BAC Information

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BAC

Clone NameB6Ng01-008M16
Chromosome4 (Build37)
Map Location 17,453,721 - 17,610,452
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008M16.bB6Ng01-008M16.g
ACCDH844931DH844932
length1,1801,121
definitionDH844931|Mus musculus domesticus DNA, BAC clone: B6Ng01-008M16, 5' end.DH844932|Mus musculus domesticus DNA, BAC clone: B6Ng01-008M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,609,266 - 17,610,452)(17,453,721 - 17,454,435)
sequence
gaattcttatagtgcattaatgtaattaaaattaacatccatgctttctg
tactataaactccagttttgttacagcaaaattagtttcatcatggcgta
caacttaatactcataatatttaatattttactttatatattatagtctg
tgatgaatgatattttaaggtcctgaattatctttttaattatcaaggaa
cttgatattaaattaaggattaattaaagaagatactatgaaatattttt
catttctgttttcaatatgtcatctgtatcagtaaaattgcatccttaga
gagaaaattaatttatgattattccacttactgaaaattttcatcaatat
caaatgtgtttatatattgaaatcctattagctcccaccaagatgatcag
ttcaagagccaggacctttgaaggtaaccaggtcctaaaggtataacttt
caggaatggaattagtcctatcaaaagaagagacttaagagagtttgatt
ggctatttaatcttaagaggatgtaacagagactctcttaggaagctagc
cctccacacactgaacctacaagcaactttgtcttagatatcttagctcc
agaactgtgagaattaaatttctctcagtctcttttatcctcaaaatttt
ctgtctaaaaaagtattatatcagacaaaatgagcaaaggcagtttgtta
aattacaaagtgaatttgtttctttccattactaactcatgttttagtta
catataaaattgaatttatttttcctaatttttctaaataaagtaggaat
tgtctattaaaactattattaatacaacataaatttgtatagttttttaa
ttaagaaaaacgaatgctttgtattttactaacaacaaattagctgtaaa
ttaaatctaatactttttgtcaaacagaaattttctattcctgaaaaatc
ctaaaatatattcatctttacaattaaatttgatttctcagtcaacttct
cacatgcaatcttgctcaagtcaagccattgaatgagttatttatgcctc
atgctctcatttggggttactagttttgttcctcttgaatgagattgtca
gtgcgaagtgtttatccaggccaagcaaacaacaacccattttttttttc
ttccgaaataaaaacacataaaccattttg
gaattcagtcttccactagcagcctttgaatgaagacgtagaactctcag
ctctgcctgcgccatgcctgcctggatactgccatgctcccaccttgatg
ataatgaactgaacctctgaacctgtaagccagccccaattaaatgttgt
ttttataagacttgccttggtcatggtgtctgttcacagcagtaaaaccc
tgactaagacaatctgtattccccatttctaatagagttatttggttctc
tggagtctaaattcctgagttctttgtatatattagatattagctatcta
tcagatataagtaagattggtaaatgtcttaccccagtctgtaggttgcc
tttattttttctattgacagtgtcctttgccttacagaagctttgcaatt
ttttgaggtcccaattgtagattcttgatcttagaacataaaccattggt
gttctgttcaggaatttttgccctgtgcccatgtgtttgaggcttttccc
cacttctcttctattagatttagtgtatctggtctgaggacccagctata
caactcctgggcatatacccaaaagatgctctgacatgcaataaggatac
atgatcaaatatgctcatagcagacatatttataaagccagaagatagaa
acaacccagatgtccctcaaaagaagaatggatacagaaaatttggtaca
tttacacaatggaacactactcagctattaatatcatcctgggggaggca
gccctgacacaaaagagcatacatgatatgcagccactgataagtggata
ttagtaccaaatcccaaatacctaagacacaattcactacatgaagatca
ggaagaaggaagaccaaagtgtggatgcttctgtccttcatagaagtggg
aagaaaatttgacagtttttctgagtggttcttgacatagcacaagctga
aataggaccaatgcagttaaaatacataaagtacaactatctatgatcag
tgattgactgatcaattgtagcttagactgtgttctcaaagaaagacttg
tttatattactttagcatttgatcaaatattacttggacaatcctcttga
agttctctcagggagactagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17609266_17610452
seq2: B6Ng01-008M16.b_46_1225 (reverse)

seq1  CAAAATATGTTTATTGTTTTTTATTTTCTGGAAG--AAAAAAAATGGTTG  48
      ||||||  ||||||   |||||||||   |||||  ||||||||||| | 
seq2  CAAAAT-GGTTTATGTGTTTTTATTT--CGGAAGAAAAAAAAAATGGGT-  46

