BAC Information

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BAC

Clone NameB6Ng01-007M20
Chromosome4 (Build37)
Map Location 18,072,355 - 18,098,283
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040173, Mmp16
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007M20.bB6Ng01-007M20.g
ACCDH844264DH844265
length1,1421,099
definitionDH844264|Mus musculus domesticus DNA, BAC clone: B6Ng01-007M20, 5' end.DH844265|Mus musculus domesticus DNA, BAC clone: B6Ng01-007M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,097,146 - 18,098,283)(18,072,355 - 18,073,456)
sequence
gaattcttgctctaaccattctggccctatgcctctgttctcccctagaa
ttcccagaaagcaaagaatggctgttgcatacccagccacatgctgtgtc
ctgctttctgctgccaactgctttttgaaaaacctatttttgatttgtat
ttagagctggaagactaggtagagttgtggaaatgtagtatttacaattc
caatcttgcagttttaaatataggaactgtttacatgaagcagattttta
aagaaatttctgaatctgtgcagatcactcattggtaaagatatgaaagt
taaaaatatgaaaggtgggtcattcgaatatcatattcagctttctatca
taatataatttttattagagatttttattttctaagtaagccataaaagt
tgctcaaatttttacattccttcatttaaaacttccttttcattgccagt
catgtaaagaattggagttttgtttaaccacttggagtggttattattag
cacagtccactaaaacctggtgtttaccttctcaaagagacaaacgcagc
agtgttgaaatgttctcttgatttgaattgaaagattttgaggtaattag
gacctagtgtgtttagttggagtcagaggcatctgtctgcacattcattc
tgtaggatgttgcctataaagaaaatgaaaaccatttagcagtgatgttt
tttggggtccattactaaaattgtaacactgatgtcaattcatgaaaacg
gttttgaaatacaggatggaagaatctgcttcctgattggcgaagattca
cgagaggaagaacactggcacattcacatccataaactccaagtgcaact
gatgtgtcatttagatttgtgcagtccaggaaagccatgggttgctgaca
atgaatttcattagaactttctttttctacagccaataggcataggaaaa
aaaatgaaacgttttctggcagttcttcagtgttgatggaagaatcaaag
tgggctttcattggctggtggtaaaggagcacctttgttttgggttctaa
ctgtctgaacatggtcatttgaaatcaatataggtggtgggttcttagaa
atccaagggagttgttttaaatcatcagcttgacagaaggaa
gaattcacctcgaaaagttcaaaaacattacagaaggaaagataacagtg
ggtcacaatgaggtgaggctagtaggtgtgggaagacacacagagccagc
aaaccatcagtgggtgcagaaggttgagcattataattctgtcatgtgct
tttggtgtatatggtctcatatcatcactcacaccaaacgttactgacaa
caaccaggaagtagcagccactttggttgataacaaaataacaaaatgat
aaaattgacacagcaaatagtttgatgtatactttttgataagatgtact
cagaatgaaaaatagtagtactcgtggcaactataacctgagcctaagca
tgaagaacaacagtattgaatgtggtttcagtgtccttgccaggatctac
cttgagttttcatacgtgattattctagtgatggggcctcatttagtgtt
ttatttgtttattttctttatttacatttcaaatgttatcccctttcctg
gtttcccctcctaaaaccccatatccctccccgccccccccagctcacca
acatacccactcctaattcctaatcctggaattcccctacactccagcat
agagccttcacaggaccaagggcctctcctcccattgatgactgactagg
ccatcttctgctacatattcagcaggagccatgagtcctaccatgtgtac
tctttggttggtggtttagtcccagggagatctggagttactggttggtt
catattgttgttcctcctatggggctgcaaagctcttcaggtccttgagt
acttttctctagcttcttcattgggggacccaatgggatggctgtgagca
tccacttctgtatttgtcaggcacaggcagagccctttcagaaaacaact
atatcaggctcctgtcagcaagcacttgttggcatcaacaataattgtct
gggtttggtgattgtaaatggatggatccccagtgtgcctgtccaacttg
gagggcaactcttgatgtagtttaatcttttctagttcttatgggaaact
atcagaagagcttgactgattttagactccatttctttttggaatacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18097146_18098283
seq2: B6Ng01-007M20.b_47_1188 (reverse)

seq1  TTCC-TCTGTTCAAGCTGATGTATTAACAAACAACT-CCTCTGATTTCCT  48
      |||| |||| |||||||||||  |||  |||||||| |||  ||||||  
seq2  TTCCTTCTG-TCAAGCTGATGATTTA--AAACAACTCCCTTGGATTTCTA  47

seq1  AGAACACA-CACCTATATTGATTTTCAAAATGACCATGTTCAGGCAGTTA  97
      ||||| || |||||||||||||||   |||||||||||||||| ||||||
seq2  AGAACCCACCACCTATATTGATTT--CAAATGACCATGTTCAGACAGTTA  95

