BAC Information

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BAC

Clone NameB6Ng01-006G01
Chromosome4 (Build37)
Map Location 63,396,033 - 63,533,914
singlet/doubletdoublet
Overlap geneTnfsf15, Tnfsf8
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451
Downstream geneRpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006G01.bB6Ng01-006G01.g
ACCDH843254DH843255
length9991,114
definitionDH843254|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G01, 5' end.DH843255|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,396,033 - 63,397,038)(63,532,816 - 63,533,914)
sequence
gaattcttccctgcatgccctctgttcctgaatgccttccaatttcacat
gaggaaacactgaggatgccttgctatcagatagacaacaatttggattg
tggaactgtcctttgtcctggtaagatcttgacaagaacacccttttcga
tcacttggacgctgctactgcacatgctgtgtccgccaaaacttacatga
cttgcctctgtgtgttaaagatcaattaagaaaatggcccagttagttgg
aaggacatgtgaaaatacaagaactaccattcacaggcttgagcacgaga
cgcaggagcaaggcaggcttccaacttacaatcatacaatcttttcacac
acttgcatgccttggcaagagaattctctgacttggatcttgtaattaca
cagcctcactaacagattatttcttactaccatggacatctcatctctgt
ctacaacttaaaatctacatgggcacagcacacacacgtgtgtgtatgtg
tgtgtgtgtctgtgtgtgcttgtgactgaggggttgtaactgagtgcaaa
agagaaggcttcaacccaggagagtgtgcaccaagatgtccaggccctgc
ctcctgctctctgggtcttcctacagctgcttagcagacctttatgcctt
tggtttcttccttttgtctattttacagcttttctctagagggctaacta
gagaggattctatgatgatcaagattctattgtggtcataatgctttggt
ggcactgcaggcctttcacactatagtttcatatatttttttaaaaattt
attttatttattatatatgtatatgcacagtgcatgtgtggaggtctaat
gacaacgtgtgctaggtctgctttttactttcaccacaagggtcctaagg
caagcacctttcccactgagcccgcccactgagcccacagatctacttat
ctgacaatctattggtcacctcttttgttacaactgtttgctcttttct
gaattctttgccccctctgaacctgctcctttgtcggcgcgaaacaatat
tcttactcaagtcctctccaatctcccctatcctgccaaaaaagtgatcc
caagattgtccctcccctcttaaaatccaaacttccctcaaaagagggat
accatgtcccattgacgacgtatgaatgattccaaaatctatatttccta
cttagggaggacaagcacattcctaaccttacaggcatggacatgagagg
ctcagaaaccctgggaggacctgcgagtggggacaactccattttccctc
agagagagactgcctgcccaacccatgcttgccatgcctgcagggctctt
ccttgctaccccaacccttcgaagtctggccttctttggagaggtgtgat
catacttgcctcagacaccgcctggaacgacgatgccctttcaccatcct
gtgacgatatggctcatgcaagactccagtctccttaaatcttatccctt
gaaagtttcatttgctttctgggtctggcatgttttgttcacttctactg
ggttaatagcacctggctatccttcaagaggtaatatttcaattggaatg
aaatagataaacaacagccccctttgcctcttaagcattctggtttaaac
aatgacttgttgagtaaactaattatagtacacacagcatccaacaacac
ataccacatctctctgtactcatcaggtctttcctccatcttgaagctcc
actctcccccatagtcttcctgggactactttactgcatcttccacatgc
agagagctacatagctcttcaaagatcgaactcataggttcctagcatag
cccatggtaccaagaatgctgcaagtccctgtcaacctgtaggaaacaag
ggtttatagtctggtagctgtgtgctctaaggcagtgtcagcacaagcat
cctcatccctgaggaaacgactatggactaatctctacgatagcgaatcc
ctagaagctatttctgatacaatgaacacaccattagggggaagtacttc
aatataactgcaaaaaagcttagatgcctggggagactaaatttgcttcc
acagagcaggcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63396033_63397038
seq2: B6Ng01-006G01.b_39_1037

