BAC Information

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BAC

Clone NameB6Ng01-009G24
Chromosome4 (Build37)
Map Location 147,012,126 - 147,134,227
singlet/doubletdoublet
Overlap geneLOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677
Upstream geneOTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
Downstream geneLOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009G24.bB6Ng01-009G24.g
ACCDH845376DH845377
length1,2111,143
definitionDH845376|Mus musculus domesticus DNA, BAC clone: B6Ng01-009G24, 5' end.DH845377|Mus musculus domesticus DNA, BAC clone: B6Ng01-009G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,012,126 - 147,013,345)(147,133,077 - 147,134,227)
sequence
gaattcaggaggaaaggctaactggggtaactattaacatatcaatgaag
acagggattgggatggtgctttcttggctcctggttaactcttggcttga
cctctattctccttctcatcttcaattcccttccccccatctaatgaact
ggttcagtctggacccaaagagataactctgaatgctttctccctcatgc
tgaaataccaaaaattaaccccaccacaagcccaagaaccaggtatcttc
ttgcagctctgcaggttgcatgtcttaggaaaataataaggcctcacaga
aaatgacaagggcatataaaaccagctgtaggaagtgaccaaagtctatc
tcttggtcaagatgtaatattttaaaaagctttccaacattgtagaattt
ttttttctctgacgacattaagggttaacagaacctactatatatcttct
ccttagttgttcattgctgcaaacctgttttcatgcttcaatgaaaccta
aggtgtaacattaataactaagactatgaagacacatctctggatgctgt
atttacatcaatgactacatataactcagtgtgaaactaacggagactat
aactttgttaggttaatgtgaatatatacagccatatgatggtgctttat
aacgtaaattttctaattcaatcaaatcttcaccaattccccatatgaca
aatatctacaaggctctctcaggatgcctactcagttccctggagaaagg
gaaatgaaatggcaaatgaaggaacaggggagtttaagaaagcaggaacg
aatttgaattacagttgctttataaaggcttttgcaaagacaaacctccc
ggtatacaaactctagatgcagccaaggatctacaaggatactttagaaa
aatattctggcaaccataaaattgattaaaacatcatcatgaaccaaaat
cacaggatctcaaacttcctgacatggtagatatcacacagattgtgaga
gtagcgacagaaaatgcacccctgctctacgtgcctgccctgcttctgcc
atttcctagtacaacagcttctctgaactggaagcacaggacagctgctg
aatgtctctaggaagcagcaagaattttcaggttctggcaatatacagga
ctagtctcttcttcaggacaatcctggacaccaaggtagccagtcaaggg
aaatgctgaaa
gaattcagacataatagtgagctgcaatatatttagagagaattagatta
gtttttaaagtagaaacagcaagtacctttaccctttaatcatttgttca
tggagtagatttacattttttgaggcatatttgcaataaagacagtatat
agtctgtatattataatttttgataaacaagggaagaatgatagattaca
cttctatgaaaagtgcaattgtgatatacatatggtcaaattctgaagaa
aaaagttaaaattagaatactgaaattttcagttaggttaatacaatgag
gaataatttattagattttaatgaatatttagtataattctccctcaatt
taaaaacacagtttgatcaaaaattattatactccattggaatgcattgc
cacatatgatatttgcttaaacatacatagctaatcattttatagtgaaa
gaccatatggtattagagaaattattattaagcatatttatttatgtctc
cacaggagctaattaagggtcaaagatgtggctctgcagttaagctctct
tcttcttgcagtattcagattcagttttctgtacctgcctggggacttct
tttccttccaaactcttttttttcgagaatatcttttaccattgcctgcg
tttctcacgtgcacagagctacatgccagcaaaaataacattccatatga
aattaaagtcaataaacattatttaaaaattataaatgatctggaaatat
tacacaggacacaagaaaccatccaggaaagagaatgagaggaaatgtga
agcctgaatgagtttcaggacagctgacccctcatatcaacattttaaca
attaggaatgattcctatgtatgataaaaaatgtgttgtattcgtggaac
cagagctggagactcttatgtgttcattgtatgtaggaaagatttatccc
atcaatgctgtatttttgtgtcaacttttatgaggaggcaccgtattgtg
aaggaatttatgaataccaggaatacgttgtcatccagcatcccatcacc
cagaaatctgcctccagaggaaagtgaatgtatcagattccacctttttt
aatatttatttttaataattgtaagtgccctgtagctgtcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147012126_147013345
seq2: B6Ng01-009G24.b_47_1257

