BAC Information

Click to search

BAC

Clone NameB6Ng01-008K03
Chromosome4 (Build37)
Map Location 17,868,203 - 18,017,553
singlet/doubletdoublet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008K03.bB6Ng01-008K03.g
ACCDH844827DH844828
length956455
definitionDH844827|Mus musculus domesticus DNA, BAC clone: B6Ng01-008K03, 5' end.DH844828|Mus musculus domesticus DNA, BAC clone: B6Ng01-008K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,016,596 - 18,017,553)(17,868,203 - 17,868,663)
sequence
gaattcacatcctattcttgtcttgtttcttaataaccttgtcatttttg
tcagcacactagttcttgatttaattaccaactaatatctaaatctcaat
gtgattagtatactaactacagaggaatgtcataggtatggggacatgtg
gactcccatattcaagttattattatttcctacaaatcaaaaattttgct
cattaagaaaaagagcaaggtttttcagatgaaagaagttttgccctatc
tcccgaggttatgataaaggaaatactttctgggaaagagggaatcttca
gtggacctgcctgcaaactctgagggagggatctctaggtagtagctctt
ataagttgtcattcacatttgggtgatatagctgagtcacctattctcct
gaatgtttccacatgatcttattagttcaccatggtaatattaggccaaa
taatatttttctttttttaaatctgccattggcaatttttggaatgaaca
aatacgtattaatatgtgcttggaaaagttatacagcaacctaaaatact
gaaagagacccatatatatttaacaggcaaacttctcaatgtatatatat
attttttttttacaaaatcaccattaagattatatatgtgattttaaaaa
tattttttattaggtattttcctcatttacatttccaatgctatcccaaa
agtcccccataccctaccccccccccacacctctacccacccactcccac
tttttggccctggcgttcccctgtactggggtatataaagtttgcatgtc
caatgggcctctctttccagtgatggcttacgaggccatcttttgataca
tatgcagctagagtcaagagctcttggttactgttagttcataatgtgtt
ccacctatagggttgcaaatccctctagctcctccattgggggccctgtg
atccat
caggacagccagagctacgcagagaaaccctgtctcaaaaaccaaaaaaa
aaaaaaaaaaaaaaaaaaggagaaaactagaagagaattctagtaaaaac
tatatatccatttgattttctcatctgcatgtgctttactaatattccat
tttagtgtagtataccagaatacttcacacaaaaatctgattaaaatagt
tcatcataacacttcaaaggttgctgtaaacttgctgcaatctatgactt
ttttaaatgaaatattactcatgattttgaatgtggtattttgaaattaa
gtattatgatcacttaagagtgaagagagatataccattatataaaagac
ccttatattttatgtataactgagcatggacgttctattctctaattgtt
cacattttttaaaaacgtacttgtgtggagctgcctataagttgttagtg
tgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18016596_18017553
seq2: B6Ng01-008K03.b_46_1001 (reverse)

seq1  ATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGGGATCTGCAACCCTAT  50
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGGGATTTGCAACCCTAT  50

seq1  AGGTGGAACAACATTATGAACTAAACAGTAACCCAGAGCTCTTGACTCTA  100
      ||||||||| |||||||||||| |||||||||| ||||||||||||||||
seq2  AGGTGGAAC-ACATTATGAACT-AACAGTAACCAAGAGCTCTTGACTCTA  98

seq1  GCTGCATATGTATCAAAAGATGGCCTCGTAAGCCATCACTGGAAAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATATGTATCAAAAGATGGCCTCGTAAGCCATCACTGGAAAGAGAG  148

seq1  GCCCATTGGACATGCAAACTTTATATACCCCAGTACAGGGGAACGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTGGACATGCAAACTTTATATACCCCAGTACAGGGGAACGCCAGG  198

seq1  GCCAAAAAGTGGGAGTGGGTGGGTAGAGGTGTGGGGGGGGGGTAGGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAAGTGGGAGTGGGTGGGTAGAGGTGTGGGGGGGGGGTAGGGTAT  248

seq1  GGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAAT  298

seq1  AAAAAATATTTTTAAAATCACATATATAATCTTAATGGTGATTTTGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATTTTTAAAATCACATATATAATCTTAATGGTGATTTTGTAAA  348

seq1  AAAAAAATATATATATACATTGAGAAGTTTGCCTGTTAAATATATATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATATATATACATTGAGAAGTTTGCCTGTTAAATATATATGGG  398

