BAC Information

Click to search

BAC

Clone NameB6Ng01-007B22
Chromosome4 (Build37)
Map Location 54,209,745 - 54,210,937
singlet/doubletsinglet
Overlap genenone
Upstream gene4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007B22.b
ACCDH843788
length1,186
definitionDH843788|Mus musculus domesticus DNA, BAC clone: B6Ng01-007B22, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttggatacacggggtatcgaacgtgtctcttctttagtaatctt
cccacccaaacccattttagaaaagtgttgctatgaagctgcttaatttg
ctttagaagctgtgccactggatcttaatccttatatggatgatgtttga
atgattgtgtgttttccccagctggctgaagagttatgctggaggctaaa
cacatgtattgcaatggttgatgttcctgactgaggggatctgggttcaa
ctgctggctctgacatcaaatcttggggggtctgaatgaggtgggagaag
aaatccagacatagagatatttatctttcccaagggttcataggcccacc
acttacagcctctcatatagctgatattaacctcagaagcttgcaatatg
ttacactattagcatagtgagaaaaccagaacaagaacaaggaaaaggaa
agaaaaaagcatctctcatctcccttcctgacttcttccctaccttcagc
tcttgttctctcccttccttctccctattttccttgttctctgggagaaa
agctcaattccatcctcattggaaaagggttttatctactccctgaatga
atcaagaagcagtatgcttctattacaggcaataatttcctatatcattg
tccttcatgagtattgtaatatcttttaaatggaaaaattttgtttcttt
tagtaaaaacaattcattgggtagctactgtatgcccaatataatgcttt
attgttcataatctacattatgtatcattaacatttaacataattataac
attatttattaacacatgttcattaattaacattaatcgttagcatcatt
ctagaatgtgtattttatcattcttgtttgttcctgactcagcccatgac
attgatgtagagtaatgcgtagaccagggaagcaaaccacaagtcatgat
atcaaggatgggaaccctgggggcaagtggggatcactcttgttggacag
gcctgggagcttggtatggcattaagtacctctggagtcatcctagaggt
agcagatggaatattgctactatcagtacatgtggcattcttcaagaaat
ccttgccaaggttagttttacgtactgtgaggcctgccgataaattctta
ataaaggcatcatttgagactcagggagatctatat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_54209745_54210937
seq2: B6Ng01-007B22.b_67_1228

seq1  GAACATGTCTCTTCTTTTGTAAGTAATACCACCAGAAGTGATTTTAGATT  50
      |||| |||||||||||| |||| |  | |||||  ||   ||||||||  
seq2  GAACGTGTCTCTTCTTTAGTAA-TCTTCCCACCCAAACCCATTTTAGAAA  49

seq1  TTTGTTGCTATAGAAACCTCAGAAAGTACATTAACGTCAATGCAAAGGCA  100
        ||||||||| ||| |  |  ||  | | |||    |  ||| |  | |
seq2  AGTGTTGCTAT-GAAGCTGCTTAATTTGCTTTAGAAGCTGTGCCACTGGA  98

seq1  TCTTATTCCTTAAAAATTTCATGTTTGAATGATTTAAATGTAGGTCCCAG  150
      ||||| |||||| |    | |||||||||||| ||   |||    |||||
seq2  TCTTAATCCTTATATGGATGATGTTTGAATGA-TTGTGTGTTTTCCCCAG  147

seq1  CTGGGTGATTAAATGTGTTTGACAGGC-AAGCA-GTATATTGTAGTGGTT  198
      |||| |||  |  | || | |  |||| || ||  | ||||| | |||||
seq2  CTGGCTGAAGAGTTATGCTGG--AGGCTAAACACATGTATTGCAATGGTT  195

seq1  AAATATGTAGACTTTAGATGCCTGGGTTCAACTGCTGGCTCTGTCACAAA  248
       |   |   ||||   |    |||||||||||||||||||||| ||  ||
seq2  GATGTTCCTGACTGAGGGGATCTGGGTTCAACTGCTGGCTCTGACATCAA  245

seq1  AGCATGTGTGACTCTGAATGATTCAGAGGAAGAAATCAAGACATAGAGAT  298
      | | || | |  |||||||||    |  ||||||||| ||||||||||||
seq2  ATCTTG-GGGGGTCTGAATGAGGTGGGAGAAGAAATCCAGACATAGAGAT  294

