BAC Information

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BAC

Clone NameB6Ng01-005A10
Chromosome4 (Build37)
Map Location 119,195,481 - 119,196,668
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052
Downstream geneAA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005A10.bB6Ng01-005A10.g
ACCDH842278DH842279
length1,1831,233
definitionDH842278|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A10, 5' end.DH842279|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgcagagtgcatggaaccagtcagagaaagaacaagttttgaa
tgaaagttcatggttttgtgcattgtgagctggagagctggtggttacat
gcaggttcttagaaatgtagatttggatcctagaggaggggtcaggactc
aagactttagaatcatttcatggaaggaatacttggcacctagaatgtag
gtgaaagtgattagtcaataaattcagaactgtgctgtctttcagagcta
caacacagtgaatgcaagccacatatgccattcaaaaatgccatcaactg
ggctcagagatggctcagtgggcaaaaataagcctgaagacctgtttgac
tcccaggacccatatacaaagctcagttccatgacaacacctgtaatctc
agcactcttactgtgaaccaggaggcagagacaggaggattccatggaaa
cctgcaggtcaactctcctggagcatccagtgtagcataaaaataagaga
gaccctggctcaacaaggtggaaggtgaaaaccaactccagaatgttgtc
cattgatgtcacattcattccatggtattcacatgtatacacacacactc
atgtgcacacataatccctgtcaacaaccatattaaaacacacagaagaa
acaggtaaaattaaaccttagtagtatattttattttactaaatatgtcc
agattgttgtcacttttacatttaatcagcacaaagattgccaaagagct
ctttgatatcccttttttgcaagtaatccgtgtgcaccttacacttgcag
cgtgtgagtccatcatgcctgcaattaatttcaagggctcagtaaccttc
atggggctgcaatagtggctgtattaggcagtgcaattagagggagagca
gacagcaagtggagccttgagagacacctgcatttgggagataagaggag
ggaaagagccagtgagaaattgacagagcagagataatcaggatagcacg
atgtctaaaagtccaagcatctttcctagggagactcagggaagaagtca
tcaccacacttcattcggcactagcatcttcactcttgcatttggaaagg
ctgtcctggccgtaaggtggcctctgccctacaaaacatccatttgctag
gactttaggagactccatgtattggacccaaat
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaggccagt
ttgctgattggcctcagggcagtcggcttcaaggtccgccctatgcggag
tccccgccctgcgtagtgcgtcagcaatgcgcagagaggcagtgcgcaga
gaggcagtgcgcagactcattcattcccagagaggaacaaaggaaaatac
aacaggcatttccggtctttgaaggagccgagggtgggcgtgtccacgct
ccggtagaatacttacaaattaaagaaattgctgagtcggttcgtaaata
cggaaccaatgctaattttaccttggtgcagttagacaggctcgctggca
tggcactaactcctgctgactggcaaacggttgtaaaagccgctctccct
agtatgggcaaatacatggaatggaaagcgctttggcacgaagctgcaca
agcgcaggcccgagcaaacgcagctgctttgactccagagcagagagatt
ggacttttgacttgttaacgggtcagggagcttattctgctgatcagaca
aactaccattggggagcttatgcccagatttcttccacggctattagggc
ctggaaggcgctctctcgagcaggtgaaaccactggtcagttaacaaaga
taatccagggacctcaggaatccttctcagattttgtggccagaatgaca
gaggcagcagagcgtatttttggagagtcagagcaagctgcgcctctaat
agaacagctaatctatgagcaagccacaaaggagtgccgagcggccatag
ccccagaaagaacaaaggcttacaagactggctcaggtctgtcgagagct
tgggggacctctcagcaatgcagtttagcggctgccatccttcaatccca
aacgctccatgagcagaatgatcagaggacatgtttactgcggaaagcct
ggcatttaagaaagattgcagagcttcagataacaggaggactcctccct
ctttgctctaagtgttggcaaggtaatcaatagaggctgaccgtggtcgc
tctgtgaggtatatcaggacgaagtctttccccacttgatatcaatcaac
tgatgatgcaaaacgtctactagtctctgtcagtcctcaagattgggaac
cggcggtctggatcacgatgagacgattgcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_119195481_119196668
seq2: B6Ng01-005A10.b_51_1233

seq1  GAATTCATGCAGAGTGCATGGAACCAGTCAGAGAAAGAACAAGTTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAGAGTGCATGGAACCAGTCAGAGAAAGAACAAGTTTTGAA  50

seq1  TGAAAGTTCATGGTTTTGTGCATTGTGAGCTGGAGAGCTGGTGGTTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTCATGGTTTTGTGCATTGTGAGCTGGAGAGCTGGTGGTTACAT  100

seq1  GCAGGTTCTTAGAAATGTAGATTTGGATCCTAGAGGAGGGGTCAGGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTCTTAGAAATGTAGATTTGGATCCTAGAGGAGGGGTCAGGACTC  150

