BAC Information

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BAC

Clone NameB6Ng01-006B08
Chromosome4 (Build37)
Map Location 13,699,197 - 13,884,287
singlet/doubletdoublet
Overlap geneRunx1t1
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006B08.bB6Ng01-006B08.g
ACCDH843041DH843042
length1,1721,056
definitionDH843041|Mus musculus domesticus DNA, BAC clone: B6Ng01-006B08, 5' end.DH843042|Mus musculus domesticus DNA, BAC clone: B6Ng01-006B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,883,108 - 13,884,287)(13,699,197 - 13,700,265)
sequence
gaattctatatataaagtaaaagcttaaaatatttagagctttactgaaa
gttcagtaatgcctagtttaaataaaacatttctgagtatggatgagatg
gtatttccagaaatgattagattatgagggcacaactgtaatgaactggc
caatcacttgattgattcgtcctttgatatcatcattagaaggtgcaaaa
aggtaggcagccggcctgagtgggtgaagcaagttattagggcctgtccc
tgcagctgtgtctttccctagcctctgcccatttgatcttttctctactt
ccctggctacggtgagttgagaattttctacccatcaccatgatgttctg
caaggtaatgagtccagaagaccaatatagccaatggagctctctgaaac
tgagccaaaaataacttcctctataagttatcaggcacatggtcacaatg
attttaaaagtcagccaatgctctctaaacatagaggttctctgtagtcc
ctcaccctagaaactttgattcattttgtctgacatgtaaagtaaaaatc
atttcctctgaagttctttgagatgattctgatgtaaaggcctctccaac
tggtgtctcccatcagtgacttgaaacgtttagcatattcctgaaccagc
tgtggggcttgtcgaaaaagattgcagtccttcatctagaggttatgatt
cagatactaccgactaggacacatgaacagctaatattttcccacactgt
gcaggcaactgatggtcttggacatcacttcaataaagaatccctcaaag
aatcttgtgtgctgcttcatagttttcttaaattaagatccttactagta
attaaagctcaacatgatgcaagatgataatcttactaccaaaaaccaga
ttgtattgctttccagtgtgaatttacctaagagacatgagtatgtttta
ccttttatacacacttttctgccataactcaaactgttcttaattataat
aaaaatattagaagcatgcattatacttgcaaagctttagtattgaagac
tatttataaaatgtaggcttagttaagctgaacatcccctcagaaagagg
aatggtttccaaggcatgtaaggctcacaatattcagttaacttcagttt
cgggtaggggagatcagtgaat
gaattcatatctgttggtacattaaaaaaaaaaaagtgatgtctaacttt
aggaaaacaccaagtatgaactaagtgtatgctgcactggtctagaagct
tctgaagatctgtcctgaaccacagacaccacagaggtgttaatgaccta
ttgaaagctctgctccagcttttgctgggaatggacttggtcagaggctc
cactcataagaaaaagctgtgctgagacaaagttggtagtcagcacaaat
gttgtgtgatcctggttggcactctagtggctcagaagagatttgagttt
gtgtgactgtctgctttcccgagaagtggactagcaaagtatgcagcttt
tgtggccattgctttggacacatccctgcttgatgctgtcccacagtctc
agcgacatctagttcctaattcctcaaaatacgtactggcttattattat
ttatattgttattatagtagtatgtttgttgtttctttgagacagggtct
catagtgcaatctaggcaagagtgactttgaactcttggccctcctcttg
tctgttccggatgtggtgggattgcaccacatagggatcttatttactgc
cctaaagttctccggaagatggtggcaaatgaggatttatttaagaacac
agaacatgaaacagtgtcctttagagttttccatccctctgggggaagtt
ctgcactttggcgtctgcatctacatttctttcgtctggtcccttcttca
tttacttccgcctttctatgtgggtagtgagcaatgccagttaaagggga
aggcaaggaagtcaattgtgttacctagaatgataattctcccccatttg
cttccttcatctttcctagtttatgggactgctgttattaaacgttaatt
ttgacaattctatctcggttggtatacttccacagttttgcacagggagg
aagagttgtgtcgatactgtacttaagggaacagatattaggacacatcg
gtgtatagaattgtttctacgttcagctctgaacgagtactatttaagaa
cagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13883108_13884287
seq2: B6Ng01-006B08.b_47_1218 (reverse)

seq1  ATTCACTCTGGATTCTCCCCTACCCCGGAACTGGAGTT-ACTGAATATTG  49
      |||||||   || ||||||||| |||| ||||| |||| |||||||||||
seq2  ATTCACT---GA-TCTCCCCTA-CCCGAAACTGAAGTTAACTGAATATTG  45

seq1  TGAGCCCCTACATGCCTGGGAACCATTTCCTCCTTTCTGA-GGGATGTCT  98
      |||| || ||||||||| |||| |  ||||| |||||||| ||||||  |
seq2  TGAG-CCTTACATGCCTTGGAAACCATTCCT-CTTTCTGAGGGGATG--T  91

