BAC Information

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BAC

Clone NameB6Ng01-005D15
Chromosome4 (Build37)
Map Location 125,051,794 - 125,251,282
singlet/doubletdoublet
Overlap geneLOC100039298, Grik3, Ftl2
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
Downstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005D15.bB6Ng01-005D15.g
ACCDH842419DH842420
length1,104224
definitionDH842419|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D15, 5' end.DH842420|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,051,794 - 125,052,901)(125,251,059 - 125,251,282)
sequence
gaattctgcaacaagatatgcttcatgcccgggtcatgattctagcaaga
tctgtcacccacattagtggctaatgacatgatttctgactgtttcctct
caactgaagcagggcctgcctcctctctcttatcattttgctcccgtgat
aatcccacgatccccacacccgccaatgttatctcccgaagacagcacaa
atcaaaccagatcacaccactctctggcttaagtgccatcagttcacctt
cctccaggctcccaagcagaatcaaaggcagattccatgttgtagcttga
caatcccctctcaggcatgtctcctatagcaccacagctctgtgggctct
ctcttttacacctgtctctctctgccctctccccattactcgagtttcca
cttaaatattatctctgaggggtcttgcctatctgcccctccatatctcc
attgtgtagagagatggaagggcactacattatagtgtccttatagcctg
atcgcatgctagaagcatctttctcattctacccatttcctgggtcttcc
ccactagaatataaatgcaaacaaggcatgggacttctctgttttatagc
tgtcttatagtcatagctccagaatctagtatggggtctgatgcctggta
gttgctcatacagatttcttggcaaatggatcagagaagtgtttattagc
atcatggctggtgagcccttctcttaaagcaagttgccacagaatttgac
ctctggctgatcagctaaatttgtcagcctttctttttgacctatagtcc
cttccacagagttcaaggctctccataagacaaaagaagtgaccatggtg
gtaggtggcaaagaacctctgattgtgctattgtctctggatggtgacat
ctctgagatcttgggggttagcttgtccctgcagtgtcacctgggctatc
cttattagtacagaacatctgagatttgcctcttatggatcagttcattt
acattgtttggatgatatgaaactctaagccagagtctgatattgataag
cctttgaggaaacctatgtcatatcatggagggacactggctaaggacct
tggc
tctctctccaaacctcccgtgaattccaggagagcctaagctgcaagctg
caaggagctaagagaaaagctccctcgtccacagttggagaggactagag
gagtcggaacccaggctcaccccaccccgtgtgtgcccacctcccacaag
ggctgagatagcgccttgagactgataatcttgaacaatgggacgtctct
acagatggggggtggggtggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_125051794_125052901
seq2: B6Ng01-005D15.b_46_1149

seq1  GAATTCTGCAACAAGATATGCTTCATGCCCGGGTCATGATTCTAGCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAACAAGATATGCTTCATGCCCGGGTCATGATTCTAGCAAGA  50

seq1  TCTGTCACCCACATTAGTGGCTAATGACATGATTTCTGACTGTTTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACCCACATTAGTGGCTAATGACATGATTTCTGACTGTTTCCTCT  100

seq1  CAACTGAAGCAGGGCCTGCCTCCTCTCTCTTATCATTTTGCTCCCGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAAGCAGGGCCTGCCTCCTCTCTCTTATCATTTTGCTCCCGTGAT  150

seq1  AATCCCACGATCCCCACACCCGCCAATGTTATCTCCCGAAGACAGCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACGATCCCCACACCCGCCAATGTTATCTCCCGAAGACAGCACAA  200

seq1  ATCAAACCAGATCACACCACTCTCTGGCTTAAGTGCCATCAGTTCACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACCAGATCACACCACTCTCTGGCTTAAGTGCCATCAGTTCACCTT  250

seq1  CCTCCAGGCTCCCAAGCAGAATCAAAGGCAGATTCCATGTTGTAGCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGCTCCCAAGCAGAATCAAAGGCAGATTCCATGTTGTAGCTTGA  300

seq1  CAATCCCCTCTCAGGCATGTCTCCTATAGCACCACAGCTCTGTGGGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCTCTCAGGCATGTCTCCTATAGCACCACAGCTCTGTGGGCTCT  350

seq1  CTCTTTTACACCTGTCTCTCTCTGCCCTCTCCCCATTACTCGAGTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTACACCTGTCTCTCTCTGCCCTCTCCCCATTACTCGAGTTTCCA  400

seq1  CTTAAATATTATCTCTGAGGGGTCTTGCCTATCTGCCCCTCCATATCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATTATCTCTGAGGGGTCTTGCCTATCTGCCCCTCCATATCTCC  450

