BAC Information

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BAC

Clone NameB6Ng01-004P22
ChromosomeY (Build37)4 (Build37)
Map Location 1,870,346 - 1,870,57572,331,410 - 72,332,364
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004P22.bB6Ng01-004P22.g
ACCDH842254DH842255
length257955
definitionDH842254|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P22, 5' end.DH842255|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,575)(72,331,410 - 72,332,364)
sequence
tttgtttagccctgagccccatcttttaatggggctagagaaagtatcca
aggagctaaagagatctgtaaccctgtaggtgcaacattatgaactaacc
agtactccagagctcttgactctagctgcatatgtatcaaaagatggcct
agtaggccatcactggaaagagaggcccattggacagacaaactatatga
cccagtacaggggaatgccagggccaaaatgggaatgggtgggtagggaa
gtggggg
gaattcattcatgactttattcctttgtttttcttttttacatttctaat
gttatccctttcctggtttcccctccaaaaacatcctatcctatcccctc
cccctgcccaccagcccacccaatcttgtttctctctcctggtattcccc
tacactggggcattgagccttcataggaccaagggtctctcctcacattg
atgtccaacaaggccaccctctgctacataagcagttagaggcacgagtc
tcagcatgtgtacactttggttgattgtttagttcctgggagctctgggg
atattggttagttcatattgttgttcctcctatggggctgcaaatgcctt
cagctccttgggtcctttctctagctcctccattggggacactgtgctta
gttcaatggatgggtgagagcatctacctctgtatttgttgggtactggc
agagcctctcaggagactgctatatcagactcctgtcagtaagcacttgt
tagcatccacaatagtgtctggttttggtgactgtatttggaatagttca
tgcagggcaagtcagaagatacagttgaagacaagtagtcagaaggtccc
agaaaattagaagaaattgccagagttactttgaggccaagcagagcatt
tcagtgagaagcagagaaaagcctgtttgaatctgttatcttggagagga
gtttgggccagaacattttttaaaccagctagttagagttcagaaagaac
tagaaaggatgagattctttagtagtaagcctcctagacattaataacat
atagtgtgggtgtgagcatgtatgagcaggcatgcatgcttgtgctctca
tgcataagcacacaagcttgtgtgtgtgtgtgtgtgtgtgtgcatttgtg
tatgtgtgatgggggaggggttaaccctgatggaggtacactgcacatgg
taaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870575
seq2: B6Ng01-004P22.b_88_310

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||| |||||| |||||| ||||||  
seq2  CTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGTAACCCTGTAGGTG--  48

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
       ||||||||||||||||||| ||| || |||||||||||||| |||||||
seq2  -CAACATTATGAACTAACCAGTACTCCAGAGCTCTTGACTCTAGCTGCAT  97

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTAGGCCATCACTGGAAAGAGAGGCCCATT  147

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||||  |||||  |||||| ||||||||||||||| |||||||||||||
seq2  GGACAGACAAAC--TATATGACCCAGTACAGGGGAATGCCAGGGCCAAAA  195

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGGGG  230
       |||  | ||||||||||||| ||||||||
seq2  TGGG--AATGGGTGGGTAGGGAAGTGGGGG  223

seq1: chr4_72331410_72332364
seq2: B6Ng01-004P22.g_65_1019

seq1  GAATTCATTCATGACTTTATTCCTTTGTTTTTCTTTTTTACATTTCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATGACTTTATTCCTTTGTTTTTCTTTTTTACATTTCTAAT  50

seq1  GTTATCCCTTTCCTGGTTTCCCCTCCAAAAACATCCTATCCTATCCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCTTTCCTGGTTTCCCCTCCAAAAACATCCTATCCTATCCCCTC  100

seq1  CCCCTGCCCACCAGCCCACCCAATCTTGTTTCTCTCTCCTGGTATTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCCACCAGCCCACCCAATCTTGTTTCTCTCTCCTGGTATTCCCC  150

seq1  TACACTGGGGCATTGAGCCTTCATAGGACCAAGGGTCTCTCCTCACATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGGGCATTGAGCCTTCATAGGACCAAGGGTCTCTCCTCACATTG  200

seq1  ATGTCCAACAAGGCCACCCTCTGCTACATAAGCAGTTAGAGGCACGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAACAAGGCCACCCTCTGCTACATAAGCAGTTAGAGGCACGAGTC  250

seq1  TCAGCATGTGTACACTTTGGTTGATTGTTTAGTTCCTGGGAGCTCTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGTGTACACTTTGGTTGATTGTTTAGTTCCTGGGAGCTCTGGGG  300

seq1  ATATTGGTTAGTTCATATTGTTGTTCCTCCTATGGGGCTGCAAATGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGTTAGTTCATATTGTTGTTCCTCCTATGGGGCTGCAAATGCCTT  350

seq1  CAGCTCCTTGGGTCCTTTCTCTAGCTCCTCCATTGGGGACACTGTGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTTGGGTCCTTTCTCTAGCTCCTCCATTGGGGACACTGTGCTTA  400

seq1  GTTCAATGGATGGGTGAGAGCATCTACCTCTGTATTTGTTGGGTACTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATGGATGGGTGAGAGCATCTACCTCTGTATTTGTTGGGTACTGGC  450

seq1  AGAGCCTCTCAGGAGACTGCTATATCAGACTCCTGTCAGTAAGCACTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCTCAGGAGACTGCTATATCAGACTCCTGTCAGTAAGCACTTGT  500

seq1  TAGCATCCACAATAGTGTCTGGTTTTGGTGACTGTATTTGGAATAGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCCACAATAGTGTCTGGTTTTGGTGACTGTATTTGGAATAGTTCA  550

seq1  TGCAGGGCAAGTCAGAAGATACAGTTGAAGACAAGTAGTCAGAAGGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCAAGTCAGAAGATACAGTTGAAGACAAGTAGTCAGAAGGTCCC  600

seq1  AGAAAATTAGAAGAAATTGCCAGAGTTACTTTGAGGCCAAGCAGAGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTAGAAGAAATTGCCAGAGTTACTTTGAGGCCAAGCAGAGCATT  650

seq1  TCAGTGAGAAGCAGAGAAAAGCCTGTTTGAATCTGTTATCTTGGAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGAAGCAGAGAAAAGCCTGTTTGAATCTGTTATCTTGGAGAGGA  700

seq1  GTTTGGGCCAGAACATTTTTTAAACCAGCTAGTTAGAGTTCAGAAAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGCCAGAACATTTTTTAAACCAGCTAGTTAGAGTTCAGAAAGAAC  750

seq1  TAGAAAGGATGAGATTCTTTAGTAGTAAGCCTCCTAGACATTAATAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGATGAGATTCTTTAGTAGTAAGCCTCCTAGACATTAATAACAT  800

seq1  ATAGTGTGGGTGTGAGCATGTATGAGCAGGCATGCATGCTTGTGCTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGGGTGTGAGCATGTATGAGCAGGCATGCATGCTTGTGCTCTCA  850

seq1  TGCATAAGCACACAAGCTTGTGTGTGTGTGTGTGTGTGTGTGCATTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAGCACACAAGCTTGTGTGTGTGTGTGTGTGTGTGTGCATTTGTG  900

seq1  TATGTGTGATGGGGGAGGGGTAGACACAGATGATGTTACACTGCACATGG  950
      |||||||||||||||||||||  || | ||||  | ||||||||||||||
seq2  TATGTGTGATGGGGGAGGGGTTAACCCTGATGGAGGTACACTGCACATGG  950

seq1  TAACA  955
      |||||
seq2  TAACA  955