BAC Information

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BAC

Clone NameB6Ng01-005G06
Chromosome4 (Build37)
Map Location 46,785,511 - 46,918,831
singlet/doubletdoublet
Overlap geneGabbr2
Upstream geneLOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
Downstream geneAnks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005G06.bB6Ng01-005G06.g
ACCDH842539DH842540
length636333
definitionDH842539|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G06, 5' end.DH842540|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,785,511 - 46,786,146)(46,918,499 - 46,918,831)
sequence
gaattctgttgagaaagaagagggaggtgggtgttggggagggataatga
gattcacaatctcatgagcaaatgggtcttcggagcctttctcactactc
ccacaggggctggcaggagccaggcttggagtgtcacatggagagtgtgc
aagtcacctctgcatgagcacatacaggctggcgacacacatcaggcctc
aaagcctttcatcatgtcatctgtaattatgtcagctgttctcctcagag
cctaggagacctctctcctgctcagcatcctggactaatgtaccttgaca
tgtgcaccaaggggttgtcctagcctcaattaagggactgtggggagaga
gtgtggagtttctctgagaggctttcgcccaggtgctttcctgagttttc
cacagcattgggttatcaatgacgcttcattatttgcttaaaaatttgtc
acacacacacacacacacacatacacacacacacacacacacacacacac
agagagagagagagagagagagagagagagatagagagagagatagagat
ttactctataggcacagctggtcagaaccgtgctggtgttgaccaggctg
cctcaggctctcagagatctatctgtttctacttcc
caacctacctcctcctggctggggacttcggacttagctcacctggaagc
attattcctgggagagatgaggtgccctgttatgtaggaaaactacccac
attgtatctcaggaaacttgttcctgccccgcttctgtggtcacttgaaa
cacagtaagctttgggttctgtgggctgtggagagggaacattttgacaa
gtgagatgaagacgtgtccaggggtgggagaaggggccaaaatgctaagg
taggaatggatgggaaactcctggtattcctacagggctggtaggtggtc
actgagttgggaggggctgggaggaggaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_46785511_46786146
seq2: B6Ng01-005G06.b_43_678

seq1  GAATTCTGTTGAGAAAGAAGAGGGAGGTGGGTGTTGGGGAGGGATAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGAGAAAGAAGAGGGAGGTGGGTGTTGGGGAGGGATAATGA  50

seq1  GATTCACAATCTCATGAGCAAATGGGTCTTCGGAGCCTTTCTCACTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACAATCTCATGAGCAAATGGGTCTTCGGAGCCTTTCTCACTACTC  100

seq1  CCACAGGGGCTGGCAGGAGCCAGGCTTGGAGTGTCACATGGAGAGTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGGCTGGCAGGAGCCAGGCTTGGAGTGTCACATGGAGAGTGTGC  150

seq1  AAGTCACCTCTGCATGAGCACATACAGGCTGGCGACACACATCAGGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACCTCTGCATGAGCACATACAGGCTGGCGACACACATCAGGCCTC  200

seq1  AAAGCCTTTCATCATGTCATCTGTAATTATGTCAGCTGTTCTCCTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTTCATCATGTCATCTGTAATTATGTCAGCTGTTCTCCTCAGAG  250

seq1  CCTAGGAGACCTCTCTCCTGCTCAGCATCCTGGACTAATGTACCTTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAGACCTCTCTCCTGCTCAGCATCCTGGACTAATGTACCTTGACA  300

seq1  TGTGCACCAAGGGGTTGTCCTAGCCTCAATTAAGGGACTGTGGGGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCAAGGGGTTGTCCTAGCCTCAATTAAGGGACTGTGGGGAGAGA  350

seq1  GTGTGGAGTTTCTCTGAGAGGCTTTCGCCCAGGTGCTTTCCTGAGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGTTTCTCTGAGAGGCTTTCGCCCAGGTGCTTTCCTGAGTTTTC  400

seq1  CACAGCAGTGGGTTATCAATGACGCTTCATTATTTGCTTAAAAATTTGTC  450
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATTGGGTTATCAATGACGCTTCATTATTTGCTTAAAAATTTGTC  450

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  500
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACATACACACACACACACACACACACACACAC  500

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAT  550
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGATAGAGAT  550

seq1  CTTACTCTATAGGCACAGCTGGCCAGAACCGTGCT-GTGTAGACCAGGCT  599
       ||||||||||||||||||||| |||||||||||| |||| |||||||||
seq2  -TTACTCTATAGGCACAGCTGGTCAGAACCGTGCTGGTGTTGACCAGGCT  599

seq1  GCCTCAGGCTCACAGAGATCTATCTGTTTCTACCTCC  636
      ||||||||||| ||||||||||||||||||||| |||
seq2  GCCTCAGGCTCTCAGAGATCTATCTGTTTCTACTTCC  636

seq1: chr4_46918499_46918831
seq2: B6Ng01-005G06.g_76_408 (reverse)

seq1  TCCCTTCCTCCTCCCAGCCCCTCCCAACTCAGTGACCACCTACCAGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCTCCTCCCAGCCCCTCCCAACTCAGTGACCACCTACCAGCCCT  50

seq1  GTAGGAATACCAGGAGTTTCCCATCCATTCCTACCTTAGCATTTTGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATACCAGGAGTTTCCCATCCATTCCTACCTTAGCATTTTGGCCC  100

seq1  CTTCTCCCACCCCTGGACACGTCTTCATCTCACTTGTCAAAATGTTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCACCCCTGGACACGTCTTCATCTCACTTGTCAAAATGTTCCCT  150

seq1  CTCCACAGCCCACAGAACCCAAAGCTTACTGTGTTTCAAGTGACCACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGCCCACAGAACCCAAAGCTTACTGTGTTTCAAGTGACCACAGA  200

seq1  AGCGGGGCAGGAACAAGTTTCCTGAGATACAATGTGGGTAGTTTTCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGGCAGGAACAAGTTTCCTGAGATACAATGTGGGTAGTTTTCCTAC  250

seq1  ATAACAGGGCACCTCATCTCTCCCAGGAATAATGCTTCCAGGTGAGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGGGCACCTCATCTCTCCCAGGAATAATGCTTCCAGGTGAGCTAA  300

seq1  GTCCGAAGTCCCCAGCCAGGAGGAGGTAGGTTG  333
      |||||||||||||||||||||||||||||||||
seq2  GTCCGAAGTCCCCAGCCAGGAGGAGGTAGGTTG  333