seq1  ATTTATCTTTCCCAAGGGTTCATAGGCCCACCACTTACAGCCTCTCATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTTTCCCAAGGGTTCATAGGCCCACCACTTACAGCCTCTCATAT  344

seq1  AGCTGATATTAACCTCAGAAGCTTGCAATATGTTACACTATTAGCATAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATATTAACCTCAGAAGCTTGCAATATGTTACACTATTAGCATAGT  394

seq1  GAGAAAACCAGAACAAGAACAAGGAAAAGGAAAGAAAAAAGCATCTCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACCAGAACAAGAACAAGGAAAAGGAAAGAAAAAAGCATCTCTCA  444

seq1  TCTCCCTTCCTGACTTCTTCCCTACCTTCAGCTCTTGTTCTCTCCCTTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTCCTGACTTCTTCCCTACCTTCAGCTCTTGTTCTCTCCCTTCC  494

seq1  TTCTCCCTATTTTCCTTGTTCTCTGGGAGAAAAGCTCAATTCCATCCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTATTTTCCTTGTTCTCTGGGAGAAAAGCTCAATTCCATCCTCA  544

seq1  TTGGAAAAGGGTTTTATCTACTCCCTGAATGAATCAAGAAGCAGTATGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAGGGTTTTATCTACTCCCTGAATGAATCAAGAAGCAGTATGCT  594

seq1  TCTATTACAGGCAATAATTTCCTATATCATTGTCCTTCATGAGTATTGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTACAGGCAATAATTTCCTATATCATTGTCCTTCATGAGTATTGTA  644

seq1  ATATCTTTTAAATGGAAAAATTTTGTTTCTTTTAGTAAAAACAATTCATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTAAATGGAAAAATTTTGTTTCTTTTAGTAAAAACAATTCATT  694

seq1  GGGTAGCTACTGTATGCCCAATATAATGCTTTATTGTTCATAATCTACAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCTACTGTATGCCCAATATAATGCTTTATTGTTCATAATCTACAT  744

seq1  TATGTATCATTAACA-TTAACATAATTATAACATTATTTATTAACACATG  797
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATGTATCATTAACATTTAACATAATTATAACATTATTTATTAACACATG  794

seq1  TTCATTAATTAACATTAATCGTTAGCATCATTCTAGAATGTGTATTTTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAATTAACATTAATCGTTAGCATCATTCTAGAATGTGTATTTTAT  844

seq1  CATTCTTGTTTGTTCCTGACTCAGCCCATGACATTGATGTAAGAGTAATG  897
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATTCTTGTTTGTTCCTGACTCAGCCCATGACATTGATGT-AGAGTAATG  893

seq1  CGTAGACCAGGGAAGCAAACCACAAAGTCATGATATCAAGGATGGGAACC  947
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CGTAGACCAGGGAAGCAAACCAC-AAGTCATGATATCAAGGATGGGAACC  942

seq1  CT-GGGGCAAGTGGGGATCACTCTTGTTGGACAGGCCTGGGAGC-TGGTA  995
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGGGGGCAAGTGGGGATCACTCTTGTTGGACAGGCCTGGGAGCTTGGTA  992

seq1  TGGCATT-AGTACCTCT-GAGTCATCCTAAGAGGTAGCAGAATGGAATA-  1042
      ||||||| ||||||||| |||||||||| ||||||||||| |||||||| 
seq2  TGGCATTAAGTACCTCTGGAGTCATCCT-AGAGGTAGCAG-ATGGAATAT  1040

seq1  TGCTACATACAAGTTACCATTGTGCATTGGTTCAAAGAAATACTCTGGCA  1092
      |||||| ||  |||   |||   |||||  ||| ||||||| || || ||
seq2  TGCTAC-TATCAGT--ACATGTGGCATT-CTTC-AAGAAATCCT-TGCCA  1084

seq1  CATGTTAATTTTCACGTACTTGTGAGGACTTGCAGATAAATTCTTAGATA  1142
       | |||| |||| |||||| ||||||| | ||| |||||||||||| || 
seq2  -AGGTTAGTTTT-ACGTAC-TGTGAGG-CCTGCCGATAAATTCTTA-AT-  1128

seq1  AAATGCATCATTTTTGAGGACTCAAAGGAAGATACTATTAATTATCTATA  1192
      ||| ||||||  ||||| |||||  ||| ||            |||||||
seq2  AAAGGCATCA--TTTGA-GACTC--AGGGAG------------ATCTATA  1161

seq1  T  1193
      |
seq2  T  1162