seq1  TCTTGTTTTGCCTTGCCTTGATAACACTTTTCGCACTGAACAATCTTCAT  98
      | ||| ||||| | |||| ||||| ||  ||||||||| |||||||   |
seq2  TGTTG-TTTGCTTGGCCTGGATAA-ACACTTCGCACTG-ACAATCTCATT  93

seq1  CAAAAGAGACAGACACTTAGTAACCACCAAATGAGAGCAATGA-GCATAA  147
      ||| ||  ||| | || |||||||| |||||||||||| |||| ||||||
seq2  CAAGAGGAACA-AAAC-TAGTAACC-CCAAATGAGAGC-ATGAGGCATAA  139

seq1  ATAACTCATTCAATGGCTTGACTTTGAGCAGATTTGCATGTGAG-AGTTG  196
      |||||||||||||||||||||| |||||||   ||||||||||| |||||
seq2  ATAACTCATTCAATGGCTTGAC-TTGAGCAAGATTGCATGTGAGAAGTTG  188

seq1  ACTGAGAAATCAAATTTAATTGTAAAGATGAATATATTTTAGGATTTTTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAATCAAATTTAATTGTAAAGATGAATATATTTTAGGATTTTTC  238

seq1  AGGAATAG-AAATTTCTGTTTGACAAAAAGTATTAGATTTAATTTACAGC  295
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAGAAAATTTCTGTTTGACAAAAAGTATTAGATTTAATTTACAGC  288

seq1  TAATTTGTTGTTAGTAAAATACAAAGCATTCGTTTTTCTTAATTAAAAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTTGTTAGTAAAATACAAAGCATTCGTTTTTCTTAATTAAAAAA  338

seq1  CTATACAAATTTATGTTGTATTAATAATAGTTTTAATAGACAATTCCTAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAATTTATGTTGTATTAATAATAGTTTTAATAGACAATTCCTAC  388

seq1  TTTATTTAGAAAAATTAGGAAAAATAAATTCAATTTTATATGTAACTAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAGAAAAATTAGGAAAAATAAATTCAATTTTATATGTAACTAAA  438

seq1  ACATGAGTTAGTAATGGAAAGAAACAAATTCACTTTGTAATTTAACAAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGTTAGTAATGGAAAGAAACAAATTCACTTTGTAATTTAACAAAC  488

seq1  TGCCTTTGCTCATTTTGTCTGATATAATACTTTTTTAGACAGAAAATTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGCTCATTTTGTCTGATATAATACTTTTTTAGACAGAAAATTTT  538

seq1  GAGGATAAAAGAGACTGAGAGAAATTTAATTCTCACAGTTCTGGAGCTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAAAAGAGACTGAGAGAAATTTAATTCTCACAGTTCTGGAGCTAA  588

seq1  GATATCTAAGACAAAGTTGCTTGTAGGTTCAGTGTGTGGAGGGCTAGCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTAAGACAAAGTTGCTTGTAGGTTCAGTGTGTGGAGGGCTAGCTT  638

seq1  CCTAAGAGAGTCTCTGTTACATCCTCTTAAGATTAAATAGCCAATCAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGAGTCTCTGTTACATCCTCTTAAGATTAAATAGCCAATCAAAC  688

seq1  TCTCTTAAGTCTCTTCTTTTGATAGGACTAATTCCATTCCTGAAAGTTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAGTCTCTTCTTTTGATAGGACTAATTCCATTCCTGAAAGTTAT  738

seq1  ACCTTTAGGACCTGGTTACCTTCAAAGGTCCTGGCTCTTGAACTGATCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAGGACCTGGTTACCTTCAAAGGTCCTGGCTCTTGAACTGATCAT  788

seq1  CTTGGTGGGAGCTAATAGGATTTCAATATATAAACACATTTGATATTGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGGAGCTAATAGGATTTCAATATATAAACACATTTGATATTGAT  838

seq1  GAAAATTTTCAGTAAGTGGAATAATCATAAATTAATTTTCTCTCTAAGGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTTCAGTAAGTGGAATAATCATAAATTAATTTTCTCTCTAAGGA  888

seq1  TGCAATTTTACTGATACAGATGACATATTGAAAACAGAAATGAAAAATAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTTACTGATACAGATGACATATTGAAAACAGAAATGAAAAATAT  938

