BAC Information

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BAC

Clone NameB6Ng01-006L16
Chromosome4 (Build37)
Map Location 45,616,027 - 45,688,162
singlet/doubletdoublet
Overlap geneLOC100040557
Upstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140
Downstream geneGm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006L16.bB6Ng01-006L16.g
ACCDH843510DH843511
length1,1381,014
definitionDH843510|Mus musculus domesticus DNA, BAC clone: B6Ng01-006L16, 5' end.DH843511|Mus musculus domesticus DNA, BAC clone: B6Ng01-006L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,616,027 - 45,617,203)(45,687,151 - 45,688,162)
sequence
gaattccagagtttaaggctagcttgggcactgtactggctagttttgtg
tcaacttgacacagctggagttatcacagagaaaggagcttcagttgggg
aaatgtctccacgagatccagctgtaaggcatggattagtgatcaagggg
gaaaggccccttgtgggtgaaaccatccctgggctggtagtcttgggttc
tataagagagcaggctgagcaagccaggggcagcaagccagtaaggaaca
tcccttcatggcttctgcaacagctcctgcttcctgacctgcttgagttc
cagtcctgacttccttggtgatgaacagcaatgtggaaatgtaagctgaa
taaaccctttcctccccaacttgcttcttggtcatgatgtttgtgcagga
atagaaaccctgactaagacagaaggttagtgagactgtctcataaaagg
taacacatgtctgctgtgattttggttagaattgagttgttttggcttgt
ttttttgagactgatgagccagcagggaaatggagaattttgcatcaggt
ataagctgagaggagcctagttctcgtctactctctgttctcagggttcc
caaacaattccctctggcttgtcaccacagctacttttctgggtttgagc
cagaggcaaagactctattcatggttctgacactgtgaatccctaggtgg
tatgaggacctctagaaggagtgtgctcagcctcaaagaggcagggtctg
ggcctccgggtgggaacagagctgagagccaacgattctccactgagagg
tcagtgtgttcctgtgaggggacagctatcagtatagactccaaggcaat
tgctttgctaggccttctctagtaaccacgggatggagggagtctaggct
ctcagattcatagcccataaaacatgggtgccacacacagatgaggggct
tgagctaccctgacactgtatcccagcacaccgaactctgagagagcatc
agacgagacactgtgattcagcgctggggctgacatttatgagtacagag
ccataagatcgaataaaatgattactgtttaggagcatcgtcccacctcc
ttaagagtcgctgcttactctccaaggactctgagctg
gaattccagtggctgtgatcacctgcaggagacacacgacatacagatag
gtccattgataccctgtcctgaagtctcatgagccttctctccctcctga
tgccaagtagatacttgacagatgccaaatagaaataaacccatggaaga
gtctttttgtttggttggtttgttggtttgtttttgttttttgttttgtt
ttcgagacagggtttctctatatagctctggctgtcctggaactcacttt
gtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcccg
agtgctgggattaaaggcatgcaccaccacgcccggcagaagagtcttta
agaggggaatcccttatgaaatgaggaggctgagaatcccacccgccaac
cacagtgggagccacagtccccaggaccaaagcgggggaaaagggcttag
ggaaagctgacactacaaagaagcaactgcaacatgtcatggccacaaag
aacctataccctaccagagacatgccaaagcaggaagggagcagagaggt
aataccctggcttccctctccttgcaatctctcacctcctgttacctcct
agggacctaccttcacctggtgaaccatgggaaagggcagtaccctcctt
ggggctcagcctgggaggcacagagagagattgtaatggagaaggactaa
tagtccctgccacagagacttccaagttttcccggaacctcttcccgcgc
agaccggacagtttgcgctattattttgaggtgatgggttggaaatgaca
gcgctatcattagagacgggctgaccttctctgctttctccttgatgagt
ctttgccttttagactgtcctttgctgcccgagccacttggctcagacac
aaatggtaaggctgggatgcaaagaaatgaggacacgccgccatcatcct
tttcctctcagggatggcagtgggtggtgggggaagctctcctggtggtt
gtcaactgtacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45616027_45617203
seq2: B6Ng01-006L16.b_48_1185

seq1  GAATTCCAGAGTTTAAGGCTAGCTTGGGCACTGTACTGGCTAGTTTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTTTAAGGCTAGCTTGGGCACTGTACTGGCTAGTTTTGTG  50

seq1  TCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGGGG  100

seq1  AAATGTCTCCACGAGATCCAGCTGTAAGGCATGGATTAGTGATCAAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTCCACGAGATCCAGCTGTAAGGCATGGATTAGTGATCAAGGGG  150

seq1  GAAAGGCCCCTTGTGGGTGAAACCATCCCTGGGCTGGTAGTCTTGGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCCCTTGTGGGTGAAACCATCCCTGGGCTGGTAGTCTTGGGTTC  200

