BAC Information

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BAC

Clone NameB6Ng01-005I20
Chromosome4 (Build37)
Map Location 75,186,016 - 75,293,809
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
Downstream geneLOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005I20.bB6Ng01-005I20.g
ACCDH842658DH842659
length1,112416
definitionDH842658|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I20, 5' end.DH842659|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,292,695 - 75,293,809)(75,186,016 - 75,186,437)
sequence
gaattctgtcaaaattgggaactatcttggaggaaatgctgtagataaac
atcattacttctccagtcccaccctgtaacttaagcctgttaattttaag
ttctagtcaaaaactcaggtaaaaagatgattttcatctttcaagataga
aaagagaggtatactcttgtatatttttatattaacgtttttattaggta
ttttcctcatttacatttccaatgctatcccaaaagtcccccataccctc
cccccactcacctacccacccacccccacttcttggccctggtgttcccc
tgtactgaggcatataaagtttgcacgaccaatgagcctctctttccact
gatggctgactaggccatcttctgatacatatgcaactagagacacgagc
ttccggggggtactgttaaaatggatacatataaccccaaagtatgtacg
ttttttgagacagggtttctctgtgtagccctggctgttctgaaatttac
tctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctt
ccaagtgctgggattaaaggtgtgtgccaccactgcctggctccaaagta
catttaaatgccatagtatgatatgaatgattcaattcataagtgcattg
tgtaatactggaatcaggttcgatgtatataactcttcaaacatccattt
caatatagtaaaaactttccactagctttttgaaatctatgtcaaatatc
cttcaactcatttgtcaaataatattaaatacaaaatttacataatgaaa
aacatcaagaatgtcttactttaatgaaatactgcttactcttcccaaat
gcttgttatcttgttgccattaatgtggcttattaaaattttacctagtt
aaataaaaagtataaatgttaattcatatatgaggggagaaataaagatc
ccaggtagggggtttagaatataaaccatactatattaaaagtgaaagtc
taaaaattgtttatcctgttttacagaaggaggcattgtatgtctgtgaa
agtgttgtccaatgtcatccaatgaaagccatagggtactctctctagca
aagaactgctta
ctagcagtttctctttgtctattctttgtattatttgttatctacaggtg
gccatattgtttgcttcacgtttacttaatatgtaattccttcttattta
gggatttttatctttcacgtctaactagtttataacagtactatcttcca
tgcctataaatttgcatttgtcaaatccctttattttcaaattttattac
ttcactttcatctgtgtttgtaaaaagcagtttattcacaagttctctac
tgctcaataacaccctcaatacttgtttccctcttactttttgttgtgtt
ctattttagtttttgagacagaatctcactctgtagtcatggctggccta
aacttagatatctgcaggcctctgtatatatatatatgtgtgtgtgtgtg
tgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_75292695_75293809
seq2: B6Ng01-005I20.b_47_1158 (reverse)

seq1  TTAGCAGTTC-TTGCT--AGAGAGTACCCCTATGGC-TTCATTGGGTAGA  46
      | |||||||| |||||  |||||||| ||||||||| |||||||| | ||
seq2  TAAGCAGTTCTTTGCTAGAGAGAGTA-CCCTATGGCTTTCATTGGAT-GA  48

seq1  CATTTGACCACACCTTCCACAGACATACAATGCCTCC-TCTGTAAAACAG  95
      |||| ||| ||| ||| |||||||||||||||||||| ||||||||||||
seq2  CATTGGACAACA-CTTTCACAGACATACAATGCCTCCTTCTGTAAAACAG  97

seq1  GATAAAACAATTTTTTAGACCTTCACCTTTTAATATTAGTATGGTTTATA  145
      ||| |||||| ||||||||| |||| ||||||||| ||||||||||||||
seq2  GAT-AAACAA-TTTTTAGACTTTCA-CTTTTAATA-TAGTATGGTTTATA  143

seq1  TTCTAAACCCCCTACCTGGGATCTTTATTTCTCCCCTCATAATATGAATT  195
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTAAACCCCCTACCTGGGATCTTTATTTCTCCCCTCAT-ATATGAATT  192

seq1  AACATTTATACTTTTTATTTAACTAGGTAAAAATTTTAATAAGCCACATT  245
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AACATTTATACTTTTTATTTAACTAGGT-AAAATTTTAATAAGCCACATT  241

seq1  AATGGCAACAAGATAACAAGCATTTGGGAAGAGTAAGCAGTATTTCATTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAACAAGATAACAAGCATTTGGGAAGAGTAAGCAGTATTTCATTA  291

seq1  AAGTAAGACATTCTTGATGTTTTTCATTATGTAAATTTTGTATTTAATAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGACATTCTTGATGTTTTTCATTATGTAAATTTTGTATTTAATAT  341

seq1  TA-TTGACAAATGAGTTGAAGGATATTTGACATAGATTTCAAAAAGCTAG  394
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGACAAATGAGTTGAAGGATATTTGACATAGATTTCAAAAAGCTAG  391