seq1  GAACCCAAAACAAA-GTGCTCCTTTTACCACCAGCCCATTGAAGGCCACT  146
      |||||||||||||| ||||||| ||||||||||||| ||  ||| |||||
seq2  GAACCCAAAACAAAGGTGCTCC-TTTACCACCAGCCAATGAAAGCCCACT  144

seq1  TTGATTCTTCCATCAACACTG-AGAACTGCCAG-AAACGTTTCATTTTTT  194
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTGATTCTTCCATCAACACTGAAGAACTGCCAGAAAACGTTTCATTTTTT  194

seq1  TTCCTATGCCTATTGGCTGTAGAAAA--GAAGTTCTAATG-AATTCATTG  241
      ||||||||||||||||||||||||||   ||||||||||| |||||||||
seq2  TTCCTATGCCTATTGGCTGTAGAAAAAGAAAGTTCTAATGAAATTCATTG  244

seq1  TCAGCAA-CCATGGCTTTCCTGGACTGCACAAATCTAAATGACACATCAG  290
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAACCCATGGCTTTCCTGGACTGCACAAATCTAAATGACACATCAG  294

seq1  TTGCACTTGGAGTTTATGGATGTGAATGTGCCAGTGTTCTTCCTCTCCTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGCACTTGGAGTTTATGGATGTGAATGTGCCAGTGTTCTTCCTCTCGTG  344

seq1  AATCTTCGCCAATCAGGAAGCAGATTCTTCCATCCTGTATTTCAAAACCG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCGCCAATCAGGAAGCAGATTCTTCCATCCTGTATTTCAAAACCG  394

seq1  TTTTCATGAATTGACATCAGTGTTACAATTTTAGTAATGGACCCCAAAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGAATTGACATCAGTGTTACAATTTTAGTAATGGACCCCAAAAA  444

seq1  ACATCACTGCTAAATGGTTTTCATTTTCTTTATAGGCAACATCCTACAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTGCTAAATGGTTTTCATTTTCTTTATAGGCAACATCCTACAGA  494

seq1  ATGAATGTGCAGACAGATGCCTCTGACTCCAACTAAACACACTAGGTCCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTGCAGACAGATGCCTCTGACTCCAACTAAACACACTAGGTCCT  544

seq1  AATTACCTCAAAATCTTTCAATTCAAATCAAGAGAACATTTCAACACTGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTCAAAATCTTTCAATTCAAATCAAGAGAACATTTCAACACTGC  594

seq1  TGCGTTTGTCTCTTTGAGAAGGTAAACACCAGGTTTTAGTGGACTGTGCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTTGTCTCTTTGAGAAGGTAAACACCAGGTTTTAGTGGACTGTGCT  644

seq1  AATAATAACCACTCCAAGTGGTTAAACAAAACTCCAATTCTTTACATGAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACCACTCCAAGTGGTTAAACAAAACTCCAATTCTTTACATGAC  694

seq1  TGGCAATGAAAAGGAAGTTTTAAATGAAGGAATGTAAAAATTTGAGCAAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATGAAAAGGAAGTTTTAAATGAAGGAATGTAAAAATTTGAGCAAC  744

seq1  TTTTATGGCTTACTTAGAAAATAAAAATCTCTAATAAAAATTATATTATG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGCTTACTTAGAAAATAAAAATCTCTAATAAAAATTATATTATG  794

seq1  ATAGAAAGCTGAATATGATATTCGAATGACCCACCTTTCATATTTTTAAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGCTGAATATGATATTCGAATGACCCACCTTTCATATTTTTAAC  844

seq1  TTTCATATCTTTACCAATGAGTGATCTGCACAGATTCAGAAATTTCTTTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATCTTTACCAATGAGTGATCTGCACAGATTCAGAAATTTCTTTA  894

seq1  AAAATCTGCTTCATGTAAACAGTTCCTATATTTAAAACTGCAAGATTGGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGCTTCATGTAAACAGTTCCTATATTTAAAACTGCAAGATTGGA  944

seq1  ATTGTAAATACTACATTTCCACAACTCTACCTAGTCTTCCAGCTCTAAAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAATACTACATTTCCACAACTCTACCTAGTCTTCCAGCTCTAAAT  994

seq1  ACAAATCAAAAATAGGTTTTTCAAAAAGCAGTTGGCAGCAGAAAGCAGGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCAAAAATAGGTTTTTCAAAAAGCAGTTGGCAGCAGAAAGCAGGA  1044

seq1  CACAGCATGTGGCTGGGTATGCAACAGCCATTCTTTGCTTTCTGGGAATT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATGTGGCTGGGTATGCAACAGCCATTCTTTGCTTTCTGGGAATT  1094

seq1  CTAGGGGAGAACAGAGGCATAGGGCCAGAATGGTTAGAGCAAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGAGAACAGAGGCATAGGGCCAGAATGGTTAGAGCAAGAATTC  1142

seq1: chr4_18072355_18073456
seq2: B6Ng01-007M20.g_68_1166

seq1  GAATTCACCTCGAAAAGTTCAAAAACATTACAGAAGGAAAGATAACAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCGAAAAGTTCAAAAACATTACAGAAGGAAAGATAACAGTG  50