seq1  GAATTCAGGAGGAAAGGCTAACTGGGGTAACTATTAACATATCAATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGGAAAGGCTAACTGGGGTAACTATTAACATATCAATGAAG  50

seq1  ACAGGGATTGGGATGGTGCTTTCTTGGCTCCTGGTTAACTCTTGGCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGATTGGGATGGTGCTTTCTTGGCTCCTGGTTAACTCTTGGCTTGA  100

seq1  CCTCTATTCTCCTTCTCATCTTCAATTCCCTTCCCCCCATCTAATGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTCTCCTTCTCATCTTCAATTCCCTTCCCCCCATCTAATGAACT  150

seq1  GGTTCAGTCTGGACCCAAAGAGATAACTCTGAATGCTTTCTCCCTCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTCTGGACCCAAAGAGATAACTCTGAATGCTTTCTCCCTCATGC  200

seq1  TGAAATACCAAAAATTAACCCCACCACAAGCCCAAGAACCAGGTATCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACCAAAAATTAACCCCACCACAAGCCCAAGAACCAGGTATCTTC  250

seq1  TTGCAGCTCTGCAGGTTGCATGTCTTAGGAAAATAATAAGGCCTCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCTCTGCAGGTTGCATGTCTTAGGAAAATAATAAGGCCTCACAGA  300

seq1  AAATGACAAGGGCATATAAAACCAGCTGTAGGAAGTGACCAAAGTCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAAGGGCATATAAAACCAGCTGTAGGAAGTGACCAAAGTCTATC  350

seq1  TCTTGGTCAAGATGTAATATTTTAAAAAGCTTTCCAACATTGTAGAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCAAGATGTAATATTTTAAAAAGCTTTCCAACATTGTAGAATTT  400

seq1  TTTTTTCTCTGACGACATTAAGGGTTAACAGAACCTACTATATATCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTGACGACATTAAGGGTTAACAGAACCTACTATATATCTTCT  450

seq1  CCTTAGTTGTTCATTGCTGCAAACCTGTTTTCATGCTTCAATGAAACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTTGTTCATTGCTGCAAACCTGTTTTCATGCTTCAATGAAACCTA  500

seq1  AGGTGTAACATTAATAACTAAGACTATGAAGACACATCTCTGGATGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAACATTAATAACTAAGACTATGAAGACACATCTCTGGATGCTGT  550

seq1  ATTTACATCAATGACTACATATAACTCAGTGTGAAACTAACGGAGACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATCAATGACTACATATAACTCAGTGTGAAACTAACGGAGACTAT  600

seq1  AACTTTGTTAGGTTAATGTGAATATATACAGCCATATGATGGTGCTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTTAGGTTAATGTGAATATATACAGCCATATGATGGTGCTTTAT  650

seq1  AACGTAAATTTTCTAATTCAATCAAATCTTCACCAATTCCCCATATGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAAATTTTCTAATTCAATCAAATCTTCACCAATTCCCCATATGACA  700

seq1  AATATCTACAAGGCTCTCTCAGGATGCCTACTCAGTTCCCTGGAGAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTACAAGGCTCTCTCAGGATGCCTACTCAGTTCCCTGGAGAAAGG  750

seq1  GAAATGAAATGGCAAATGAAGGAACAGGGGAG-TTAAGAAAGCAGGAACG  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAATGAAATGGCAAATGAAGGAACAGGGGAGTTTAAGAAAGCAGGAACG  800

seq1  AATTTGAATTACAGTTGCTTTATAAAGGCTTTTGCAAAGACAAACCTCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAATTACAGTTGCTTTATAAAGGCTTTTGCAAAGACAAACCTCCC  850

seq1  GGTATACAAACTCCAGATGCAGCCAAGGATCTACAAGGATACTTTAGAAA  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTATACAAACTCTAGATGCAGCCAAGGATCTACAAGGATACTTTAGAAA  900

seq1  AATATTCTGGCAACCATAAAATTGATTAAAACATCATCATGAACCAAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTGGCAACCATAAAATTGATTAAAACATCATCATGAACCAAAAT  950

