BAC Information

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BAC

Clone NameB6Ng01-005M15
Chromosome4 (Build37)2 (Build37)
Map Location 51,825,298 - 51,825,75445,870,926 - 45,871,747
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005M15.bB6Ng01-005M15.g
ACCDH842830DH842831
length833829
definitionDH842830|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M15, 5' end.DH842831|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,825,298 - 51,825,754)(45,870,926 - 45,871,747)
sequence
gaattcctttgtggttgtgttacctcactcaggatgatgccctccaggtc
catccattgccctgtcttcttaatggaagagggctctataagttccttct
ctctactgtcaggcatttcatctaaggtcctttgtgtcctgagagtctct
tacctcccaagtctctggtgaattttgaatgcccccaacctccaacctcc
tacctcccaaggtttcctgtttccattctttctgctggccctcagggatt
cagtccttttcccttacccaataccagatcaggttccctgcttcccctta
ctccctctccccacccctgtccactttccctctcaggtctgtccctccct
ccctccccacttgtgagtgctatcttctccttcccaagtgtgactgaggt
gtcctcacttgagcatttcagcttgttgacctttttgaattctatggatg
gtatcttgagtattctgtacttttttcatttctttttctgttctttcttt
tctatcatccacttattagtgagtacataccatgcatgtccttttgggtc
tgagttacctcactcaggatgatattttctagctctatctctttgcctgc
aaaactcaggatgtcctcattcttaatagctgtgtagtattccattgtgt
aaatgaacaactatacatacatatatatatgtatgtatatatatatatgt
atatatatatatatatatatatatatatatatattttttttttatatata
tatatatatatatatatatatatatatttatatttttgtatgtatgtatt
tatatatgtatgtgtttatttcttttttttttt
gaattctgttaaacataactatgtacatgtatatatcatgcatattattg
ttatgggcatatgtatttatagctagaaaataagtggacccatacaacta
cattgaagaaaacatttgcaaaaggcagatttcaataaatattctctgta
gtttctgagaaataacttatttttatttcattctatgaattcagattttc
aatgtgaaaccacattattttatggtcataaaagattcaacagtgttctt
ttaaatgacctcaggatgtcagtgttgatggggcattttcatgccacaag
aaactaaaaatctcagtcctgcctgaaaaaatacagagcaaagacctaga
gaagcttgtgacttggcagccggttttccgacgtataagtaatgcaaaat
ggactccaaagaaataaggcttatctagatcactctttgagtttgtcaat
cataaggcattattaagcacccacgatatgtctagcactctgttgatgca
tctgttagcacgaacaacccaatgaattagcatgacaaaaatacaaactc
tgataacaaaagtttttcctttttgaaagttatttttaaacttttagtta
aggacattctgatacctttctctttttgcttgtcttcagtgcattttgtg
atgaaaatgtaggtggatttgattcattgagtagtgtacaatacatgcag
gcttccctgtatgtactgggatttaataatcacaagtttctttgcaaaac
attctttttctatttttaaagtcagtaatgaaaactattttaagaggaag
aggagaagaggagggagtaggagggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_51825298_51825754
seq2: B6Ng01-005M15.b_728_875

seq1  TATATATATATATATATATATATATATATATATATATATATATATATATT  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATGTATATATATATATATATATATATATATATATATATT  50

seq1  TTTAAGTCAGGGGAGAGCGCGAACGCAGTCCCCCACTACCACAAAT-TAT  99
      |||   | |                           ||  | | || |||
seq2  TTTTTTTTA---------------------------TA-TATATATATAT  72

seq1  GCAGTCGAGTTTCCCGCATTTGGGGAAATCGCAGGGGTCAGCACACCCCA  149
                       || |    | ||                     
seq2  -----------------ATATATATATAT---------------------  84

seq1  AAGTGCAATGGGTGAGCCTCGCCCTGGGAAAACCACCTTCGTGATCATGG  199
             ||                    | |      |  | ||  |  
seq2  -------AT--------------------ATA------TATTTATATTTT  101

seq1  TGTCTCCCCTGCCAGGTAAGTATCAATTATATATATTTTAACAGTGAGAA  249
      |||          | ||| ||||   |||||||| | |     |||    
seq2  TGT----------ATGTATGTAT---TTATATATGTAT-----GTG----  129

seq1  ATGAATCTCTCAAAGCATCAAACTTTCTTAAAGTGAGGCTTGCTCTTTAA  299
       |  || |||       |     |||                        
seq2  -TTTATTTCT------TTTTTTTTTT------------------------  148

