BAC Information

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BAC

Clone NameB6Ng01-005A15
Chromosome4 (Build37)
Map Location 139,172,243 - 139,328,505
singlet/doubletdoublet
Overlap geneC79267, Aldh4a1, Tas1r2, Pax7
Upstream gene4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1
Downstream geneGm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005A15.bB6Ng01-005A15.g
ACCDH842288DH842289
length911927
definitionDH842288|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A15, 5' end.DH842289|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,327,594 - 139,328,505)(139,172,243 - 139,173,181)
sequence
gaattcatttctcgggcttagcgggttgtagggacacggggctttaaccc
cagccagagtctcctctgcacccccgcccgcctagccttgcttttgcctc
ccttcccaggtgactctcctgccatgggcttccttccctctgcctccgtg
gggtttctaggggtctccgtgctcttctttccttgggaagcctctctctc
aggcccccataagtgggaggtgggctgcatcagaagaaacaacaaggtgg
atcagaacatcaagttctgattctgctgcttatcctgaggtcgtgtgact
cccagggcagcttacttagcctctctgggtttcatttctcttacctgaaa
ggagggctatcatctctgcttctcagaggcactgtgaggactaatgggag
atttgagcaaagtacctggcacacagtaggtgcttggtagatggtcactc
tctgcaccctttcacctacctaggcttcacctctccttcactccttccgc
catccttccctgctctcccttccattttggttggctgggaaaatgctgtg
ccagtttcttctttagagcaatgtagtgcgttcagctgactcaacctgga
gagagctgctgtgcatgaaactctcctatctgtggaaagccctggaagct
gcctactgtcctcctagaaggtgagctgcaagggaaagggtggggacgac
tcagactctgcctctgttcctaggagcagggtaaagccagtggagtcatc
cccaccctccttccctgccttgtttctcaccatgactggggtcaagggtc
agttttcaaacaggaccagagtctgttgctggcttttcttggacccgtag
ctcagtacctttttttttttttttttaaagcatcaactggttttccccat
acccagtaatt
gaattcaccgtcccccagctccgtggccagcagtgactcaggaagtacag
acgaaatccaggaagacctggagcgggaggcggatgtggagcccatggtc
agctgatgacggaggcccgacgctcctggtggtcttggtgatggggtcca
gcctcctctccccactgagccgtgtgggctccactcctcgacacagactt
ctgtcctcccttctccggaggcccagcgggaccgctgcttccttccttcc
tccaccaccgacccatggaatggtgctgtcgatttttctattgtccccac
acacaccacaaacgcagacttttgtgcgtcgatgcagtgcaactgtgcct
tctcccttaagctgagccactttgagctccaaagaattcttcctagcagg
tgtttttttaaatataaaactctaaggtgagggtggggcctggaggcgtg
gtagcttttggttttctccctcccacctgctcctctgattggacatgagc
tttgctccctccctctgtcccaagatgacttgcggtggtctgctttctca
aggaagtagactgtgttacctccagagctgggcgaggaggagtcgtcaat
actttctcacccagggatagagtggtggacggaagtggagggagggaaga
ccaatttttttcttctttcttttggatctagtggcgatgtatcggggaaa
ggcactgtgggggaaggaagaacctcactgtgtttaaactatgcaaaaac
aaaaacaaaaacaaacaacaaaaaaacctaaaagcagcttgccttatatc
attggggatgcagccctctctcagacttctgggaactgggagagaggcca
aggttggcatgatccctcatatctctgaggttcagagggtctttggggtg
gtccagtcagatgctggtaagctgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_139327594_139328505
seq2: B6Ng01-005A15.b_49_959 (reverse)

seq1  AATTACTGGGTATGGGGAAAACCAGTTGATGCTTT-AAAAAAAAAAAAAA  49
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATTACTGGGTATGGGGAAAACCAGTTGATGCTTTAAAAAAAAAAAAAAA  50

seq1  AAGGTACTGAGCTACGGGTCCAAGAAAAGCCAGCCACAGACTCCTGGTCC  99
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  AAGGTACTGAGCTACGGGTCCAAGAAAAGCCAGCAACAGACT-CTGGTCC  99

