BAC Information

Click to search

BAC

Clone NameB6Ng01-005A13
Chromosome4 (Build37)
Map Location 57,063,835 - 57,206,098
singlet/doubletdoublet
Overlap geneEpb4.1l4b
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik
Downstream genePtpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005A13.bB6Ng01-005A13.g
ACCDH842284DH842285
length3901,100
definitionDH842284|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A13, 5' end.DH842285|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,063,835 - 57,064,229)(57,204,986 - 57,206,098)
sequence
agggaaaacatactctttggctagggtcgaacatacttttgtaacattgt
acttcttgcttaattggtttgaagagaaaaaaactgtatcaaagtcttgg
agacagacacattacaaatgttaggagtgttcattaaggtgatttcctac
agaaacttagtttcatttgttaaagaaaacaaagactagagagaaaggtc
agtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta
cactcactgtgcacaaaaccctgggttctatttctggcacctctccccta
cctgacacatttttaaggatgtgtctgtctgtccgtctgcttgtcttctg
agtcaagaaaattgtttgatcccctttgaacaggagttgt
gaattcatctctgtacagaagaacaagtgtgttgttcattcaccctaggt
tacaatggtctccatttcatttcagaggagagaatcagactaactgaata
taaacacaatttgatgttaatttattctaagtactctgggattttgattg
tcctaaagaattctgctctgtgaataccatgttattttttttttttaatt
tgtggcaggattgtagcgaattactatttaaggaaaataaattacatgaa
tgctctaaggtggtatttttaaatagctgtttttatgtatcgaaaagaaa
gtcagcaagtttcttaatggtattataggaaaaggatactttgatgttat
aatgtatgtagatgaagctacatagatacttagcagatactggaccaatt
aaagcatttcctagttgcaagatgggtaaggacctgtacaaaggacctca
ggtttttgaaggttctttatctgcaggctcagtttatctgtctacttccc
tcccccctgtcttttacccacaaacatcttagtagtgctcaatgatgtga
gtgagaaaggcactgctcagtgccctgtatactgagaaagtggaatttgg
ttctgtactgctcaacaccaggtagccctcataggaacctgggatcgatc
tgtgcctctctttccgtctgtgtgaaataatgaaaaacaacacttggaat
ttgaggacagaattagatcacactatggaaactaatttccagcttctgga
atacataaaccaatgccactgaagaactaggaggctggcttcttttgttg
gccccaagcatatcagacaagtggaacccaccaggttttcatagagcagt
gttgtagagggaaaagcacagagcaccgatacctttattcaagctgggtt
ctgagacgctctcagtaaagccccagagaggagaggagagagtactgggt
gcatttcagtggcactaggcttgttaacagacgaccgtgtttgatagcaa
tgttaatcactgccctgtgtgcaagcactgcaagaatcttaatgtcttga
acgttttataattttcggaaacacgttgatgtgggtcacggaaatgctgc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_57063835_57064229
seq2: B6Ng01-005A13.b_46_440

seq1  GAATTCAGGGAAAACATACTCTTTGGCTAGGGTCGAACATACTTTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAAAACATACTCTTTGGCTAGGGTCGAACATACTTTTGTAA  50

seq1  CATTGTACTTCTTGCTTAATTGGTTTGAAGAGAAAAAAACTGTATCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACTTCTTGCTTAATTGGTTTGAAGAGAAAAAAACTGTATCAAAG  100

seq1  TCTTGGAGACAGACACATTACAAATGTTAGGAGTGTTCATTAAGGTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGACAGACACATTACAAATGTTAGGAGTGTTCATTAAGGTGATT  150

seq1  TCCTACAGAAACTTAGTTTCATTTGTTAAAGAAAACAAAGACTAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGAAACTTAGTTTCATTTGTTAAAGAAAACAAAGACTAGAGAGA  200

seq1  AAGGTCAGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG  250

seq1  TGTGTACACTTACTGTGCACAAAACCCTGGGTTCTATTTCTGGCACCTCT  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACACTCACTGTGCACAAAACCCTGGGTTCTATTTCTGGCACCTCT  300

seq1  CTCCTACCTGACACATTTTTAAGGATGTGTCTGTCTGTCCGTCTGCTTGT  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCTGACACATTTTTAAGGATGTGTCTGTCTGTCCGTCTGCTTGT  350

seq1  CTTCTGAGTCAAGAAGAGTGTTTGATCCCCTTTGAACAGGAGTTG  395
      ||||||||||||||| | |||||||||||||||||||||||||||
seq2  CTTCTGAGTCAAGAAAATTGTTTGATCCCCTTTGAACAGGAGTTG  395

seq1: chr4_57204986_57206098
seq2: B6Ng01-005A13.g_68_1167 (reverse)

seq1  GCAGCATTTTCGTGACCACAC-TCAACGTGTTTTCAGAAAAATAATAAAA  49
      ||||||||| ||||||| ||| ||||||||||| |   ||||| ||||||
seq2  GCAGCATTTCCGTGACC-CACATCAACGTGTTTCC--GAAAATTATAAAA  47

