggtcagtcccata
aatgctccttttttggtgtttcagtttctctgagctcgtgtgggcccagg
ttagttgatactgtggaatttcttgcggtgtccttgactgctctggctac
ttcagaccttcttctccctcttctgcaggatttctcaaactttacctaat
gttaggctgtggatctctgcatctgtttccatcagttgctggataaagcc
tccgtgaagatgattatgctaggttcctgtgccagcacatcttgtaagca
ggaaaaattgtaggtttaaagttttggcttttctttccaaatgatatttt
gtccttctgttatgagtgatgatctcttaggttttgtgagtgtgtgtgtg
tgtgtgtgtgtgtgt
gaattctttgtgccttcccatacaatgagtgactgtaccattgaatgaat
atggtcaatggataatatgtcagaggtggattcatactttctttgcaatc
atcacattaagtaatagcaatatgatcttttaaaagttttccaattcagt
ttttgtatgttgcctggtttcacctactaaaattatttggggatgcagca
ctatatctctggcttgttgaggtagaaaataatgttttatgagcaattta
ttgtgtacattatttgctgtttctaagtttcttataatttttagtcctcg
actattataataaacaagagacaaccaatgaggtatccttagtttaaaaa
atgatatttttatttatgaaaaatgcagtcatcagcttgtacatttgtca
gagaatcttagcttaaatatataaacagtgtatttaaaatgaataggagc
aaaatgggattgcacatggttttgtgcctacttgtgtacataataatata
ctggagaaaatagatttgttgtaaataaatattccaatttaatatgatgg
agaattgtatacaaattggtatttaagtatgaacaaattaaagttcaact
attgcaaccattaaataaaaataataaaatacttaattgatattttttag
atgcttgagaatgaagaagagaaatactaatgaatacagtatacagtaca
aataaatattatttaatttactataagtatttatgcaacagacttttgaa
attagcacatattgtagaagtattcataatatgtatgttgtaatatatgt
aaaatatgtaaatggtcgacactttataaaggggaataatgcatatttca
gatatcatatgataactaataaaacacccagtgtcaagtatgagctcatt
ttttgttttttttttgtattattggtcagtagggtctaacagagttccaa
actgtcttagttaggatttaatgctgtgaacagacaccatgaccaaggca
actcctaataagaacaacatttaattgaggcttggtttaccagggttaga
aggtcagtctatttatcattcaggcaggcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30187996_30188760
seq2: B6Ng01-004P15.b_48_812

seq1  GAATTCAATCTGCTCATACTCATTGGAAATATAAGCAATATATTGACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTGCTCATACTCATTGGAAATATAAGCAATATATTGACTTT  50

seq1  TCCTTTTTAATGTGGAAATATTACTCTTTTTAATTAAGTAAGTAAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTAATGTGGAAATATTACTCTTTTTAATTAAGTAAGTAAGAAAG  100

seq1  TCACTTTACATCCAGACCACAGGATCTCTTCTCTCCTCCCCATTTCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTACATCCAGACCACAGGATCTCTTCTCTCCTCCCCATTTCCCCC  150

seq1  CACTACATCCCCCAATTCACTCCTTTTCTCTTTCTATTCATGGAGGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATCCCCCAATTCACTCCTTTTCTCTTTCTATTCATGGAGGCTTC  200

seq1  CCATGAATATCACCAGCTCTTACATATCAGATGCAGTTTGCCTAGGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAATATCACCAGCTCTTACATATCAGATGCAGTTTGCCTAGGTGCA  250

seq1  TCTTCTTCTACTGAAGTTACATGAGGCATCCCACTAGGGGAGATGAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTACTGAAGTTACATGAGGCATCCCACTAGGGGAGATGAATCA  300

seq1  TACAGGCAACCAACAAAGCCAGAGGCAGCCCTTGTCCTGCTATTAAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCAACCAACAAAGCCAGAGGCAGCCCTTGTCCTGCTATTAAGAGC  350

seq1  CCAAAATGAAGAACAAGCTACATAACTGTAGCTTATAGGTCAGTCCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGAAGAACAAGCTACATAACTGTAGCTTATAGGTCAGTCCCATA  400

seq1  AATGCTCCTTTTTTGGTGTTTCAGTTTCTCTGAGCTCGTGTGGGCCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCCTTTTTTGGTGTTTCAGTTTCTCTGAGCTCGTGTGGGCCCAGG  450

seq1  TTAGTTGATACTGTGGAATTTCTTGCGGTGTCCTTGACTGCTCTGGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGATACTGTGGAATTTCTTGCGGTGTCCTTGACTGCTCTGGCTAC  500

seq1  TTCAGACCTTCTTCTCCCTCTTCTGCAGGATTTCTCAAACTTTACCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACCTTCTTCTCCCTCTTCTGCAGGATTTCTCAAACTTTACCTAAT  550

seq1  GTTAGGCTGTGGATCTCTGCATCTGTTTCCATCAGTTGCTGGATAAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCTGTGGATCTCTGCATCTGTTTCCATCAGTTGCTGGATAAAGCC  600

seq1  TCCGTGAAGATGATTATGCTAGGTTCCTGTGCCAGCACATCTTGTAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGAAGATGATTATGCTAGGTTCCTGTGCCAGCACATCTTGTAAGCA  650

seq1  GGAAAAATTGTAGGTTTAAAGTTTTGGCTTTTCTTTCCAAATGATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATTGTAGGTTTAAAGTTTTGGCTTTTCTTTCCAAATGATATTTT  700