seq1  CAAGGTGGAAGATGTGTCAAAAATCAAATGTATGTGATAGCAACTTATAA  349
                                                        
seq2  --------------------------------------------------  148

seq1  TGGATATTGAATCCAATATGAGAGAAATATGAGAGAATTTTCTGCTGGTA  399
                                                        
seq2  --------------------------------------------------  148

seq1  TGCATTTTATATAGTCCTAGTCACTTAGGGCACAGATATCAGTTTTCTTT  449
                                                        
seq2  --------------------------------------------------  148

seq1  TTTTTTTT  457
              
seq2  --------  148

seq1: chr2_45870926_45871747
seq2: B6Ng01-005M15.g_68_896

seq1  GAATTCTGTTAAACATAACTATGTACATGTATATATCATGCATATTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTAAACATAACTATGTACATGTATATATCATGCATATTATTG  50

seq1  TTATGGGCATATGTATTTATAGCTAGAAAATAAGTGGACCCATACAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGCATATGTATTTATAGCTAGAAAATAAGTGGACCCATACAACTA  100

seq1  CATTGAAGAAAACATTTGCAAAAGGCAGATTTCAATAAATATTCTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGAAAACATTTGCAAAAGGCAGATTTCAATAAATATTCTCTGTA  150

seq1  GTTTCTGAGAAATAACTTATTTTTATTTCATTCTATGAATTCAGATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAGAAATAACTTATTTTTATTTCATTCTATGAATTCAGATTTTC  200

seq1  AATGTGAAACCACATTATTTTATGGTCATAAAAGATTCAACAGTGTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAACCACATTATTTTATGGTCATAAAAGATTCAACAGTGTTCTT  250

seq1  TTAAATGACCTCAGGATGTCAGTGTTGATGGGGCATTTTCATGCCACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGACCTCAGGATGTCAGTGTTGATGGGGCATTTTCATGCCACAAG  300

seq1  AAACTAAAAATCTCAGTCCTGCCTGAAAAAATACAGAGCAAAGACCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAAATCTCAGTCCTGCCTGAAAAAATACAGAGCAAAGACCTAGA  350

seq1  GAAGCTTGTGACTTGGCAGCCGGTTTTCCGACGTATAAGTAATGCAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTGTGACTTGGCAGCCGGTTTTCCGACGTATAAGTAATGCAAAAT  400

seq1  GGACTCCAAAGAAATAAGGCTTATCTAGATCACTCTTTGAGTTTGTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCAAAGAAATAAGGCTTATCTAGATCACTCTTTGAGTTTGTCAAT  450

seq1  CATAAGGCATTATTAAGCACCCACGATATGTCTAGCACTCTGTTGATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCATTATTAAGCACCCACGATATGTCTAGCACTCTGTTGATGCA  500

seq1  TCTGTTAGCACGAACAACCCAATGAATTAGCATGACAAAAATACAAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAGCACGAACAACCCAATGAATTAGCATGACAAAAATACAAACTC  550

seq1  TGATAACAAAAGTTTTTCCTTTTTGAAAGTTATTTTTAAAC-TTTAGTTA  599
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGATAACAAAAGTTTTTCCTTTTTGAAAGTTATTTTTAAACTTTTAGTTA  600

seq1  AGGACATTCTGATACCTTTCTC-TTTTGCTTGTCTTCAGTGCA-TTTGTG  647
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  AGGACATTCTGATACCTTTCTCTTTTTGCTTGTCTTCAGTGCATTTTGTG  650

seq1  ATGAAAATGTAGGTGGATTTGATTCATTGAGTAGTGTACAATACATGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGTAGGTGGATTTGATTCATTGAGTAGTGTACAATACATGCAG  700

seq1  GCTTCCCTGTATGTACT-GGATTTAATAATCACAAG-TTCTTTGCAAAAC  745
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  GCTTCCCTGTATGTACTGGGATTTAATAATCACAAGTTTCTTTGCAAAAC  750

seq1  ATTC-TTTTCTATTTTTAAAGTCAGTAATGAAAACTATTTTAAGAGGAAG  794
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTCTATTTTTAAAGTCAGTAATGAAAACTATTTTAAGAGGAAG  800

seq1  AGGAGAAGAGGAAGGAGGAGGA-GGAGAA  822
      |||||||||||| |||| |||| ||||||
seq2  AGGAGAAGAGGAGGGAGTAGGAGGGAGAA  829