BAC Information

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BAC

Clone NameB6Ng01-008L16
Chromosome4 (Build37)
Map Location 144,587,814 - 144,674,712
singlet/doubletdoublet
Overlap geneVps13d
Upstream geneLOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3
Downstream geneTnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008L16.bB6Ng01-008L16.g
ACCDH844887DH844888
length5601,164
definitionDH844887|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L16, 5' end.DH844888|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,674,147 - 144,674,712)(144,587,814 - 144,588,980)
sequence
tgtacccatgtcccccagagccacatgaggacccatggaacatttcctta
aggtccagggtcagttggatttaagtattccccaggtttaatatgttagc
aatgtgtaaaactgtagtagatcattccagggacttcacagcctggtcct
gtagagctttctgtagttctgggagtgcacggtaagtagcacaagctaca
tgcagcacctgagtgctagttcctgagaaaggtggttctgtaaccaaggg
aggcagcagcttttcattttagccaactttttttttaagatttattttat
ttgtgtgggtgttttgcatgctttatagcatgtgttccatgtgcaaatgt
tgtgcccgaggaggccagaagaggccgtaggattctctagaacactgcaa
tgttggttgatgtcggtctcaacagttttgtaggatgaagaactatgatg
gtccagttctgaatcctacagaaaatggggtagtttaatctttggggttt
taattttttaatttattcattcgtttgtttgtttatttattttgtgtgtg
tgtgtgagag
gaattcatttgtattgttggcctgaggaaggggtgggggctgtctgtata
ggcctggaaaaaaaggacacatacaaattgtgttagagacatgccatgag
ccagagagatgggggtaagatgctagatactgccagacagatggggcaat
aagcgaaatctcccagacctggtgccaaccactgctcacacccagcatgt
ggctttctaattgtttccctgtgcatgggtacacaggcttgtgagcaaga
caaaaaggaagcaatagacaatgccctcctgctcaagctttcctgtagct
cagagagaggcaggtatagccaaacctcctctgataccaagaagggacac
aaaagctctgtcctctctccctaaaactgagggtttcttttttcttctgg
acccaggcacagacagcagacagtgagggcaaactctggctaactaatga
tcaagttccttggggagggaggggcataagcaagcccagagcagctctga
tgctgacaaacggtgagtcatgggagaggccagaagtgactctttggttg
tagttcttcgaggctccctttccaaaggattgctcagaccagggagtggg
accaaacttccttctatgtggtacaaaaatcattgaggacttcctggtgt
tctggatgtagatttttgcagataagaatctctatgaatgctagttaaca
tctggcatattcaatgattaattattaaacagaaccaaagaaatccaaag
agcagcaaaatttcttcatacaatttggcctcatatggagggtgaagaga
cacatgcagtttgggtttagcaatcgtgtaatggagtccagatgacaact
ccctccatgctggagtcaccatcagagtctcttggggccttcagagcacc
ttgacagtgggaaacatgactaacaaaggacccagagaggaggtcttagg
ttggctgggcacgtatctcttcccttacctctagagtcttttactcagcc
acaggcaccaaaaaaaacagaaaatctcctctggctgcagggggccacag
catgctgaatccatctgatgcagcaggcacctacttaaccagaagacttt
ctgtgcagcttgttagcagactggttcttgtctcccaggtgtaacaaaaa
agagggaacttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144674147_144674712
seq2: B6Ng01-008L16.b_46_611 (reverse)

seq1  CTCTCACACACACACACAAAATAAATAAACAAACAAACGAATGAATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACACACACACACAAAATAAATAAACAAACAAACGAATGAATAAAT  50

seq1  TAAAAAATTAAAACCCCAAAGATTAAACTACCCCATTTTCTGTAGGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTAAAACCCCAAAGATTAAACTACCCCATTTTCTGTAGGATTC  100