seq1  ATTGTGTAGAGAGATGGAAGGGCACTACATTATAGTGTCCTTATAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTAGAGAGATGGAAGGGCACTACATTATAGTGTCCTTATAGCCTG  500

seq1  ATCGCATGCTAGAAGCATCTTTCTCATTCTACCCATTTCCTGGGTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCATGCTAGAAGCATCTTTCTCATTCTACCCATTTCCTGGGTCTTCC  550

seq1  CCACTAGAATATAAATGCAAACAAGGCATGGGACTTCTCTGTTTTATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGAATATAAATGCAAACAAGGCATGGGACTTCTCTGTTTTATAGC  600

seq1  TGTCTTATAGTCATAGCTCCAGAATCTAGTATGGGGTCTGATGCCTGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATAGTCATAGCTCCAGAATCTAGTATGGGGTCTGATGCCTGGTA  650

seq1  GTTGCTCATACAGATTTCTTGGCAAATGGATCAGAGAAGTGTTTATTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCATACAGATTTCTTGGCAAATGGATCAGAGAAGTGTTTATTAGC  700

seq1  ATCATGGCTGGTGAGCCCTTCTCTTAAAGCAAGTTGCCACAGAATTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGCTGGTGAGCCCTTCTCTTAAAGCAAGTTGCCACAGAATTTGAC  750

seq1  CTCTGGCTGATCAGCT-AATTTGTCAGCCTTTCTTTTTGACCTATAGTCC  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTGGCTGATCAGCTAAATTTGTCAGCCTTTCTTTTTGACCTATAGTCC  800

seq1  CTTCCACAGAGTTCAAGGCTCCCCATAAGACAAAAGAAAGTGACCATGGT  849
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  CTTCCACAGAGTTCAAGGCTCTCCATAAGACAAAAG-AAGTGACCATGGT  849

seq1  GGTAGGTGGCAAAGAACCTCTGATTGTAGCTATTGTCTCTGGAATGTGAC  899
      ||||||||||||||||||||||||||| |||||||||||||||  |||||
seq2  GGTAGGTGGCAAAGAACCTCTGATTGT-GCTATTGTCTCTGGATGGTGAC  898

seq1  ATCTCTGAGATC-TGGGGGTTAGCTTGTCCCTGCAGTGTCACCTGGGCTA  948
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAGATCTTGGGGGTTAGCTTGTCCCTGCAGTGTCACCTGGGCTA  948

seq1  TCCTTATTAGTACAGAAACATCTGGAAGATTTTCCTCTTATGGATCAGTT  998
      ||||||||||||||| ||||||||  |||||| |||||||||||||||||
seq2  TCCTTATTAGTACAG-AACATCTG--AGATTTGCCTCTTATGGATCAGTT  995

seq1  CATATACAGTGTTTGGAATGAATATGAAACTCAAAGCCAGAGTCTGAGAA  1048
      ||| |||| ||||||| ||| ||||||||||| |||||||||||||| | 
seq2  CATTTACATTGTTTGG-ATG-ATATGAAACTCTAAGCCAGAGTCTGATAT  1043

seq1  TGAGAAGCTTGTGAGGAAACC-AAGTCAGAGCAGTGAGGGACACTGCCTA  1097
      ||| |||| | |||||||||| | |||| | ||  ||||||||||| |||
seq2  TGATAAGCCTTTGAGGAAACCTATGTCATATCATGGAGGGACACTGGCTA  1093

seq1  AGGACCTTGGC  1108
      |||||||||||
seq2  AGGACCTTGGC  1104

seq1: chr4_125251059_125251282
seq2: B6Ng01-005D15.g_75_298 (reverse)

seq1  CTCCCCACCCCACCCCCCATCTGTAGAGACGTCCCATTGTTCAAGATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACCCCACCCCCCATCTGTAGAGACGTCCCATTGTTCAAGATTAT  50

seq1  CAGTCTCAAGGCGCTATCTCAGCCCTTGTGGGAGGTGGGCACACACGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCAAGGCGCTATCTCAGCCCTTGTGGGAGGTGGGCACACACGGGG  100

seq1  TGGGGTGAGCCTGGGTTCCGACTCCTCTAGTCCTCTCCAACTGTGGACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGAGCCTGGGTTCCGACTCCTCTAGTCCTCTCCAACTGTGGACGA  150

seq1  GGGAGCTTTTCTCTTAGCTCCTTGCAGCTTGCAGCTTAGGCTCTCCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTTTTCTCTTAGCTCCTTGCAGCTTGCAGCTTAGGCTCTCCTGGA  200

seq1  ATTCACGGGAGGTTTGGAGAGAGA  224
      ||||||||||||||||||||||||
seq2  ATTCACGGGAGGTTTGGAGAGAGA  224