seq1  GAATTCTTCCACCATCACAACCCTCTGTTCCTGAGTCACTTCAGATTTCA  50
      |||||||||  ||  ||   |||||||||||||| |  ||||  ||||||
seq2  GAATTCTTC--CCTGCA-TGCCCTCTGTTCCTGAATGCCTTCCAATTTCA  47

seq1  CATGATAGAAGAAAAGCAACTGCCTTGGTATCAGATAGACATGAATTTGG  100
      |||||  |||  |  |    ||||||| |||||||||||||  |||||||
seq2  CATGA-GGAAACACTGAGGATGCCTTGCTATCAGATAGACAACAATTTGG  96

seq1  ATTGTGGTTCTGTCCTTTGTCAATGGTAAGATCTTGAGAAAGACACCCTT  150
      |||||||  ||||||||||||  |||||||||||||| ||  ||||||||
seq2  ATTGTGGAACTGTCCTTTGTC-CTGGTAAGATCTTGACAAGAACACCCTT  145

seq1  TTCTCTGAGTTTAGTGTACCTACTGGAGATGCTAACACC-CCCAAACCTA  199
      |||  | | ||    |   |||||| | |||||    || || |||| ||
seq2  TTCGATCACTTGGACGCTGCTACTGCACATGCTGTGTCCGCCAAAACTTA  195

seq1  AGTGACTTGCAGAGTTGAGGTAAAGATCAATTAAGAAAATGGCCCAGTTA  249
        ||||||||     || | ||||||||||||||||||||||||||||||
seq2  CATGACTTGCCTCTGTGTGTTAAAGATCAATTAAGAAAATGGCCCAGTTA  245

seq1  GTTGGAAGGACATGTGAAAATACAAGAACTACCATTCACAGGCTTGAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGGACATGTGAAAATACAAGAACTACCATTCACAGGCTTGAGCA  295

seq1  CGAGACGCAGGAGCAAGGCAGGCTTCCAACTTACAATCATACAATCTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACGCAGGAGCAAGGCAGGCTTCCAACTTACAATCATACAATCTTTT  345

seq1  CACACACTTGCATGCCTTGGCAAGAGAATTCTCTGACTTGGATCTTGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTTGCATGCCTTGGCAAGAGAATTCTCTGACTTGGATCTTGTAA  395

seq1  TTACACAGCCTCACTAACAGATTATTTCTTACTACCATGGACATCTCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGCCTCACTAACAGATTATTTCTTACTACCATGGACATCTCATC  445

seq1  TCTGTCTACAACTTAAAATCTACATGGGCACAGCACACACACGTGTGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTACAACTTAAAATCTACATGGGCACAGCACACACACGTGTGTGT  495

seq1  ATGTGTGTGTGTGTCTGTGTGTGCTTGTGACTGAGGGGTTGTAACTGAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTCTGTGTGTGCTTGTGACTGAGGGGTTGTAACTGAGT  545

seq1  GCAAAAGAGAAGGCTTCAACCCAGGAGAGTGTGCACCAAGATGTCCAGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAGAAGGCTTCAACCCAGGAGAGTGTGCACCAAGATGTCCAGGC  595

seq1  CCTGCCTCCTGCTCTCTGGGTCTTCCTACAGCTGCTTAGCAGACCTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCTGCTCTCTGGGTCTTCCTACAGCTGCTTAGCAGACCTTTAT  645

seq1  GCCTTTGGTTTCTTCCTTTTGTCTATTTTACAGCTTTTCTCTAGAGGGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGTTTCTTCCTTTTGTCTATTTTACAGCTTTTCTCTAGAGGGCT  695

seq1  AACTAGAGAGGATTCTATGATGATCAAGATTCTATTGTGGTCATAATGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGAGGATTCTATGATGATCAAGATTCTATTGTGGTCATAATGCT  745

seq1  TTGGTGGCACTGCAGGCCTTTCACACTATAGTTTCATATATTTTTTTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCACTGCAGGCCTTTCACACTATAGTTTCATATATTTTTTTAAA  795