seq1  TGTTTGAAAACTGACCCTTGACCCCAGTCATGGTGAGAAACAAGGCAGGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAAACTGACCCTTGACCCCAGTCATGGTGAGAAACAAGGCAGGG  149

seq1  AAGGAGGGTGGGGATGACTCCACTGGCTTTACCCTGCTCCTAGGAACAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGTGGGGATGACTCCACTGGCTTTACCCTGCTCCTAGGAACAGA  199

seq1  GGCAGAGTCCTGAGTCGTCCCCACCCTTTCCCTTGCAGCTCACCTTCTAG  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGT-CTGAGTCGTCCCCACCCTTTCCCTTGCAGCTCACCTTCTAG  248

seq1  GAGGACAGTAGGCAGCTTCCAGGGCTTTCCACAGATAGGAGAGTTTCATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGTAGGCAGCTTCCAGGGCTTTCCACAGATAGGAGAGTTTCATG  298

seq1  CACAGCAGCTCTCTCCAGGTTGAGTCAGCTGAACGCACTACATTGCTCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCTCTCTCCAGGTTGAGTCAGCTGAACGCACTACATTGCTCTA  348

seq1  AAGAAGAAACTGGCACAGCATTTTCCCAGCCAACCAAAATGGAAGGGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAACTGGCACAGCATTTTCCCAGCCAACCAAAATGGAAGGGAGA  398

seq1  GCAGGGAAGGATGGCGGAAGGAGTGAAGGAGAGGTGAAGCCTAGGTAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAGGATGGCGGAAGGAGTGAAGGAGAGGTGAAGCCTAGGTAGGT  448

seq1  GAAAGGGTGCAGAGAGTGACCATCTACCAAGCACCTACTGTGTGCCAGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTGCAGAGAGTGACCATCTACCAAGCACCTACTGTGTGCCAGGT  498

seq1  ACTTTGCTCAAATCTCCCATTAGTCCTCACAGTGCCTCTGAGAAGCAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTCAAATCTCCCATTAGTCCTCACAGTGCCTCTGAGAAGCAGAG  548

seq1  ATGATAGCCCTCCTTTCAGGTAAGAGAAATGAAACCCAGAGAGGCTAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCCCTCCTTTCAGGTAAGAGAAATGAAACCCAGAGAGGCTAAGT  598

seq1  AAGCTGCCCTGGGAGTCACACGACCTCAGGATAAGCAGCAGAATCAGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCCCTGGGAGTCACACGACCTCAGGATAAGCAGCAGAATCAGAAC  648

seq1  TTGATGTTCTGATCCACCTTGTTGTTTCTTCTGATGCAGCCCACCTCCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTCTGATCCACCTTGTTGTTTCTTCTGATGCAGCCCACCTCCCA  698

seq1  CTTATGGGGGCCTGAGAGAGAGGCTTCCCAAGGAAAGAAGAGCACGGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGGGGCCTGAGAGAGAGGCTTCCCAAGGAAAGAAGAGCACGGAGA  748

seq1  CCCCTAGAAACCCCACGGAGGCAGAGGGAAGGAAGCCCATGGCAGGAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGAAACCCCACGGAGGCAGAGGGAAGGAAGCCCATGGCAGGAGAG  798

seq1  TCACCTGGGAAGGGAGGCAAAAGCAAGGCTAGGCGGGCGGGGGTGCAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGGAAGGGAGGCAAAAGCAAGGCTAGGCGGGCGGGGGTGCAGAG  848

seq1  GAGACTCTGGCTGGGGTTAAAGCCCCGTGTCCCTACAACCCGCTAAGCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTGGCTGGGGTTAAAGCCCCGTGTCCCTACAACCCGCTAAGCCC  898

seq1  GAGAAATGAATTC  912
      |||||||||||||
seq2  GAGAAATGAATTC  911

seq1: chr4_139172243_139173181
seq2: B6Ng01-005A15.g_67_993

seq1  GAATTCACCGTCCCCCAGCTCCGTGGCCAGCAGTGACTCAGGAAGTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGTCCCCCAGCTCCGTGGCCAGCAGTGACTCAGGAAGTACAG  50

seq1  ACGAAATCCAGGAAGACCTGGAGCGGGAGGCGGATGTGGAGCCCATGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAATCCAGGAAGACCTGGAGCGGGAGGCGGATGTGGAGCCCATGGTC  100