seq1  CAGTCTCCAAGGACATTTAGATTCTGCAAGTGCTTTGCACACAGGGCAGT  99
      |  ||    | |||||| |||||||   ||||| ||||||||||||||||
seq2  CGTTC----AAGACATTAAGATTCTTGCAGTGC-TTGCACACAGGGCAGT  92

seq1  GATAAACATTGCTATCAAACAACGGTCGTCTGTTAAACAGCCTAGTGCCA  149
      ||| |||||||||||||||| |||||||||||||||  ||||||||||||
seq2  GATTAACATTGCTATCAAAC-ACGGTCGTCTGTTAACAAGCCTAGTGCCA  141

seq1  CTGAAATGCACCCAGTACTCTCTCCTCCTCCTCTTCTTGGGGCTTTACTG  199
      |||||||||||||||||||||||||| |||||||   |||||||||||||
seq2  CTGAAATGCACCCAGTACTCTCTCCT-CTCCTCT--CTGGGGCTTTACTG  188

seq1  AGAGCGTTCTCAGAACCCAGCTTGAATAAAGGTATCGGTGCTCTGTGCTT  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCG-TCTCAGAACCCAGCTTGAATAAAGGTATCGGTGCTCTGTGCTT  237

seq1  TTCCCTCTACAACACTGCTCTATGAAAACCTGGTGGGTTCCACTTGTCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTACAACACTGCTCTATGAAAACCTGGTGGGTTCCACTTGTCTG  287

seq1  ATATGCTTGGGGCCAACAAAAGAAGCCAGCCTTCCTAGTTCTTCAGTGGC  349
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATATGCTTGGGGCCAACAAAAGAAGCCAGCC-TCCTAGTTCTTCAGTGGC  336

seq1  ATTGGTTTATGTATTCCAGAAGCTGGAAATTAGTTTCCATAGTGTGATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTATGTATTCCAGAAGCTGGAAATTAGTTTCCATAGTGTGATCT  386

seq1  AATTCTGTCCTCAAATTCCAAGTGTTGTTTTTCATTATTTCACACAGACG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTCCTCAAATTCCAAGTGTTGTTTTTCATTATTTCACACAGACG  436

seq1  GAAAGAGAGGCACAGATCGATCCCAGGTTCCTATGAGGGCTACCTGGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGCACAGATCGATCCCAGGTTCCTATGAGGGCTACCTGGTGT  486

seq1  TGAGCAGTACAGAACCAAATTCCACTTTCTCAGTATACAGGGCACTGAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTACAGAACCAAATTCCACTTTCTCAGTATACAGGGCACTGAGC  536

seq1  AGTGCCTTTCTCACTCACATCATTGAGCACTACTAAGATGTTTGTGGGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTTCTCACTCACATCATTGAGCACTACTAAGATGTTTGTGGGTA  586

seq1  AAAGACAGGGGGGAGGGAAGTAGACAGATAAACTGAGCCTGCAGATAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGGGGGGAGGGAAGTAGACAGATAAACTGAGCCTGCAGATAAAG  636

seq1  AACCTTCAAAAACCTGAGGTCCTTTGTACAGGTCCTTACCCATCTTGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCAAAAACCTGAGGTCCTTTGTACAGGTCCTTACCCATCTTGCAA  686

seq1  CTAGGAAATGCTTTAATTGGTCCAGTATCTGCTAAGTATCTATGTAGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAATGCTTTAATTGGTCCAGTATCTGCTAAGTATCTATGTAGCTT  736

seq1  CATCTACATACATTATAACATCAAAGTATCCTTTTCCTATAATACCATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATACATTATAACATCAAAGTATCCTTTTCCTATAATACCATTA  786

seq1  AGAAACTTGCTGACTTTCTTTTCGATACATAAAAACAGCTATTTAAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTGCTGACTTTCTTTTCGATACATAAAAACAGCTATTTAAAAAT  836

seq1  ACCACCTTAGAGCATTCATGTAATTTATTTTCCTTAAATAGTAATTCGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTTAGAGCATTCATGTAATTTATTTTCCTTAAATAGTAATTCGCT  886

seq1  ACAATCCTGCCACAAATTAAAAAAAAAAAATAACATGGTATTCACAGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCTGCCACAAATTAAAAAAAAAAAATAACATGGTATTCACAGAGC  936

seq1  AGAATTCTTTAGGACAATCAAAATCCCAGAGTACTTAGAATAAATTAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTTTAGGACAATCAAAATCCCAGAGTACTTAGAATAAATTAACA  986

seq1  TCAAATTGTGTTTATATTCAGTTAGTCTGATTCTCTCCTCTGAAATGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGTGTTTATATTCAGTTAGTCTGATTCTCTCCTCTGAAATGAAA  1036

seq1  TGGAGACCATTGTAACCTAGGGTGAATGAACAACACACTTGTTCTTCTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACCATTGTAACCTAGGGTGAATGAACAACACACTTGTTCTTCTGT  1086

seq1  ACAGAGATGAATTC  1113
      ||||||||||||||
seq2  ACAGAGATGAATTC  1100