seq1  AGAACTGGACCATCATAGTTCTTCATCCTACAAAACTGTTGAGACCGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGACCATCATAGTTCTTCATCCTACAAAACTGTTGAGACCGACA  150

seq1  TCAACCAACATTGCAGTGTTCTAGAGAATCCTACGGCCTCTTCTGGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAACATTGCAGTGTTCTAGAGAATCCTACGGCCTCTTCTGGCCTC  200

seq1  CTCGGGCACAACATTTGCACATGGAACACATGCTATAAAGCATGCAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGCACAACATTTGCACATGGAACACATGCTATAAAGCATGCAAAAC  250

seq1  ACCCACACAAATAAAATAAATCTTAAAAAAAAAGTTGGCTAAAATGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACAAATAAAATAAATCTTAAAAAAAAAGTTGGCTAAAATGAAAA  300

seq1  GCTGCTGCCTCCCTTGGTTACAGAACCACCTTTCTCAGGAACTAGCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCCTCCCTTGGTTACAGAACCACCTTTCTCAGGAACTAGCACTC  350

seq1  AGGTGCTGCATGTAGCTTGTGCTACTTACCGTGCACTCCCAGAACTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGCATGTAGCTTGTGCTACTTACCGTGCACTCCCAGAACTACAG  400

seq1  AAAGCTCTACAGGACCAGGCTGTGAAGTCCCTGGAATGATCTACTACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTACAGGACCAGGCTGTGAAGTCCCTGGAATGATCTACTACAGT  450

seq1  TTTACACATTGCTAACATATTAAACCTGGGGAATACTTAAATCCAACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACATTGCTAACATATTAAACCTGGGGAATACTTAAATCCAACTGA  500

seq1  CCCTGGACCTTAAGGAAATGTTCCATGGGTCCTCATGTGGCTCTGGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACCTTAAGGAAATGTTCCATGGGTCCTCATGTGGCTCTGGGGGA  550

seq1  CATGGGTACAGAATTC  566
      ||||||||||||||||
seq2  CATGGGTACAGAATTC  566

seq1: chr4_144587814_144588980
seq2: B6Ng01-008L16.g_66_1229

seq1  GAATTCATTTGTATTGTTGGCCTGAGGAAGGGGTGGGGGCTGTCTGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTATTGTTGGCCTGAGGAAGGGGTGGGGGCTGTCTGTATA  50

seq1  GGCCTGGAAAAAAAGGACACATACAAATTGTGTTAGAGACATGCCATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGAAAAAAAGGACACATACAAATTGTGTTAGAGACATGCCATGAG  100

seq1  CCAGAGAGATGGGGGTAAGATGCTAGATACTGCCAGACAGATGGGGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGATGGGGGTAAGATGCTAGATACTGCCAGACAGATGGGGCAAT  150

seq1  AAGCGAAATCTCCCAGACCTGGTGCCAACCACTGCTCACACCCAGCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAAATCTCCCAGACCTGGTGCCAACCACTGCTCACACCCAGCATGT  200

seq1  GGCTTTCTAATTGTTTCCCTGTGCATGGGTACACAGGCTTGTGAGCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTAATTGTTTCCCTGTGCATGGGTACACAGGCTTGTGAGCAAGA  250

seq1  CAAAAAGGAAGCAATAGACAATGCCCTCCTGCTCAAGCTTTCCTGTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGAAGCAATAGACAATGCCCTCCTGCTCAAGCTTTCCTGTAGCT  300

seq1  CAGAGAGAGGCAGGTATAGCCAAACCTCCTCTGATACCAAGAAGGGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGGCAGGTATAGCCAAACCTCCTCTGATACCAAGAAGGGACAC  350

seq1  AAAAGCTCTGTCCTCTCTCCCTAAAACTGAGGGTTTCTTTTTTCTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCTGTCCTCTCTCCCTAAAACTGAGGGTTTCTTTTTTCTTCTGG  400