seq1  CCAGCCCTTACT-AGGCTACATTTTAT-AATAGTCTTTCAATACTAAAGC  146
       ||| | | ||| || ||||||||||| ||||||| ||||||||||||||
seq2  TCAG-CTTAACTAAGCCTACATTTTATAAATAGTC-TTCAATACTAAAGC  139

seq1  TTTGCAAGTTATAATGCATGCTTCTAATATTTTTATTATAATTAAGAACA  196
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAG-TATAATGCATGCTTCTAATATTTTTATTATAATTAAGAACA  188

seq1  GTTTGAGTTATGGCAGAAAAGTGTGTATAAAAGGTAAAACATACTCATGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTTATGGCAGAAAAGTGTGTATAAAAGGTAAAACATACTCATGT  238

seq1  CTCTTAGGTAAATTCACACTGGAAAGCAATACAATCTGGTTTTTGGTAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGGTAAATTCACACTGGAAAGCAATACAATCTGGTTTTTGGTAGT  288

seq1  AAGATTATCATCTTGCATCATGTTGAGCTTTAATTACTAGTAAGGATCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATCATCTTGCATCATGTTGAGCTTTAATTACTAGTAAGGATCTT  338

seq1  AATTTAAGAAAACTATGAAGCAGCACACAAGATTCTTTGAGGGATTCTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGAAAACTATGAAGCAGCACACAAGATTCTTTGAGGGATTCTTT  388

seq1  ATTGAAGTGATGTCCAAGACCATCAGTTGCCTGCACAGTGTGGGAAAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTGATGTCCAAGACCATCAGTTGCCTGCACAGTGTGGGAAAATA  438

seq1  TTAGCTGTTCATGTGTCCTAGTCGGTAGTATCTGAATCATAACCTCTAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTTCATGTGTCCTAGTCGGTAGTATCTGAATCATAACCTCTAGA  488

seq1  TGAAGGACTGCAATCTTTTTCGACAAGCCCCACAGCTGGTTCAGGAATAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACTGCAATCTTTTTCGACAAGCCCCACAGCTGGTTCAGGAATAT  538

seq1  GCTAAACGTTTCAAGTCACTGATGGGAGACACCAGTTGGAGAGGCCTTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACGTTTCAAGTCACTGATGGGAGACACCAGTTGGAGAGGCCTTTA  588

seq1  CATCAGAATCATCTCAAAGAACTTCAGAGGAAATGATTTTTACTTTACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAATCATCTCAAAGAACTTCAGAGGAAATGATTTTTACTTTACAT  638

seq1  GTCAGACAAAATGAATCAAAGTTTCTAGGGTGAGGGACTACAGAGAACCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACAAAATGAATCAAAGTTTCTAGGGTGAGGGACTACAGAGAACCT  688

seq1  CTATGTTTAGAGAGCATTGGCTGACTTTTAAAATCATTGTGACCATGTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTTAGAGAGCATTGGCTGACTTTTAAAATCATTGTGACCATGTGC  738

seq1  CTGATAACTTATAGAGGAAGTTATTTTTGGCTCAGTTTCAGAGAGCTCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAACTTATAGAGGAAGTTATTTTTGGCTCAGTTTCAGAGAGCTCCA  788

seq1  TTGGCTATATTGGTCTTCTGGACTCATTACCTTGCAGAACATCATGGTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTATATTGGTCTTCTGGACTCATTACCTTGCAGAACATCATGGTGA  838

seq1  TGGGTAGAAAATTCTCAACTCACCGTAGCCAGGGAAGTAGAGAAAAGATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAAAATTCTCAACTCACCGTAGCCAGGGAAGTAGAGAAAAGATC  888

seq1  AAATGGGCAGAGGCTAGGGAAAGACACAGCTGCAGGGACAGGCCCTAATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCAGAGGCTAGGGAAAGACACAGCTGCAGGGACAGGCCCTAATA  938

seq1  ACTTGCTTCACCCACTCAGGCCGGCTGCCTACCTTTTTGCACCTTCTAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTCACCCACTCAGGCCGGCTGCCTACCTTTTTGCACCTTCTAAT  988

seq1  GATGATATCAAAGGACGAATCAATCAAGTGATTGGCCAGTTCATTACAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATCAAAGGACGAATCAATCAAGTGATTGGCCAGTTCATTACAGT  1038

seq1  TGTGCCCTCATAATCTAATCATTTCTGGAAATACCATCTCATCCATACTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTCATAATCTAATCATTTCTGGAAATACCATCTCATCCATACTC  1088

seq1  AGAAATGTTTTATTTAAACTAGGCATTACTGAACTTTCAGTAAAGCTCTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTTTATTTAAACTAGGCATTACTGAACTTTCAGTAAAGCTCTA  1138

seq1  AATATTTTAAGCTTTTACTTTATATATAGAATTC  1180
      ||||||||||||||||||||||||||||||||||
seq2  AATATTTTAAGCTTTTACTTTATATATAGAATTC  1172

seq1: chr4_13699197_13700265
seq2: B6Ng01-006B08.g_66_1121

seq1  GAATTCATATCTGTTGGTACATTAAAAAAAAAAAAGTGATGTCTAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCTGTTGGTACATTAAAAAAAAAAAAGTGATGTCTAACTTT  50