seq1  GGTCACAATGAGGTGAGGCTAGTAGGTGTGGGAAGACACACAGAGCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAATGAGGTGAGGCTAGTAGGTGTGGGAAGACACACAGAGCCAGC  100

seq1  AAACCATCAGTGGGTGCAGAAGGTTGAGCATTATAATTCTGTCATGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCAGTGGGTGCAGAAGGTTGAGCATTATAATTCTGTCATGTGCT  150

seq1  TTTGGTGTATATGGTCTCATATCATCACTCACACCAAACGTTACTGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTATATGGTCTCATATCATCACTCACACCAAACGTTACTGACAA  200

seq1  CAACCAGGAAGTAGCAGCCACTTTGGTTGATAACAAAATAACAAAATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGGAAGTAGCAGCCACTTTGGTTGATAACAAAATAACAAAATGAT  250

seq1  AAAATTGACACAGCAAATAGTTTGATGTATACTTTTTGATAAGATGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGACACAGCAAATAGTTTGATGTATACTTTTTGATAAGATGTACT  300

seq1  CAGAATGAAAAATAGTAGTACTCGTGGCAACTATAACCTGAGCCTAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAAAAATAGTAGTACTCGTGGCAACTATAACCTGAGCCTAAGCA  350

seq1  TGAAGAACAACAGTATTGAATGTGGTTTCAGTGTCCTTGCCAGGATCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACAACAGTATTGAATGTGGTTTCAGTGTCCTTGCCAGGATCTAC  400

seq1  CTTGAGTTTTCATACGTGATTATTCTAGTGATGGGGCCTCATTTAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTTTCATACGTGATTATTCTAGTGATGGGGCCTCATTTAGTGTT  450

seq1  TTATTTGTTTATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTG  500

seq1  GTTTCCCCTCCTAAAACCCCATATCCCTCCCCGCCCCCCCCAGCTCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCTCCTAAAACCCCATATCCCTCCCCGCCCCCCCCAGCTCACCA  550

seq1  ACATACCCACTCCTAATTCCTAATCCTGGAATTCCCCTACACTCCAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCCACTCCTAATTCCTAATCCTGGAATTCCCCTACACTCCAGCAT  600

seq1  AGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGACTGACTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGACTGACTAGG  650

seq1  CCATCTTCTGCTACATATTCAGCAGGAGCCATGAGTCCTACCATGTGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCTGCTACATATTCAGCAGGAGCCATGAGTCCTACCATGTGTAC  700

seq1  TCTTTGGTTGGTGGTTTAGTCCCAGGGAGATCTGGAGTTACTGGTTGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTTGGTGGTTTAGTCCCAGGGAGATCTGGAGTTACTGGTTGGTT  750

seq1  CATATTGTTGTTCCTCCTATGGGGCTGCAAAGCTCTTCAGGTCCTTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTTGTTCCTCCTATGGGGCTGCAAAGCTCTTCAGGTCCTTGAGT  800

seq1  AC-TTTCTCTAGCTTCTTCATT-GGGGACCCAAT-GGATGGCTGTGAGCA  847
      || ||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  ACTTTTCTCTAGCTTCTTCATTGGGGGACCCAATGGGATGGCTGTGAGCA  850

seq1  TCCACTTCTGTATTTGTCAGGCACAGGCAGAG-CCTTTCAGGAGACAACT  896
      |||||||||||||||||||||||||||||||| |||||||| | ||||||
seq2  TCCACTTCTGTATTTGTCAGGCACAGGCAGAGCCCTTTCAGAAAACAACT  900

seq1  ATATCAGGCTCCTGTCAGCAAGCACTTGTTGGCATCCACAATAA-TGTCT  945
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  ATATCAGGCTCCTGTCAGCAAGCACTTGTTGGCATCAACAATAATTGTCT  950

seq1  GGGTTTGGTGATTGTAAATTGGATGGATCCCCAGATGTGGCTGTCCAACT  995
      |||||||||||||||||| ||||||||||||||| |||| ||||||||||
seq2  GGGTTTGGTGATTGTAAA-TGGATGGATCCCCAG-TGTGCCTGTCCAACT  998

seq1  GGAGGGGCAACCTCATGATGTAGTTTTAAATTCTTTTCTAGTTCTTATGG  1045
       |  |||||| ||| |||||||||||   | |||||||||||||||||||
seq2  TGGAGGGCAA-CTCTTGATGTAGTTT---AATCTTTTCTAGTTCTTATGG  1044

seq1  GAAACTTATCAGAAGAGTCTTGACTGTATTTAGACTCCATTTCTTTTCTG  1095
      ||||| ||||||||||| ||||||||  |||||||||||||||||||  |
seq2  GAAAC-TATCAGAAGAG-CTTGACTGATTTTAGACTCCATTTCTTTTTGG  1092

seq1  AATACAC  1102
      |||||||
seq2  AATACAC  1099