BAC Information

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BAC

Clone NameB6Ng01-007A17
Chromosome4 (Build37)
Map Location 68,238,125 - 68,239,138
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433715, Tcp1-ps1
Downstream geneDbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007A17.bB6Ng01-007A17.g
ACCDH843735DH843736
length1,2311,010
definitionDH843735|Mus musculus domesticus DNA, BAC clone: B6Ng01-007A17, 5' end.DH843736|Mus musculus domesticus DNA, BAC clone: B6Ng01-007A17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacatggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaactcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccgccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaggaataaacaggctgagaaagaaattag
ggaaacaacacccttttcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaacttcaagtctc
tgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgc
tcatggattggcatgatcaacattgtaaaaatggctatcttgccaaaagc
aatctacagattcaatgcaatccccatcaaaattccaactcatttctcca
atgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacct
aggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcac
catgcctgacttaaagcttttctacagagcaattgtgataaaaactgcat
ggtactggtatagagacagacaagtagaccaatggaatagaattgaagac
ccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagc
taaaaccatccagtggaagaaagacagaattttcaacaatggtgctggca
ccaactggttgtatcatgtagaagaatgcgaattgatcatattatcttct
gtactaagtcaaatctaagtggatcaggaacttcataaatcagagaactg
aaacttattgagggagaaaggtgggaaagtctcgaagatttgcataaggg
aaaattctggaatgaaagtaatgccttgtgccgagatctagaattgcaaa
ttggactaatgaaactcagttcgcagccaagactcggcattagataaaag
cactcacacagttgggcaagagatcttcatt
gaattctctctatggagggtgagagcagaacatgtttttgggcatgaaga
aaaatattgagaaggcatttttacagcatggttggtatgctcatgcttca
ttgtgtatgtgtgtgaaattcttaattatagagaaaattgatatgagaat
gaaaaggtgtgcatgatctaaattacatctgaaaaatccataaactaata
tcaattacagtcaatatatgaatagtaattgccaagtattagatgtctta
catattaatgcaacaaacctcacaaggaaatccagttattcttttaggaa
tgagttaagcaaacacacagaagagttgagtatttgcctgatgtcctgag
gttaataaatgacaggattgggaattgaagtaagctgtatcacagacatc
acagttgtaactactgtgctgtgctgattaacagccatgaaactgcaaat
acctttcttttctatatggatttgttttagagaccatgttgtagaactct
gactagaagatggaatattatcttggaaagacatatatgtcagtaactgt
gtcatcactgtaacttcagtatctgacaaaaacattctttaagaggtaag
atttttttctcatgcaacatagacagggaaaatacaatgcaagaactatg
taactggtgttgtgtgtgtgtgctacagaaggaagagagtggaacagaga
atagggggtggtgtcttgggtataaccttcaaatctgcatatccactttt
gtacttgttgacccacccttatcattgaaatgaaaatgtattctatcacc
gaaaggaaatgatccttgggctatggaattcagattcaaactataacaac
actccaactatcataccaaagagatcctagattttccacaggaaaaacat
tctgcaacaatgtacattgtcttagtgataacaacagtgaaagtacttat
gtttcttcatatgtttctaagatgcctgttacaacctatatggaaatata
tcatatataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_68238125_68239138
seq2: B6Ng01-007A17.g_65_1074 (reverse)

seq1  TTATATATAGAATATATTTACATATAGTTGCTAACAGGGCATCTAGGAAC  50
      ||||||||   |||||||| ||||||| |  ||||| |||||||  ||| 
seq2  TTATATAT--GATATATTTCCATATAGGTTGTAACA-GGCATCTTAGAAA  47

seq1  AATATGAAG-AACATAGGTAC-TTCACTGTTGTTATCACTAAGAACAATG  98
       |||||||| |||||| |||| ||||||||||||||||||||| ||||||
seq2  CATATGAAGAAACATAAGTACTTTCACTGTTGTTATCACTAAG-ACAATG  96