seq1  AGGAAAACACCAAGTATGAACTAAGTGTATGCTGCACTGGTCTAGAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACACCAAGTATGAACTAAGTGTATGCTGCACTGGTCTAGAAGCT  100

seq1  TCTGAAGATCTGTCCTGAACCACAGACACCACAGAGGTGTTAATGACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGATCTGTCCTGAACCACAGACACCACAGAGGTGTTAATGACCTA  150

seq1  TTGAAAGCTCTGCTCCAGCTTTTGCTGGGAATGGACTTGGTCAGAGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCTCTGCTCCAGCTTTTGCTGGGAATGGACTTGGTCAGAGGCTC  200

seq1  CACTCATAAGAAAAAGCTGTGCTGAGACAAAGTTGGTAGTCAGCACAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATAAGAAAAAGCTGTGCTGAGACAAAGTTGGTAGTCAGCACAAAT  250

seq1  GTTGTGTGATCCTGGTTGGCACTCTAGTGGCTCAGAAGAGATTTGAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGATCCTGGTTGGCACTCTAGTGGCTCAGAAGAGATTTGAGTTT  300

seq1  GTGTGACTGTCTGCTTTCCCGAGAAGTGGACTAGCAAAGTATGCAGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTGTCTGCTTTCCCGAGAAGTGGACTAGCAAAGTATGCAGCTTT  350

seq1  TGTGGCCATTGCTTTGGACACATCCCTGCTTGATGCTGTCCCACAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCATTGCTTTGGACACATCCCTGCTTGATGCTGTCCCACAGTCTC  400

seq1  AGCGACATCTAGTTCCTAATTCCTCAAAATACGTACTGGCTTATTATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACATCTAGTTCCTAATTCCTCAAAATACGTACTGGCTTATTATTAT  450

seq1  TTATATTGTTATTATAGTAGTATGTTTGTTGTTTCTTTGAGACAGGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGTTATTATAGTAGTATGTTTGTTGTTTCTTTGAGACAGGGTCT  500

seq1  CATAGTGCAATCTAGGCAAGAGTGACTTTGAACTCTTGGCCCTCCTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGCAATCTAGGCAAGAGTGACTTTGAACTCTTGGCCCTCCTCTTG  550

seq1  TCTGTTCCGGATGTGGTGGGATTGCACCACATAGGGATCTTATTTACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCGGATGTGGTGGGATTGCACCACATAGGGATCTTATTTACTGC  600

seq1  CCTAAAGTTCTCCGGAAGATGGTGGCAAATGAGGATTTATTTAAGAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTTCTCCGGAAGATGGTGGCAAATGAGGATTTATTTAAGAACAC  650

seq1  AGAACATGAAACAGTGTCCTTTAGAGTTTTCCATCCCTCTGGGGGAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGAAACAGTGTCCTTTAGAGTTTTCCATCCCTCTGGGGGAAGTT  700

seq1  CTGCACTTTGGCGTCTGCATCTACATTTCTTTCGTCTGGTCCCTTCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTTTGGCGTCTGCATCTACATTTCTTTCGTCTGGTCCCTTCTTCA  750

seq1  TTTACTTCCGCCTTTCTATGTGGGTAGTGAGCAATGCCAGTTAAAAGGGG  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTACTTCCGCCTTTCTATGTGGGTAGTGAGCAATGCCAGTT-AAAGGGG  799

seq1  AAGGCAAGGAAGTCAATTGTGTTACCTAG-ATGATAATTCTCCCCCATTT  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGGCAAGGAAGTCAATTGTGTTACCTAGAATGATAATTCTCCCCCATTT  849

seq1  GCTTCCTTCATCTTTCCTAGTTTAT-GGACTGCTGTTATTAAACGTTAAT  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTTCCTTCATCTTTCCTAGTTTATGGGACTGCTGTTATTAAACGTTAAT  899

seq1  TTTGACAATTCTAATCTCGGTTGGTTATACTTCCACAGTTTTGCACAGGG  948
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  TTTGACAATTCT-ATCTCGGTTGG-TATACTTCCACAGTTTTGCACAGGG  947

seq1  AAGAAGAGTGTGGTCGATACTGTAACTTAAAGGGAACAAGATAATAAGGA  998
      | |||||||   ||||||||||| |||| |||||||| |||| || ||||
seq2  AGGAAGAGTTGTGTCGATACTGT-ACTT-AAGGGAAC-AGAT-ATTAGGA  993

seq1  CAACCATCCGTGATTTAGAATTGTTTTCTACGTTTCAGCATCTGAACAAA  1048
      ||  |||| ||| | |||||||| |||||||| |||||| |||||||  |
seq2  CA--CATCGGTG-TATAGAATTG-TTTCTACG-TTCAGC-TCTGAAC-GA  1036

seq1  GTAGCTATTTAAGAACAGAAC  1069
      ||| |||||||||||||||||
seq2  GTA-CTATTTAAGAACAGAAC  1056