seq1  ACCCAGGCACAGACAGCAGACAGTGAGGGCAAACTCTGGCTAACTAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGCACAGACAGCAGACAGTGAGGGCAAACTCTGGCTAACTAATGA  450

seq1  TCAAGTTCCTTGGGGAGGGAGGGGCATAAGCAAGCCCAGAGCAGCTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCCTTGGGGAGGGAGGGGCATAAGCAAGCCCAGAGCAGCTCTGA  500

seq1  TGCTGACAAACGGTGAGTCATGGGAGAGGCCAGAAGTGACTCTTTGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACAAACGGTGAGTCATGGGAGAGGCCAGAAGTGACTCTTTGGTTG  550

seq1  TAGTTCTTCGAGGCTCCCTTTCCAAAGGATTGCTCAGACCAGGGAGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTCGAGGCTCCCTTTCCAAAGGATTGCTCAGACCAGGGAGTGGG  600

seq1  ACCAAACTTCCTTCTATGTGGTACAAAAATCATTGAGGACTTCCTGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTTCCTTCTATGTGGTACAAAAATCATTGAGGACTTCCTGGTGT  650

seq1  TCTGGATGTAGATTTTTGCAGATAAGAATCTCTATGAATGCTAGTTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATGTAGATTTTTGCAGATAAGAATCTCTATGAATGCTAGTTAACA  700

seq1  TCTGGCATATTCAATGATTAATTATTAAACAGAACCAAAGAAATCCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATATTCAATGATTAATTATTAAACAGAACCAAAGAAATCCAAAG  750

seq1  AGCAGCAAAATTTCTTCATACAATTTGGCCTCATATGGAGGGTGAAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAAATTTCTTCATACAATTTGGCCTCATATGGAGGGTGAAGAGA  800

seq1  CACATGCAGTTTGGGTTTAGCAATCGTGTAATGGAGTCCAGATGACAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCAGTTTGGGTTTAGCAATCGTGTAATGGAGTCCAGATGACAACT  850

seq1  CCCTCCATGCTGGAGTCACCATCAGAGTCTCTTGGGGCCTTCAGAGCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATGCTGGAGTCACCATCAGAGTCTCTTGGGGCCTTCAGAGCACC  900

seq1  TTGACAGT-GGAAACATGACTAACAAAGGACCCAGAGA-GAGGTCTTAGG  948
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  TTGACAGTGGGAAACATGACTAACAAAGGACCCAGAGAGGAGGTCTTAGG  950

seq1  TTGGCTGGGCACCGTATCTCTTCCCTTACCTCTAGAGTCTTTTACTCAGG  998
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TTGGCTGGGCA-CGTATCTCTTCCCTTACCTCTAGAGTCTTTTACTCAG-  998

seq1  CCCACA-GCACCAAAATAAACAG-AAATCCCCTCTGGCCTGCCAAGGGGG  1046
       ||||| ||||||||| |||||| ||||| ||||||| ||||  ||||||
seq2  -CCACAGGCACCAAAAAAAACAGAAAATCTCCTCTGG-CTGC--AGGGGG  1044

seq1  CCACAGCATGCTGAGCACATCTGATGCAGCAGGCACCCTACCTACACAG-  1095
      ||||||||||||||   |||||||||||||||||| ||||| ||  ||| 
seq2  CCACAGCATGCTGAATCCATCTGATGCAGCAGGCA-CCTACTTAACCAGA  1093

seq1  AGACTTCCTGTGCCAGCTGTGTAGCAG-CTGGTTCTTG-CTCCCAGGTGA  1143
      |||||| ||||| |||||   |||||| |||||||||| |||||||||| 
seq2  AGACTTTCTGTG-CAGCTTGTTAGCAGACTGGTTCTTGTCTCCCAGGTG-  1141

seq1  TGAGCAGATAAAGAGGG-ACTTCTG  1167
        | || | |||||||| |||||||
seq2  -TAACA-AAAAAGAGGGAACTTCTG  1164