seq1  TATAAGAGAGCAGGCTGAGCAAGCCAGGGGCAGCAAGCCAGTAAGGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGAGCAGGCTGAGCAAGCCAGGGGCAGCAAGCCAGTAAGGAACA  250

seq1  TCCCTTCATGGCTTCTGCAACAGCTCCTGCTTCCTGACCTGCTTGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCATGGCTTCTGCAACAGCTCCTGCTTCCTGACCTGCTTGAGTTC  300

seq1  CAGTCCTGACTTCCTTGGTGATGAACAGCAATGTGGAAATGTAAGCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGACTTCCTTGGTGATGAACAGCAATGTGGAAATGTAAGCTGAA  350

seq1  TAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGA  400

seq1  ATAGAAACCCTGACTAAGACAGAAGGTTAGTGAGACTGTCTCATAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACCCTGACTAAGACAGAAGGTTAGTGAGACTGTCTCATAAAAGG  450

seq1  TAACACATGTCTGCTGTGATTTTGGTTAGAATTGAGTTGTTTTGGCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATGTCTGCTGTGATTTTGGTTAGAATTGAGTTGTTTTGGCTTGT  500

seq1  TTTTTTGAGACTGATGAGCCAGCAGGGAAATGGAGAATTTTGCATCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACTGATGAGCCAGCAGGGAAATGGAGAATTTTGCATCAGGT  550

seq1  ATAAGCTGAGAGGAGCCTAGTTCTCGTCTACTCTCTGTTCTCAGGGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTGAGAGGAGCCTAGTTCTCGTCTACTCTCTGTTCTCAGGGTTCC  600

seq1  CAAACAATTCCCTCTGGCTTGTCACCACAGCTACTTTTCTGGGTTTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATTCCCTCTGGCTTGTCACCACAGCTACTTTTCTGGGTTTGAGC  650

seq1  CAGAGGCAAAGACTCTATTCATGGTTCTGACACTGTGAATCCCTAGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAAAGACTCTATTCATGGTTCTGACACTGTGAATCCCTAGGTGG  700

seq1  TATGAGGACCTCTAGAAGGAGTGTGCTCAGCCTCAAAGAGGCAGGGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGACCTCTAGAAGGAGTGTGCTCAGCCTCAAAGAGGCAGGGTCTG  750

seq1  GGCCTCCGGGTGGGAACAGAGCTGAGAGCCAACGATTCTCCACTGAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCGGGTGGGAACAGAGCTGAGAGCCAACGATTCTCCACTGAGAGG  800

seq1  TCAGTGTGTTCCTGTGAGGGGACAGCTATCAGTATAGACTCCAAGGCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGTTCCTGTGAGGGGACAGCTATCAGTATAGACTCCAAGGCAAT  850

seq1  TGCTTTGCTAGGCCTTCTCTAGTAACCACGGGATGGAGGGAGTCTAGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCTAGGCCTTCTCTAGTAACCACGGGATGGAGGGAGTCTAGGCT  900

seq1  CTCAGGATTCATAGCCCATAAAAACATGGGTGCCACACACAAGATGAAGG  950
      |||| |||||||||||||| |||||||||||||||||||| ||||| |||
seq2  CTCA-GATTCATAGCCCAT-AAAACATGGGTGCCACACAC-AGATG-AGG  946

seq1  GGCTTGAAGCTACCCTGACACTGTAATTCCCAGCACAACCGGAACTCTGA  1000
      |||||| ||||||||||||||||||  ||||||||||  | |||||||||
seq2  GGCTTG-AGCTACCCTGACACTGTA--TCCCAGCACA--CCGAACTCTGA  991

seq1  GAAGAGCCATTCAGGACGAGACACTGTGATTCAGCGCCTGGGGGCTTGGA  1050
      | |||||   ||| |||||||||||||||||||||||   ||||||  ||
seq2  G-AGAGC--ATCA-GACGAGACACTGTGATTCAGCGC--TGGGGCT--GA  1033

seq1  CATTTAATGAGGTACCAGGAGCCCATAAAGATTCAGATAAGAATGATTTA  1100
      ||||| |||| ||||   ||| |||| |||| ||  |||| |||||||  
seq2  CATTT-ATGA-GTAC--AGAG-CCAT-AAGA-TCGAATAA-AATGATT--  1073

seq1  CCTGTTTAGGATGCCCAATCGGTCCCACACCTCCTTTAAAGGATGCTGCT  1150
       |||||||||| ||   ||| ||||  ||||||| ||||  |  ||||||
seq2  ACTGTTTAGGA-GC---ATC-GTCC--CACCTCC-TTAAGAGTCGCTGCT  1115

seq1  GCTACTTCTCCAAAGACTTCTGAGCTG  1177
        ||| ||||||| ||| |||||||||
seq2  --TAC-TCTCCAAGGAC-TCTGAGCTG  1138

seq1: chr4_45687151_45688162
seq2: B6Ng01-006L16.g_68_1081 (reverse)

