BAC Information

Click to search

BAC

Clone NameB6Ng01-005A18
Chromosome4 (Build37)
Map Location 91,686,604 - 91,687,664
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664840, LOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik
Downstream geneLOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005A18.bB6Ng01-005A18.g
ACCDH842294DH842295
length1,1891,044
definitionDH842294|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A18, 5' end.DH842295|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcacagatataggaagaacaattctctacttctcctgaaataa
caaggaaacctgggatagtgaaaacaattctcaaaaataaaaattgctgg
aggaatcacaatccctgacctcaagctgtactacagagcaatggtgatta
aaaaacaaaacaaacaaacaaacaaacaaacaaacaaaaaagctgcatgg
tattggtacagagacatgcaggtagataaatgtatagaatcgaagaacca
ggaataaacccacacacccatggacacttgatttctggcaaagaaacaaa
agcatccagtggaaaaaagacagtattttcaacaaatggtgctggttcaa
ctggtgatcagcatgtagaagaatataaatcaatccatgcttatctcctt
gtacaaacctcaagtccaagtggatcaaggacctccccataaaaccagat
acactgaatctaataaaagagaaggtgggaaagagcctagaacacattgg
cacaggggaaagtttcccgaaaagaaaaccaaggactcaggctctaagat
caaaaattgacaaatagctcatgaaactgaaaggcttctgtaaggcaaag
aacactgttactaagacaaaacagcaacctacagattgggaaaggatctt
taccaaccatacatctgatatagggctaatatccaaaatatacaaagaac
tcaagaagatagactccataaaaccaatttaatactggctacagagctaa
acaacaaattctcaactgaagaatggcctagaaacacctaaagaaatgtt
caattttcttagtaatcattccctgattttgattccccatgcaatcaaaa
tgatcctaagattccaccttataccaatcagaatggctaagattaaaacc
tcatgtgtcagcagatactgggaagatgtgagaaacaaacactcctcatt
gctgataggatacagctgtacactacttgaaatcatctgtgatcctcaga
atttgcatagctgtactgagactagctatacactctagactatacccaaa
gatgctcaccatacagatacgtgatcatatggtcctagcagctattgtat
acagacatggaacgcttgagtttcctcatggaaaacgatcgaactggcat
ttacatggattcacttcggttaaatatcgacctccttac
gaattctttaggaaaaaaattaaggcatctctagaaagaaaaggtcaaca
ataagtctgctgtgatgatttatgagaaagtttaggttgaatggtatagt
gtgtcatttttatagatattgacctaacttaaaaaaatgtagtactgtat
gtaagcagcacaattttgtgaagattgaattatgcataggtaaagatgag
agttctaccttgtttgtgctgtaaaagtattaaaataaaaaacaccagga
tttgggggctatcacatgataaaaccatgtgttaaactgcgtactgcctg
aaccaaagttgccttggaaaatataaatttcagtttatcaaattgcagtc
agataactgattagaaaaatattcaccaaagagcaaatgaggagttaaat
gcttgctgagccagcatgaggattgagtttgaaacttagcacccacataa
aaggcagagtattacaatgtatccccaaaacttggagaagtggggttgca
gagaaagtgggatctaggggcttactgtcaagtggcaagttgtagtgtaa
gagacagttgtgtctcaaaaactaaggtagagagttattgacaaaagtcc
tgatagtgagtgactcacgatctccatacaggtatacatgtgtgagcaca
tccttacatacaagtatatgtagtgtatacacacacacacacacacacac
acacacacacacagagagagagagagagagagagagagagagagagagag
agagagagagagagagaaatgaatcacaatgaataaaataaattgaattc
atgccatcacagaagttagcaccacacaaaatattatttcaccttgagaa
taagtatatatatacttgtattattttgtgctttcattaatatgcacatt
actgagctacactaaaaaagcatttcttgctatgagagactcacctgctt
tctatgagatatatattagctaaattgtaatatctctaaatgtgacgatg
tttcacgtgatgattgatgctttatctttatgcttattataatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91686604_91687664
seq2: B6Ng01-005A18.g_68_1111

seq1  GAATTCTTTAGGAAAAAAATTAAGGCATCTCTAGAAAGAAAAGGTCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGGAAAAAAATTAAGGCATCTCTAGAAAGAAAAGGTCAACA  50