seq1  TCTCTTTCAGTATTTTAGGTTGCTGTATAACTTTTCCAAGCACATATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCAGTATTTTAGGTTGCTGTATAACTTTTCCAAGCACATATTAA  448

seq1  TACGTATTTGTTCATTCCAAAAATTGCCAATGGCAGATTTAAAAAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATTTGTTCATTCCAAAAATTGCCAATGGCAGATTTAAAAAAAGAA  498

seq1  AAATATTATTTGGCCTAATATTACCATGGTGAACTAATAAGATCATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATTTGGCCTAATATTACCATGGTGAACTAATAAGATCATGTGG  548

seq1  AAACATTCAGGAGAATAGGTGACTCAGCTATATCACCCAAATGTGAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCAGGAGAATAGGTGACTCAGCTATATCACCCAAATGTGAATGA  598

seq1  CAACTTATAAGAGCTACTACCTAGAGATCCCTCCCTCAGAGTTTGCAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATAAGAGCTACTACCTAGAGATCCCTCCCTCAGAGTTTGCAGGC  648

seq1  AGGTCCACTGAAGATTCCCTCTTTCCCAGAAAGTATTTCCTTTATCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCACTGAAGATTCCCTCTTTCCCAGAAAGTATTTCCTTTATCATAA  698

seq1  CCTCGGGAGATAGGGCAAAACTTCTTTCATCTGAAAAACCTTGCTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGGAGATAGGGCAAAACTTCTTTCATCTGAAAAACCTTGCTCTTTT  748

seq1  TCTTAATGAGCAAAATTTTTGATTTGTAGGAAATAATAATAACTTGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAGCAAAATTTTTGATTTGTAGGAAATAATAATAACTTGAATA  798

seq1  TGGGAGTCCACATGTCCCCATACCTATGACATTCCTCTGTAGTTAGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCCACATGTCCCCATACCTATGACATTCCTCTGTAGTTAGTATA  848

seq1  CTAATCACATTGAGATTTAGATATTAGTTGGTAATTAAATCAAGAACTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCACATTGAGATTTAGATATTAGTTGGTAATTAAATCAAGAACTAG  898

seq1  TGTGCTGACAAAAATGACAAGGTTATTAAGAAACAAGACAAGAATAGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGACAAAAATGACAAGGTTATTAAGAAACAAGACAAGAATAGGAT  948

seq1  GTGAATTC  958
      ||||||||
seq2  GTGAATTC  956

seq1: chr4_17868203_17868663
seq2: B6Ng01-008K03.g_68_528

seq1  GAATTCCAGGACAGCCAGAGCTACGCAGAGAAACCCTGTCTCAAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGAGCTACGCAGAGAAACCCTGTCTCAAAAACCA  50

seq1  AAAAAAAAAAAAAAAAAAAAAAAAGGAGAAAACTAGAAGAGAATTCTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAGGAGAAAACTAGAAGAGAATTCTAGT  100

seq1  AAAAACTATATATCCATTTGATTTTCTCATCTGCATGTGCTTTACTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATATATCCATTTGATTTTCTCATCTGCATGTGCTTTACTAATA  150

seq1  TTCCATTTTAGTGTAGTATACCAGAATACTTCACACAAAAATCTGATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTTAGTGTAGTATACCAGAATACTTCACACAAAAATCTGATTAA  200

seq1  AATAGTTCATCATAACACTTCAAAGGTTGCTGTAAACTTGCTGCAATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTCATCATAACACTTCAAAGGTTGCTGTAAACTTGCTGCAATCTA  250

seq1  TGACTTTTTTAAATGAAATATTACTCATGATTTTGAATGTGGTATTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTTTAAATGAAATATTACTCATGATTTTGAATGTGGTATTTTGA  300

seq1  AATTAAGTATTATGATCACTTAAGAGTGAAGAGAGATATACCATTATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTATTATGATCACTTAAGAGTGAAGAGAGATATACCATTATATA  350

seq1  AAAGACCCTTATATTTTATGTATAACTGAGCATGGACGTTCTATTCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCTTATATTTTATGTATAACTGAGCATGGACGTTCTATTCTCTA  400

seq1  ATTGTTCACATTTTTTAAAAACGTACTTGTGTGGAGCTGCCTATAAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCACATTTTTTAAAAACGTACTTGTGTGGAGCTGCCTATAAGTTG  450

seq1  TTAGTGTGTGT  461
      |||||||||||
seq2  TTAGTGTGTGT  461