seq1  AAGACTTTAGAATCATTTCATGGAAGGAATACTTGGCACCTAGAATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTAGAATCATTTCATGGAAGGAATACTTGGCACCTAGAATGTAG  200

seq1  GTGAAAGTGATTAGTCAATAAATTCAGAACTGTGCTGTCTTTCAGAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTGATTAGTCAATAAATTCAGAACTGTGCTGTCTTTCAGAGCTA  250

seq1  CAACACAGTGAATGCAAGCCACATATGCCATTCAAAAATGCCATCAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAGTGAATGCAAGCCACATATGCCATTCAAAAATGCCATCAACTG  300

seq1  GGCTCAGAGATGGCTCAGTGGGCAAAAATAAGCCTGAAGACCTGTTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGATGGCTCAGTGGGCAAAAATAAGCCTGAAGACCTGTTTGAC  350

seq1  TCCCAGGACCCATATACAAAGCTCAGTTCCATGACAACACCTGTAATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGACCCATATACAAAGCTCAGTTCCATGACAACACCTGTAATCTC  400

seq1  AGCACTCTTACTGTGAACCAGGAGGCAGAGACAGGAGGATTCCATGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTTACTGTGAACCAGGAGGCAGAGACAGGAGGATTCCATGGAAA  450

seq1  CCTGCAGGTCAACTCTCCTGGAGCATCCAGTGTAGCATAAAAATAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGTCAACTCTCCTGGAGCATCCAGTGTAGCATAAAAATAAGAGA  500

seq1  GACCCTGGCTCAACAAGGTGGAAGGTGAAAACCAACTCCAGAATGTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGCTCAACAAGGTGGAAGGTGAAAACCAACTCCAGAATGTTGTC  550

seq1  CATTGATGTCACATTCATTCCATGGTATTCACATGTATACACACACACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGTCACATTCATTCCATGGTATTCACATGTATACACACACACTC  600

seq1  ATGTGCACACATAATCCCTGTCAACAACCATATTAAAACACACAGAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACACATAATCCCTGTCAACAACCATATTAAAACACACAGAAGAA  650

seq1  ACAGGTAAAATTAAACCTTAGTAGTATATTTTATTTTACTAAATATGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAAAATTAAACCTTAGTAGTATATTTTATTTTACTAAATATGTCC  700

seq1  AGATTGTTGTCACTTTTACATTTAATCAGCACAAAGATTGCCAAAGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTGTCACTTTTACATTTAATCAGCACAAAGATTGCCAAAGAGCT  750

seq1  CTTTGATATCCCTTTTTTGCAAGTAATCCGTGTGCACCTTACACTTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATATCCCTTTTTTGCAAGTAATCCGTGTGCACCTTACACTTGCAG  800

seq1  CGTGTGAGTCCATCATGCCTGCAATTAATTTCAAGGGCTCAGTAACCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGAGTCCATCATGCCTGCAATTAATTTCAAGGGCTCAGTAACCTTC  850

seq1  ATGGGGCTGCAATAGTGGCTGTATTAGGCAGTGCAATTAGAGGGAGAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTGCAATAGTGGCTGTATTAGGCAGTGCAATTAGAGGGAGAGCA  900

seq1  GACAGCAAGTGGAGCCTTGAGAGACACCTGCATTTGGGAGATAAGAGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAAGTGGAGCCTTGAGAGACACCTGCATTTGGGAGATAAGAGGAG  950

seq1  GGAAAAGAGCCAGTGGAGAAATTGACAGAGGCAGGAGGATAATCAGGATA  1000
      || ||||||||||| |||||||||||||| ||||   |||||||||||||
seq2  GG-AAAGAGCCAGT-GAGAAATTGACAGA-GCAG--AGATAATCAGGATA  995

seq1  GCACGATGTCTAAAAGTCCAAGCATCTTTCCTAGGGAGACTCAGGGAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGATGTCTAAAAGTCCAAGCATCTTTCCTAGGGAGACTCAGGGAAGA  1045

seq1  AGGTCATCA-CACACTTCATTCGGCACAAAGCATCCTTCACTCTTGCATT  1099
      | ||||||| |||||||||||||||||  ||||| |||||||||||||||
seq2  A-GTCATCACCACACTTCATTCGGCAC-TAGCAT-CTTCACTCTTGCATT  1092

seq1  TGAAAGGGCTTCCCTGGCCGTAGTGTGG-CTCTGCACTACAAAATCATCC  1148
      || || ||||  ||||||||||  |||| |||||| |||||||| |||||
seq2  TGGAAAGGCTGTCCTGGCCGTAAGGTGGCCTCTGCCCTACAAAA-CATCC  1141

seq1  ATTTGCCATGACTTTAGGAGTCT-CATGTA-TGGACCCAAAT  1188
      |||||| | ||||||||||| || |||||| |||||||||||
seq2  ATTTGCTAGGACTTTAGGAGACTCCATGTATTGGACCCAAAT  1183