seq1  TGGAAAGTTTTTACTATATTGAAATGGATGTTTGAAGAGTTATATACATC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTTTTACTATATTGAAATGGATGTTTGAAGAGTTATATACATC  441

seq1  GAACCTGATTCCAGTATTACACAATGCACTTATGAATTGAATCATTCATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGATTCCAGTATTACACAATGCACTTATGAATTGAATCATTCATA  491

seq1  TCATACTATGGCATTTAAATGTACTTTGGAGCCAGGCAGTGGTGGCACAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTATGGCATTTAAATGTACTTTGGAGCCAGGCAGTGGTGGCACAC  541

seq1  ACCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGGTGGATTTCTGAGTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGGTGGATTTCTGAGTTC  591

seq1  GAGGCCAGCCTGGTCTACAGAGTAAATTTCAGAACAGCCAGGGCTACACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAGAGTAAATTTCAGAACAGCCAGGGCTACACA  641

seq1  GAGAAACCCTGTCTCAAAAAACGTACATACTTTGGGGTTATATGTATCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTCAAAAAACGTACATACTTTGGGGTTATATGTATCCA  691

seq1  TTTTAACAGTACCCCCCGGAAGCTCGTGTCTCTAGTTGCATATGTATCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAGTACCCCCCGGAAGCTCGTGTCTCTAGTTGCATATGTATCAG  741

seq1  AAGATGGCCTAGTCAGCCATCAGTGGAAAGAGAGGCTCATTGGTCGTGCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCCTAGTCAGCCATCAGTGGAAAGAGAGGCTCATTGGTCGTGCA  791

seq1  AACTTTATATGCCTCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGGGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATATGCCTCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGGGT  841

seq1  GGGTGGGTAGGTGAGTGGGGGGAGGGTATGGGGGACTTTTGGGATAGCAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTAGGTGAGTGGGGGGAGGGTATGGGGGACTTTTGGGATAGCAT  891

seq1  TGGAAATGTAAATGAGGAAAATACCTAATAAAAACGTTAATATAAAAATA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTAAATGAGGAAAATACCTAATAAAAACGTTAATATAAAAATA  941

seq1  TACAAGAGTATACCTCTCTTTTCTATCTTGAAAGATGAAAATCATCTTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGTATACCTCTCTTTTCTATCTTGAAAGATGAAAATCATCTTTT  991

seq1  TACCTGAGTTTTTGACTAGAACTTAAAATTAACAGGCTTAAGTTACAGGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAGTTTTTGACTAGAACTTAAAATTAACAGGCTTAAGTTACAGGG  1041

seq1  TGGGACTGGAGAAGTAATGATGTTTATCTACAGCATTTCCTCCAAGATAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTGGAGAAGTAATGATGTTTATCTACAGCATTTCCTCCAAGATAG  1091

seq1  TTCCCAATTTTGACAGAATTC  1115
      |||||||||||||||||||||
seq2  TTCCCAATTTTGACAGAATTC  1112

seq1: chr4_75186016_75186437
seq2: B6Ng01-005I20.g_66_487

seq1  GAATTCCTAGCAGTTTCTCTTTGTCTATTCTTTGTATTATTTGTTATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCAGTTTCTCTTTGTCTATTCTTTGTATTATTTGTTATCTA  50

seq1  CAGGTGGCCATATTGTTTGCTTCACGTTTACTTAATATGTAATTCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCCATATTGTTTGCTTCACGTTTACTTAATATGTAATTCCTTCT  100

seq1  TATTTAGGGATTTTTATCTTTCACGTCTAACTAGTTTATAACAGTACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGGATTTTTATCTTTCACGTCTAACTAGTTTATAACAGTACTAT  150

seq1  CTTCCATGCCTATAAATTTGCATTTGTCAAATCCCTTTATTTTCAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGCCTATAAATTTGCATTTGTCAAATCCCTTTATTTTCAAATTT  200

seq1  TATTACTTCACTTTCATCTGTGTTTGTAAAAAGCAGTTTATTCACAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTCACTTTCATCTGTGTTTGTAAAAAGCAGTTTATTCACAAGTT  250

seq1  CTCTACTGCTCAATAACACCCTCAATACTTGTTTCCCTCTTACTTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGCTCAATAACACCCTCAATACTTGTTTCCCTCTTACTTTTTGT  300

seq1  TGTGTTCTATTTTAGTTTTTGAGACAGAATCTCACTCTGTAGTCATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTATTTTAGTTTTTGAGACAGAATCTCACTCTGTAGTCATGGCT  350

seq1  GGCCTAAACTTAGATATCTGCAGGCCTCTGTATATATATATATGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAACTTAGATATCTGCAGGCCTCTGTATATATATATATGTGTGTG  400

seq1  TGTGTGTGTGTGTGTGTGTGTG  422
      ||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTG  422