seq1  TACATTGTTGCAGAATGTTTTTCCTGTGGAAAATCTGGGTTCTCTTTTGG  148
      |||||||||||||||||||||||||||||||||||| || |||| |||||
seq2  TACATTGTTGCAGAATGTTTTTCCTGTGGAAAATCTAGGATCTC-TTTGG  145

seq1  TATGATAGTTGGAGTGTTGTTATAGTTTGAATCTGAAATTCCATAGCCCA  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATGATAGTTGGAGTGTTGTTATAGTTTGAATCTG-AATTCCATAGCCCA  194

seq1  AGGATCATTTTCCTTTCGGTGATAGAATACATTTTCATTTCAATGATAAG  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCA-TTTCCTTTCGGTGATAGAATACATTTTCATTTCAATGATAAG  243

seq1  GGTGGGTCAACAAGTACAAAAGTGGATATGCAGATTTGAAGGTTATA-CC  297
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTGGGTCAACAAGTACAAAAGTGGATATGCAGATTTGAAGGTTATACCC  293

seq1  AAGACACCACCCCCTATTCTCTGTTCCACTCTCTTCCTTCTGTAGCACAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACCACCCCCTATTCTCTGTTCCACTCTCTTCCTTCTGTAGCACAC  343

seq1  ACACACAACACCAGTTACATAGTTCTTGCATTGTATTTTCCCTGTCTATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAACACCAGTTACATAGTTCTTGCATTGTATTTTCCCTGTCTATG  393

seq1  TTGCATGAGAAAAAAATCTTACCTCTTAAAGAATGTTTTTGTCAGATACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGAGAAAAAAATCTTACCTCTTAAAGAATGTTTTTGTCAGATACT  443

seq1  GAAGTTACAGTGATGACACAGTTACTGACATATATGTCTTTCCAAGATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTACAGTGATGACACAGTTACTGACATATATGTCTTTCCAAGATAA  493

seq1  TATTCCATCTTCTAGTCAGAGTTCTACAACATGGTCTCTAAAACAAATCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATCTTCTAGTCAGAGTTCTACAACATGGTCTCTAAAACAAATCC  543

seq1  ATATAGAAAAGAAAGGTATTTGCAGTTTCATGGCTGTTAATCAGCACAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAAAGAAAGGTATTTGCAGTTTCATGGCTGTTAATCAGCACAGC  593

seq1  ACAGTAGTTACAACTGTGATGTCTGTGATACAGCTTACTTCAATTCCCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGTTACAACTGTGATGTCTGTGATACAGCTTACTTCAATTCCCAA  643

seq1  TCCTGTCATTTATTAACCTCAGGACATCAGGCAAATACTCAACTCTTCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCATTTATTAACCTCAGGACATCAGGCAAATACTCAACTCTTCTG  693

seq1  TGTGTTTGCTTAACTCATTCCTAAAAGAATAACTGGATTTCCTTGTGAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGCTTAACTCATTCCTAAAAGAATAACTGGATTTCCTTGTGAGG  743

seq1  TTTGTTGCATTAATATGTAAGACATCTAATACTTGGCAATTACTATTCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCATTAATATGTAAGACATCTAATACTTGGCAATTACTATTCAT  793

seq1  ATATTGACTGTAATTGATATTAGTTTATGGATTTTTCAGATGTAATTTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGACTGTAATTGATATTAGTTTATGGATTTTTCAGATGTAATTTAG  843

seq1  ATCATGCACACCTTTTCATTCTCATATCAATTTTCTCTATAATTAAGAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCACACCTTTTCATTCTCATATCAATTTTCTCTATAATTAAGAAT  893

seq1  TTCACACACATACACAATGAAGCATGAGCATACCAACCATGCTGTAAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACACATACACAATGAAGCATGAGCATACCAACCATGCTGTAAAAA  943

seq1  TGCCTTCTCAATATTTTTCTTCATGCCCAAAAACATGTTCTGCTCTCACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTCAATATTTTTCTTCATGCCCAAAAACATGTTCTGCTCTCACC  993

seq1  CTCCATAGAGAGAATTC  1014
      |||||||||||||||||
seq2  CTCCATAGAGAGAATTC  1010