seq1  GTCCTTCTGTTATGAGTGATGATCTCTTAGGTTTTGTGAGTGTGTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTGTTATGAGTGATGATCTCTTAGGTTTTGTGAGTGTGTGTGTG  750

seq1  TGTGTGTGTGTGTGT  765
      |||||||||||||||
seq2  TGTGTGTGTGTGTGT  765

seq1: chr4_30341082_30342167
seq2: B6Ng01-004P15.g_68_1149 (reverse)

seq1  CATGCCTGCCTGAATGAT-AATAGACTGAACCTCTGAACCT-GTAAACC-  47
      |||||||||||||||||| |||||||||| | ||| | ||| ||||||| 
seq2  CATGCCTGCCTGAATGATAAATAGACTGACCTTCTAACCCTGGTAAACCA  50

seq1  AGCCTCAATTAAATGTTGTTCTTATTA-GAGTTGCCTTGGTCATGGTGTC  96
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCCTCAATTAAATGTTGTTCTTATTAGGAGTTGCCTTGGTCATGGTGTC  100

seq1  TGTTCACAGCATTAAAATCCTAACTAAGACAGTTTGGAACTCTGTAAGAC  146
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TGTTCACAGCATT-AAATCCTAACTAAGACAGTTTGGAACTCTGTTAGAC  149

seq1  CCTACTGACCAATAATCCAAAAAAAAAAAAAAAAAAAAAAAATGAGCTCA  196
      ||||||||||||||||       | |||||||||| ||||||||||||||
seq2  CCTACTGACCAATAAT-------ACAAAAAAAAAACAAAAAATGAGCTCA  192

seq1  TACTTGACACTGGGTGTTTTATTAGTTATCATATGATATCTGAAATATGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACACTGGGTGTTTTATTAGTTATCATATGATATCTGAAATATGC  242

seq1  ATTATTCCCCTTTATAAAGTGTCGACCATTTACATATTTTACATATATTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCCCTTTATAAAGTGTCGACCATTTACATATTTTACATATATTA  292

seq1  CAACATACATATTATGAATACTTCTACAATATGTGCTAATTTCAAAAGTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATACATATTATGAATACTTCTACAATATGTGCTAATTTCAAAAGTC  342

seq1  TGTTGCATAAATACTTATAGTAAATTAAATAATATTTATTTGTACTGTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATAAATACTTATAGTAAATTAAATAATATTTATTTGTACTGTAT  392

seq1  ACTGTATTCATTAGTATTTCTCTTCTTCATTCTCAAGCATCTAAAAAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTCATTAGTATTTCTCTTCTTCATTCTCAAGCATCTAAAAAATA  442

seq1  TCAATTAAGTATTTTATTATTTTTATTTAATGGTTGCAATAGTTGAACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAAGTATTTTATTATTTTTATTTAATGGTTGCAATAGTTGAACTT  492

seq1  TAATTTGTTCATACTTAAATACCAATTTGTATACAATTCTCCATCATATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTTCATACTTAAATACCAATTTGTATACAATTCTCCATCATATT  542

seq1  AAATTGGAATATTTATTTACAACAAATCTATTTTCTCCAGTATATTATTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGAATATTTATTTACAACAAATCTATTTTCTCCAGTATATTATTA  592

seq1  TGTACACAAGTAGGCACAAAACCATGTGCAATCCCATTTTGCTCCTATTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAAGTAGGCACAAAACCATGTGCAATCCCATTTTGCTCCTATTC  642

seq1  ATTTTAAATACACTGTTTATATATTTAAGCTAAGATTCTCTGACAAATGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATACACTGTTTATATATTTAAGCTAAGATTCTCTGACAAATGT  692

seq1  ACAAGCTGATGACTGCATTTTTCATAAATAAAAATATCATTTTTTAAACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGATGACTGCATTTTTCATAAATAAAAATATCATTTTTTAAACT  742

seq1  AAGGATACCTCATTGGTTGTCTCTTGTTTATTATAATAGTCGAGGACTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATACCTCATTGGTTGTCTCTTGTTTATTATAATAGTCGAGGACTAA  792

seq1  AAATTATAAGAAACTTAGAAACAGCAAATAATGTACACAATAAATTGCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAAGAAACTTAGAAACAGCAAATAATGTACACAATAAATTGCTC  842

seq1  ATAAAACATTATTTTCTACCTCAACAAGCCAGAGATATAGTGCTGCATCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACATTATTTTCTACCTCAACAAGCCAGAGATATAGTGCTGCATCC  892

seq1  CCAAATAATTTTAGTAGGTGAAACCAGGCAACATACAAAAACTGAATTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAATTTTAGTAGGTGAAACCAGGCAACATACAAAAACTGAATTGG  942

seq1  AAAACTTTTAAAAGATCATATTGCTATTACTTAATGTGATGATTGCAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTTAAAAGATCATATTGCTATTACTTAATGTGATGATTGCAAAG  992

seq1  AAAGTATGAATCCACCTCTGACATATTATCCATTGACCATATTCATTCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATGAATCCACCTCTGACATATTATCCATTGACCATATTCATTCAA  1042

seq1  TGGTACAGTCACTCATTGTATGGGAAGGCACAAAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGTCACTCATTGTATGGGAAGGCACAAAGAATTC  1082