seq1  AATTTATTTTATTTATTATATATGTATATGCACAGTGCATGTGTGGAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTTATTTATTATATATGTATATGCACAGTGCATGTGTGGAGGT  845

seq1  CTAAGGACAACGTGTGCTAGGTCTGCTTTTTACTTTCACCACAAGGGTCC  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGACAACGTGTGCTAGGTCTGCTTTTTACTTTCACCACAAGGGTCC  895

seq1  TAAGGCAAGCACCTTTACCCACTGAGCCCGCCCACTGA-CCCACAGATCT  948
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  TAAGGCAAGCACCTTT-CCCACTGAGCCCGCCCACTGAGCCCACAGATCT  944

seq1  ATCTTATCCTGACATCCTATTGGTCACCTCTTTTGTTACCAACTGTTTGC  998
      | ||||| ||||||  |||||||||||||||||||||| |||||||||||
seq2  A-CTTAT-CTGACAATCTATTGGTCACCTCTTTTGTTA-CAACTGTTTGC  991

seq1  TCTTTTCT  1006
      ||||||||
seq2  TCTTTTCT  999

seq1: chr4_63532816_63533914
seq2: B6Ng01-006G01.g_109_1180 (reverse)

seq1  CAGGCCCTGCTCTGTGGGAAATGCAAATCTAGTTCTTCCCACCAGGCATT  50
      |||| ||||||||||||   | |||||| |||    || | ||||||| |
seq2  CAGG-CCTGCTCTGTGG---AAGCAAATTTAG----TCTCCCCAGGCA-T  41

seq1  CCTAGCTTTTTTGCAGTTTATTAATTGAAGTAACTTCCCCCTTAATGGTG  100
      |  ||||||||||||| ||||  |||||||| ||||||||| ||||||||
seq2  CTAAGCTTTTTTGCAG-TTAT--ATTGAAGT-ACTTCCCCC-TAATGGTG  86

seq1  CTGTTCTATTTGTATCAAGAAATAGCTTCTAGGGAATACGCTATCCTAGA  150
       |||||   ||||||| ||||||||||||||||| || ||||||| ||| 
seq2  -TGTTC--ATTGTATC-AGAAATAGCTTCTAGGG-ATTCGCTATCGTAG-  130

seq1  AGATTAGTCCATAGTCGTTTCCCTCAGGGATGAGGATGCTTTGTGCTGAC  200
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  AGATTAGTCCATAGTCGTTT-CCTCAGGGATGAGGATGC-TTGTGCTGAC  178

seq1  ACTGCCTTAGAGCACACAAGCCTACCAAGACTATAAACCCTTGTTTCCTA  250
      ||||||||||||||||||   ||||| |||||||||||||||||||||||
seq2  ACTGCCTTAGAGCACACA--GCTACC-AGACTATAAACCCTTGTTTCCTA  225

seq1  CAGGTTGACAGGGACTTGCAGCATTCTTGGTACCATGGGCTATGCTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGACAGGGACTTGCAGCATTCTTGGTACCATGGGCTATGCTAGGA  275

seq1  ACCTATGAGTTCAATCTTTGAAGAGCTATGTAGCTCTCTGCATGTGGAAG  350
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCTATGAGTTCGATCTTTGAAGAGCTATGTAGCTCTCTGCATGTGGAAG  325

seq1  ATGCAGTAAAGTAGTCCCAGGAAGACTATGGGGGAGAGTGGAGCTTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTAAAGTAGTCCCAGGAAGACTATGGGGGAGAGTGGAGCTTCAAG  375

seq1  GTGGAGGAAAGACCTGATGAGTAGGGAGAGATGTGGTAAGTGTTGCTGGA  450
       ||||||||||||||||||||||  ||||||||||||| |||||| ||||
seq2  ATGGAGGAAAGACCTGATGAGTACAGAGAGATGTGGTATGTGTTGTTGGA  425