seq1  AGCTGATGACGGAGGCCCGACGCTCCTGGTGGTCTTGGTGATGGGGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGACGGAGGCCCGACGCTCCTGGTGGTCTTGGTGATGGGGTCCA  150

seq1  GCCTCCTCTCCCCACTGAGCCGTGTGGGCTCCACTCCTCGACACAGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCTCCCCACTGAGCCGTGTGGGCTCCACTCCTCGACACAGACTT  200

seq1  CTGTCCTCCCTTCTCCGGAGGCCCAGCGGGACCGCTGCTTCCTTCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCCCTTCTCCGGAGGCCCAGCGGGACCGCTGCTTCCTTCCTTCC  250

seq1  TCCACCACCGACCCATGGAATGGTGCTGTCGATTTTTCTATTGTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACCGACCCATGGAATGGTGCTGTCGATTTTTCTATTGTCCCCAC  300

seq1  ACACACCACAAACGCAGACTTTTGTGCGTCGATGCAGTGCAACTGTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCACAAACGCAGACTTTTGTGCGTCGATGCAGTGCAACTGTGCCT  350

seq1  TCTCCCTTAAGCTGAGCCACTTTGAGCTCCAAAGAATTCTTCCTAGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTAAGCTGAGCCACTTTGAGCTCCAAAGAATTCTTCCTAGCAGG  400

seq1  TGTTTTTTTAAATATAAAACTCTAAGGTGAGGGTGGGGCCTGGAGGCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTAAATATAAAACTCTAAGGTGAGGGTGGGGCCTGGAGGCGTG  450

seq1  GTAGCTTTTGGTTTTCTCCCTCCCACCTGCTCCTCTGATTGGACATGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTTGGTTTTCTCCCTCCCACCTGCTCCTCTGATTGGACATGAGC  500

seq1  TTTGCTCCCTCCCTCTGTCCCAAGATGACTTGCGGTGGTCTGCTTTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCCTCCCTCTGTCCCAAGATGACTTGCGGTGGTCTGCTTTCTCA  550

seq1  AGGAAGTAGACTGTGTTACCTCCAGAGCTGGGCGAGGAGGAGTCGTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAGACTGTGTTACCTCCAGAGCTGGGCGAGGAGGAGTCGTCAAT  600

seq1  ACTTTCTCACCCAGGGATAGAGTGGTGGACGGAAGTGGAGGGAGGGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCACCCAGGGATAGAGTGGTGGACGGAAGTGGAGGGAGGGAAGA  650

seq1  CCAATTTTTTTCTTC-TTCTTTTGGATCTAGTGGCGATGTATCGGGGAAA  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCAATTTTTTTCTTCTTTCTTTTGGATCTAGTGGCGATGTATCGGGGAAA  700

seq1  GGCACTGTGGGGGAAGGAAGAACCTCACTGTGTTTAAACTATGCAAAAAA  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCACTGTGGGGGAAGGAAGAACCTCACTGTGTTTAAACTATGC-AAAAA  749

seq1  CAAAAACAAAAAACAAACAAACAAAAAAACCTAAAAGCAGCTTGCCTTAT  799
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  CAAAAAC-AAAAACAAAC-AACAAAAAAACCTAAAAGCAGCTTGCCTTAT  797

seq1  ATCATTGGGGAAGGCAGGCCCTCTCTCAGACTTCTGGGAACTGGGAGAGA  849
      |||||||||| | ||| |||||||||||||||||||||||||||||||||
seq2  ATCATTGGGG-ATGCA-GCCCTCTCTCAGACTTCTGGGAACTGGGAGAGA  845

seq1  GGCCAAGGTTGGCATGAGTCCCTCATAGCCTCTGAGGTTCAGAGGTGGCT  899
      ||||||||||||||||| |||||||||  |||||||||||||||| | ||
seq2  GGCCAAGGTTGGCATGA-TCCCTCATA-TCTCTGAGGTTCAGAGG-GTCT  892

seq1  TTGGGGGTGGTCCCAGTCAGATTGCTGGTAAGGCCTGCCT  939
      || |||||||| ||||||||| ||||||||||  ||||||
seq2  TT-GGGGTGGT-CCAGTCAGA-TGCTGGTAAG--CTGCCT  927