seq1  CCTGTACAGTTGACAACCA-CAGGAGAGCCTCCCC--ACACCCACTGCCA  47
      ||||||||||||||||||| ||||||||| |||||   ||||||||||||
seq2  CCTGTACAGTTGACAACCACCAGGAGAGCTTCCCCCACCACCCACTGCCA  50

seq1  TCCCTGAGAGGAAAGGGTTGATGGCGGCGTGTCCTCATTTCTCTGCATCC  97
      |||||||||||||| || |||||||||||||||||||||||| |||||||
seq2  TCCCTGAGAGGAAAAGGATGATGGCGGCGTGTCCTCATTTCTTTGCATCC  100

seq1  CAGCTTTACCATTTGTGTCTGAGCCAAGTGGCTCGGGCAGCCACAAGAAC  147
      |||| ||||||||||||||||||||||||||||||||||||   ||| ||
seq2  CAGCCTTACCATTTGTGTCTGAGCCAAGTGGCTCGGGCAGC--AAAGGAC  148

seq1  AGTCTAAAAGGCAAAGACTCATCAAGGAGAAAGCAGAGAAGGTCAGCCCG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAAGGCAAAGACTCATCAAGGAGAAAGCAGAGAAGGTCAGCCCG  198

seq1  TCTCTAATGATAGCGCTGTCATTTCCAACCCATCACCTCAAAATAATAGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATGATAGCGCTGTCATTTCCAACCCATCACCTCAAAATAATAGC  248

seq1  GC-AACTGTCCGGTCTGCGCGGGAAGAGGTTCCGGGAAAACTTGGAAGTC  296
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGTCCGGTCTGCGCGGGAAGAGGTTCCGGGAAAACTTGGAAGTC  298

seq1  TCTGTGGCAGGGACTATTAGTCCTTCTCCATTACAATCTCTCTCTGTGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCAGGGACTATTAGTCCTTCTCCATTACAATCTCTCTCTGTGCC  348

seq1  TCCCAGGCTGAGCCCCAAGGAGGGTACTGCCCTTTCCCATGGTTCACCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCTGAGCCCCAAGGAGGGTACTGCCCTTTCCCATGGTTCACCAG  398

seq1  GTGAAGGTAGGTCCCTAGGAGGTAACAGGAGGTGAGAGATTGCAAGGAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGTAGGTCCCTAGGAGGTAACAGGAGGTGAGAGATTGCAAGGAGA  448

seq1  GGGAAGCCAGGGTATTACCTCTCTGCTCCCTTCCTGCTTTGGCATGTCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCAGGGTATTACCTCTCTGCTCCCTTCCTGCTTTGGCATGTCTC  498

seq1  TGGTAGGGTATAGGTTCTTTGTGGCCATGACATGTTGCAGTTGCTTCTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGGTATAGGTTCTTTGTGGCCATGACATGTTGCAGTTGCTTCTTT  548

seq1  GTAGTGTCAGCTTTCCCTAAGCCCTTTTCCCCCGCTTTGGTCCTGGGGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTCAGCTTTCCCTAAGCCCTTTTCCCCCGCTTTGGTCCTGGGGAC  598

seq1  TGTGGCTCCCACTGTGGTTGGCGGGTGGGATTCTCAGCCTCCTCATTTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCCCACTGTGGTTGGCGGGTGGGATTCTCAGCCTCCTCATTTCA  648

seq1  TAAGGGATTCCCCTCTTAAAGACTCTTCTGCCGGGCGTGGTGGTGCATGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGATTCCCCTCTTAAAGACTCTTCTGCCGGGCGTGGTGGTGCATGC  698

seq1  CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGA  748

seq1  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTATATAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTATATAGA  798

seq1  GAAACCCTGTCTCGAAAACAAAACAAAAAACAAAAACAAACCAACAAACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCGAAAACAAAACAAAAAACAAAAACAAACCAACAAACC  848

seq1  AACCAAACAAAAAGACTCTTCCATGGGTTTATTTCTATTTGGCATCTGTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACAAAAAGACTCTTCCATGGGTTTATTTCTATTTGGCATCTGTC  898

seq1  AAGTATCTACTTGGCATCAGGAGGGAGAGAAGGCTCATGAGACTTCAGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTACTTGGCATCAGGAGGGAGAGAAGGCTCATGAGACTTCAGGA  948

seq1  CAGGGTATCAATGGACCTATCTGTATGTCGTGTGTCTCCTGCAGGTGATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATCAATGGACCTATCTGTATGTCGTGTGTCTCCTGCAGGTGATC  998

seq1  ACAGCCACTGGAATTC  1012
      ||||||||||||||||
seq2  ACAGCCACTGGAATTC  1014