seq1  TGCTGTGTGTACTATAATTAGTTTACTCAACAAGTCATTGTTTAAACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTGTACTATAATTAGTTTACTCAACAAGTCATTGTTTAAACCAG  475

seq1  AATGCTTAAGAGGCAAAGGGGGCTGTTGTTTATCTATTTCCTTCCAATTG  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATGCTTAAGAGGCAAAGGGGGCTGTTGTTTATCTATTTCATTCCAATTG  525

seq1  AAATATTACCTCCTGAAGGAAAGACAGGTGCTCTTAACACTGAAGACGTA  600
      |||||||||||| ||||||| || |||||||| ||||| | | ||| || 
seq2  AAATATTACCTCTTGAAGGATAGCCAGGTGCTATTAACCCAGTAGAAGTG  575

seq1  AACAAAACATGCCAGACCCAGAAAGTAAATGAAACTTACAAGGCTTAAGA  650
      ||||||||||||||||||||||||| ||||||||||| |||||  |||||
seq2  AACAAAACATGCCAGACCCAGAAAGCAAATGAAACTTTCAAGGGATAAGA  625

seq1  TTTACGGAGACTGGAGTCTTGCTTGAGCCATCTCCTCAGTGGATGGTGGA  700
      |||| ||||||||||||||||| |||||||| || |||  |||||||| |
seq2  TTTAAGGAGACTGGAGTCTTGCATGAGCCATATCGTCACAGGATGGTGAA  675

seq1  TGTGCATCCTTGTTCCATGCATTGGCTGAGGCATGTCTGATCACACCAGC  750
       | ||||| | |||||| ||  || |||||||| || ||||||||||  |
seq2  AGGGCATCGTCGTTCCAGGCGGTGTCTGAGGCAAGTATGATCACACC-TC  724

seq1  TCCAAAGAAGGCCAGACTTCGAAGGGTTGGGGTAGCAAGGAAGAGCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAAGGCCAGACTTCGAAGGGTTGGGGTAGCAAGGAAGAGCCCTG  774

seq1  TAGGCATGGCATGCATGGGTTGGGCAGGCAGTCTCTCTCTGTACCTGCAA  850
       |||||||||| ||||||||||||||||||||||||||||| |     ||
seq2  CAGGCATGGCAAGCATGGGTTGGGCAGGCAGTCTCTCTCTG-AGGGAAAA  823

seq1  TGGAGTTGTCCCCACTCGCTGCTCCTCCCAGGGTTTCTGAGCCTCTCATC  900
      ||||||||||||||||||| | ||||||||||||||||||||||||||| 
seq2  TGGAGTTGTCCCCACTCGCAGGTCCTCCCAGGGTTTCTGAGCCTCTCATG  873

seq1  TCCATGCCTCTCAGGTTAGGACTGTGCTTGTCCTCCTGAAGTAGGAAATC  950
      ||||||||| | ||||||||| ||||||||||||||  ||||||||||| 
seq2  TCCATGCCTGTAAGGTTAGGAATGTGCTTGTCCTCCCTAAGTAGGAAATA  923

seq1  TCTATATTGGAATCATTCATCTGTCTGGCCTGGGACCTGGTATACCTCTT  1000
      |  || ||||||||||||||  |||     |||||| |||||| ||||||
seq2  TAGATTTTGGAATCATTCATACGTCGTCAATGGGACATGGTATCCCTCTT  973

seq1  TTGAGGGAAGTTTAGGCTTAAAGAGGGGAGGGACAATCCTAGGATCACTC  1050
      ||||||||||||| |  || |||||||||||||||||| | |||||||| 
seq2  TTGAGGGAAGTTTGGATTTTAAGAGGGGAGGGACAATCTTGGGATCACTT  1023

seq1  TTTTGGCAGGATAGGGCTGATTGGAGAGGACTTGAGTAAGAATTTTGTT  1099
      ||||||||||||||||  ||||||||||||||||||||||||| |||||
seq2  TTTTGGCAGGATAGGGGAGATTGGAGAGGACTTGAGTAAGAATATTGTT  1072