BAC Information

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BAC

Clone NameB6Ng01-007G20
Chromosome4 (Build37)1 (Build37)
Map Location 116,621,190 - 116,621,32553,068,185 - 53,068,946
singlet/doubletsingletsinglet
Overlap geneZswim5
Upstream geneFaah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048
Downstream geneUrod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007G20.bB6Ng01-007G20.g
ACCDH843999DH844000
length577762
definitionDH843999|Mus musculus domesticus DNA, BAC clone: B6Ng01-007G20, 5' end.DH844000|Mus musculus domesticus DNA, BAC clone: B6Ng01-007G20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,621,190 - 116,621,325)(53,068,185 - 53,068,946)
sequence
ttcacttccttgatttttttctttgaggctatagtgactagaggtatgtt
cattatttcctgctctgaatgtttgatgttcatgtatagttaggctgttg
gtttgtgaagattgtttctgtattctaccacactgctaaatctgtttacc
atttctagacttttttgccagaatttttaggatctctaagatatagtagt
atcatgttatctacagatggggataatttgacttctttccgtatttgtat
ccctttaatttccttctcttgctttattgctcctgctatttctttgagca
tggtgtggaaagggaatagatgtagtgggcctccctgtcccattttttat
ttcagtgggatcacgtcaagcttttctccatttagaataatgttggtttt
tcctgttgttgttgttgttgttgttgttgttgttgttgttgtttttcgag
acagggtttctctgtgtagctctggctgtcctggaactcactctgtagac
catgctggcctttgaactcagaaatccacctgcctctgcctcccaagtgc
tgggatcaaaggcgtgctccaccaccg
gaattcagttgatgccatggaaatttttggcaattctgagcaccatttca
tactgtgagatttttatctgaaacactgcaagattttaaagagtaatttt
ccatttcctccagtgcagcactaccttcctgggctaatatgcccttccta
tgtgacctctgtgggaccagacagactggctttgggcttttatcatgttt
tctccaggtctcatcaagccctatccactggtttaaaacatgtagttctt
ggtgaagatctttagatgttcagggacaaggatgaagcagggacagagag
aatggccaaccaatgactggcccaaattgatacccatcccatgggcaagc
accaatccctatcactagtagtgatactctgttatgcttgtagacaggag
tctgtcttttgagaggctccatccagcagctaaccagaacagatgcagag
aaccagaggcaaacactggagggagcttggggagccttgtcgaagagttg
agggaatgactgggaaacctgaagaggatcgagactccacaggaagatca
acagaatcaactaatctggacccttggggactcccagagactgaactatc
aaccaaagagcaagcatggctggtacaagttgcacatatgtagcagatgt
acagcttggtcttcatgtgagtcccccaacaactagagtggggggatgtc
cctgaatctgttgcctatttgtcccctaactgagcccccttgtctgacct
caatgggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_116621190_116621325
seq2: B6Ng01-007G20.b_488_624 (reverse)

seq1  CGGTGGTGGCGCATGCCTTTGATCCCAGCACTTGGGAGGCAGAGACAGGC  50
      ||||||||| ||| |||||||||||||||||||||||||||||| |||| 
seq2  CGGTGGTGGAGCACGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGT  50

seq1  GGATTTCTGAGTTC-GAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC  99
      ||||||||||||||  |||||||| ||||||||| |||||||||||||||
seq2  GGATTTCTGAGTTCAAAGGCCAGCATGGTCTACAGAGTGAGTTCCAGGAC  100

seq1  AGCTAAGACTATACAGAGAAACCCTGTCTCGAAAAAC  136
      ||| |   ||| |||||||||||||||||||||||||
seq2  AGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAAC  137

seq1: chr1_53068185_53068946
seq2: B6Ng01-007G20.g_66_827

seq1  GAATTCAGTTGATGCCATGGAAATTTTTGGCAATTCTGAGCACCATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGATGCCATGGAAATTTTTGGCAATTCTGAGCACCATTTCA  50

seq1  TACTGTGAGATTTTTATCTGAAACACTGCAAGATTTTAAAGAGTAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGAGATTTTTATCTGAAACACTGCAAGATTTTAAAGAGTAATTTT  100

seq1  CCATTTCCTCCAGTGCAGCACTACCTTCCTGGGCTAATATGCCCTTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTCCAGTGCAGCACTACCTTCCTGGGCTAATATGCCCTTCCTA  150

seq1  TGTGACCTCTGTGGGACCAGACAGACTGGCTTTGGGCTTTTATCATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTCTGTGGGACCAGACAGACTGGCTTTGGGCTTTTATCATGTTT  200

seq1  TCTCCAGGTCTCATCAAGCCCTATCCACTGGTTTAAAACATGTAGTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGTCTCATCAAGCCCTATCCACTGGTTTAAAACATGTAGTTCTT  250

seq1  GGTGAAGATCTTTAGATGTTCAGGGACAAGGATGAAGCAGGGACAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGATCTTTAGATGTTCAGGGACAAGGATGAAGCAGGGACAGAGAG  300

seq1  AATGGCCAACCAATGACTGGCCCAAATTGATACCCATCCCATGGGCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCAACCAATGACTGGCCCAAATTGATACCCATCCCATGGGCAAGC  350

seq1  ACCAATCCCTATCACTAGTAGTGATACTCTGTTATGCTTGTAGACAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCCCTATCACTAGTAGTGATACTCTGTTATGCTTGTAGACAGGAG  400

seq1  TCTGTCTTTTGAGAGGCTCCATCCAGCAGCTAACCAGAACAGATGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTTGAGAGGCTCCATCCAGCAGCTAACCAGAACAGATGCAGAG  450

seq1  AACCAGAGGCAAACACTGGAGGGAGCTTGGGGAGCCTTGTCGAAGAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGGCAAACACTGGAGGGAGCTTGGGGAGCCTTGTCGAAGAGTTG  500

seq1  AGGGAATGACTGGGAAACCTGAAGAGGATCGAGACTCCACAGGAAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGACTGGGAAACCTGAAGAGGATCGAGACTCCACAGGAAGATCA  550

seq1  ACAGAATCAACTAATCTGGACCCTTGGGGACTCCCAGAGACTGAACTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCAACTAATCTGGACCCTTGGGGACTCCCAGAGACTGAACTATC  600

seq1  AACCAAAGAGCAAGCATGGCTGGTACAAGTTGCACATATGTAGCAGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGAGCAAGCATGGCTGGTACAAGTTGCACATATGTAGCAGATGT  650

seq1  ACAGCTTGGTCTTCATGTGAGTCCCCCAACAACTAGAGTGGGGGGATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGGTCTTCATGTGAGTCCCCCAACAACTAGAGTGGGGGGATGTC  700

seq1  CCTGAATCTGTTGCCTATTTGTCCCCTAACTGAGCCCCCTTGTCTGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCTGTTGCCTATTTGTCCCCTAACTGAGCCCCCTTGTCTGACCT  750

seq1  CAATGGGAGAGG  762
      ||||||||||||
seq2  CAATGGGAGAGG  762