seq1  ATAAGTCTGCTGTGATGATTTATGAGAAAGTTTAGGTTGAATGGTATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCTGCTGTGATGATTTATGAGAAAGTTTAGGTTGAATGGTATAGT  100

seq1  GTGTCATTTTTATAGATATTGACCTAACTTAAAAAAATGTAGTACTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTTTTATAGATATTGACCTAACTTAAAAAAATGTAGTACTGTAT  150

seq1  GTAAGCAGCACAATTTTGTGAAGATTGAATTATGCATAGGTAAAGATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAGCACAATTTTGTGAAGATTGAATTATGCATAGGTAAAGATGAG  200

seq1  AGTTCTACCTTGTTTGTGCTGTAAAAGTATTAAAATAAAAAACACCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTACCTTGTTTGTGCTGTAAAAGTATTAAAATAAAAAACACCAGGA  250

seq1  TTTGGGGGCTATCACATGATAAAACCATGTGTTAAACTGCGTACTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGCTATCACATGATAAAACCATGTGTTAAACTGCGTACTGCCTG  300

seq1  AACCAAAGTTGCCTTGGAAAATATAAATTTCAGTTTATCAAATTGCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGTTGCCTTGGAAAATATAAATTTCAGTTTATCAAATTGCAGTC  350

seq1  AGATAACTGATTAGAAAAATATTCACCAAAGAGCAAATGAGGAGTTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTGATTAGAAAAATATTCACCAAAGAGCAAATGAGGAGTTAAAT  400

seq1  GCTTGCTGAGCCAGCATGAGGATTGAGTTTGAAACTTAGCACCCACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGAGCCAGCATGAGGATTGAGTTTGAAACTTAGCACCCACATAA  450

seq1  AAGGCAGAGTATTACAATGTATCCCCAAAACTTGGAGAAGTGGGGTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGTATTACAATGTATCCCCAAAACTTGGAGAAGTGGGGTTGCA  500

seq1  GAGAAAGTGGGATCTAGGGGCTTACTGTCAAGTGGCAAGTTGTAGTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTGGGATCTAGGGGCTTACTGTCAAGTGGCAAGTTGTAGTGTAA  550

seq1  GAGACAGTTGTGTCTCAAAAACTAAGGTAGAGAGTTATTGACAAAAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTTGTGTCTCAAAAACTAAGGTAGAGAGTTATTGACAAAAGTCC  600

seq1  TGATAGTGAGTGACTCACGATCTCCATACAGGTATACATGTGTGAGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGAGTGACTCACGATCTCCATACAGGTATACATGTGTGAGCACA  650

seq1  TCCTTACATACAAGTATATGTAGTGTATACACACACACACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACATACAAGTATATGTAGTGTATACACACACACACACACACACAC  700

seq1  ACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  750

seq1  AGAGAGAGAGAGAGAGAAATGAATAACAAATGAATAAAATAAATTGAATT  800
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAAATGAATCAC-AATGAATAAAATAAATTGAATT  799

seq1  CATGCCATCACAGAAGTTAGCACCACACAAAATATTATTTCACCTTGAGG  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGCCATCACAGAAGTTAGCACCACACAAAATATTATTTCACCTTGA-G  848

seq1  ATTAAGTATATATATACTTGTATTTATTTTGTGCTTTCATTTAATATGCC  900
      | |||||||||||||||||||| |||||||||||||||| |||||||| |
seq2  AATAAGTATATATATACTTGTA-TTATTTTGTGCTTTCA-TTAATATG-C  895

seq1  ACATTACTGAGCTACACTAAAAAACAGCATTTCTTGCTATGAGAGACTCA  950
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  ACATTACTGAGCTACACTAAAAA--AGCATTTCTTGCTATGAGAGACTCA  943

seq1  CCTGC-TTCTATGAAGATATATATTTAGCTAAATTGTAATTATCTCCTAA  999
      ||||| ||||||| ||||||||| ||||||||||||||| ||||||   |
seq2  CCTGCTTTCTATG-AGATATATA-TTAGCTAAATTGTAA-TATCTC--TA  988

seq1  AATGTGACGATGTTTCTACCCTGATGATTTTGATGCTTTATCTTTATGCT  1049
      ||||||||||||||||   | ||||||  |||||||||||||||||||| 
seq2  AATGTGACGATGTTTC--ACGTGATGA--TTGATGCTTTATCTTTATGC-  1033

seq1  TTATTATCAATT  1061
      ||||||| ||||
seq2  TTATTAT-AATT  1044