seq1  TTCATAGTATCTTCTTTAATTAATCCTTAATTTAATATCAAGTTCCTTGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTATCTTCTTTAATTAATCCTTAATTTAATATCAAGTTCCTTGA  988

seq1  TAATTAAAAAGATAATTCAGGACCTTAAAATATCATTCATCACAGACTAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAAGATAATTCAGGACCTTAAAATATCATTCATCACAGACTAT  1038

seq1  AATATATAAAGTAAAATATTAAATATTATGAGTATTAAGTTGTACGCCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAAAGTAAAATATTAAATATTATGAGTATTAAGTTGTACGCCAT  1088

seq1  GATGAAACTAATTTTGCTGTAACAAAACTGGAGTTTATAGTACAGAAAGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAACTAATTTTGCTGTAACAAAACTGGAGTTTATAGTACAGAAAGC  1138

seq1  ATGGATGTTAATTTTAATTACATTAATGCACTATAAGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTTAATTTTAATTACATTAATGCACTATAAGAATTC  1180

seq1: chr4_17453721_17454435
seq2: B6Ng01-008M16.g_485_1184

seq1  GTAGATTCTTGATCTTAGAACATAAACCATTGGTGTTCTGTTCAGGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTCTTGATCTTAGAACATAAACCATTGGTGTTCTGTTCAGGAATT  50

seq1  TTTGCCCTGTGCCCATGTGTTTGAGGCTTTTCCCCACTTCTCTTCTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCTGTGCCCATGTGTTTGAGGCTTTTCCCCACTTCTCTTCTATTA  100

seq1  GATTTAGTGTATCTGGTCTGAGGACCCAGCTATACAACTCCTGGGCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGTGTATCTGGTCTGAGGACCCAGCTATACAACTCCTGGGCATAT  150

seq1  ACCCAAAAGATGCTCTGACATGCAATAAGGATACATGATCAAATATGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAAGATGCTCTGACATGCAATAAGGATACATGATCAAATATGCTC  200

seq1  ATAGCAGACATATTTATAAAGCCAGAAGATAGAAACAACCCAGATGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGACATATTTATAAAGCCAGAAGATAGAAACAACCCAGATGTCCC  250

seq1  TCAAAAGAAGAATGGATACAGAAAATTTGGTACATTTACACAATGGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAGAATGGATACAGAAAATTTGGTACATTTACACAATGGAACA  300

seq1  CTACTCAGCTATTAATATCATCCTGGGGGAGGCAGCCCTGACACAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAGCTATTAATATCATCCTGGGGGAGGCAGCCCTGACACAAAAGA  350

seq1  GCATACATGATATGCAGCCACTGATAAGTGGATATTAGTACCAAATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATGATATGCAGCCACTGATAAGTGGATATTAGTACCAAATCCCA  400

seq1  AATACCTAAGACACAATTCACTACATGAAGATCAGGAAGAAGGAAGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTAAGACACAATTCACTACATGAAGATCAGGAAGAAGGAAGACCA  450

seq1  AAGTGTGGATGCTTCTGTCCTTCATAGAAGTGGGAAGAAAATTTGAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGTGTGGATGCTTCTGTCCTTCATAGAAGTGGGAAGAAAATTTG-ACAG  499

seq1  -TTTTCTGAGTGGTTCTTGACATAGCACAAGCTGAAAATAGGAACCAATG  549
       ||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TTTTTCTGAGTGGTTCTTGACATAGCACAAGCTG-AAATAGG-ACCAATG  547

seq1  CAAGTTAAAAATACATAAAAGTACAAACTATCTATTGATCAGTGATTGAC  599
      | |||| ||||||||| ||||||| ||||||||| |||||||||||||||
seq2  C-AGTT-AAAATACAT-AAAGTAC-AACTATCTA-TGATCAGTGATTGAC  592

seq1  TGATCAATTGTAGCTTAGACTGTGTTCTTCACAGAAAGACTTGTTTTATA  649
      ||||||||||||||||||||||||||| ||| ||||||||||| ||||||
seq2  TGATCAATTGTAGCTTAGACTGTGTTC-TCAAAGAAAGACTTG-TTTATA  640

seq1  TTAACTTTAGCATTTGATACAAATATATACTTTGACCAAATCTCTTTGAA  699
      || ||||||||||||||| ||||||| ||||| |||  ||||   |||||
seq2  TT-ACTTTAGCATTTGAT-CAAATAT-TACTTGGAC--AATCCTCTTGAA  685

seq1  GTTTCTCTCAGGGAGA  715
      | ||||||||||||||
seq2  G-TTCTCTCAGGGAGA  700