seq1  CACAGGATCTCAAACTTCCTGACAATGGTAAGATATCCACAACAGATTGT  999
      ||||||||||||||||||||||| ||||| |||||| ||| |||||||||
seq2  CACAGGATCTCAAACTTCCTGAC-ATGGT-AGATAT-CAC-ACAGATTGT  996

seq1  GAGAGTAGCGACAGAAAATGCACCCCTGCTCCACGTGCCTGCCCTGCTCC  1049
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  GAGAGTAGCGACAGAAAATGCACCCCTGCTCTACGTGCCTGCCCTGCTTC  1046

seq1  TGCCCATTTCCTAGTACAACAGCTCCTCTGACCTGGAAGGCAACAGGACC  1099
      || ||||||||||||||||||||| |||||| |||||||   |||||| |
seq2  TG-CCATTTCCTAGTACAACAGCTTCTCTGAACTGGAAG--CACAGGA-C  1092

seq1  AGCTGCTGAATGTC-CTAGGAGGCCAGCAAGGAAATTTTCAGGTTCT-GC  1147
      |||||||||||||| |||||| | |||||||  |||||||||||||| ||
seq2  AGCTGCTGAATGTCTCTAGGAAG-CAGCAAG--AATTTTCAGGTTCTGGC  1139

seq1  AA-ATACTAGGCACTAGTCT-TCCTCCAGGAC-ATCCT-GACCACAAGGC  1193
      || |||| ||| |||||||| | || |||||| ||||| |||  ||||| 
seq2  AATATAC-AGG-ACTAGTCTCTTCTTCAGGACAATCCTGGACACCAAGGT  1187

seq1  AGCCAAGGTACAAGGAGAATGCTGAAA  1220
      |||||  || |||||  ||||||||||
seq2  AGCCA--GT-CAAGGGAAATGCTGAAA  1211

seq1: chr4_147133077_147134227
seq2: B6Ng01-009G24.g_67_1209 (reverse)

seq1  GAAGACAGCTACAGTGCACTTACATATAATAAATAAATAAAATATTAAAA  50
      |||||||||||||| |||||||||  || |||  |||| |||||||||||
seq2  GAAGACAGCTACAGGGCACTTACAATTATTAA--AAAT-AAATATTAAAA  47

seq1  AAATGGTGGAATCTGATACAATTCACTTTCCTTCTGGA-GCAGATTTCTT  99
      ||  ||||||||||||||| ||||||||||| |||||| ||||||||| |
seq2  AA--GGTGGAATCTGATAC-ATTCACTTTCC-TCTGGAGGCAGATTTC-T  92

seq1  GGTTGATGGGATGCTGGATAACAACGTATTCCT-GTA-TCATAAATTCCT  147
      || |||||||||||||||| ||||||||||||| ||| ||||||||||||
seq2  GGGTGATGGGATGCTGGATGACAACGTATTCCTGGTATTCATAAATTCCT  142

seq1  TCACAATTACGGTGCCTCCTCATAAAAGTTGACACAAAAATACAGCATTG  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAA-TACGGTGCCTCCTCATAAAAGTTGACACAAAAATACAGCATTG  191

seq1  ATGGGATAAATCTTTTCCTACATTACAATGAACACATAAGAGTCTCCAGC  247
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  ATGGGATAAATC-TTTCCTACA-TACAATGAACACATAAGAGTCTCCAGC  239

seq1  TCTGGGTTCCACGAATACAACACA-TTTTTATCATACATAGGAATCATTC  296
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCT-GGTTCCACGAATACAACACATTTTTTATCATACATAGGAATCATTC  288

seq1  CTAATTGTTAAAATGTTGATATGAGGGGTCAGCTGTCCTGAAACTCATTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTTAAAATGTTGATATGAGGGGTCAGCTGTCCTGAAACTCATTC  338

seq1  AGGCTTCACATTTCCTCTCATTCTCTTTCCTGGATGGTTTCTTGTGTCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCACATTTCCTCTCATTCTCTTTCCTGGATGGTTTCTTGTGTCCT  388

seq1  GTGTAATATTTCCAGATCATTTATAATTTTTAAATAATGTTTATTGACTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATATTTCCAGATCATTTATAATTTTTAAATAATGTTTATTGACTT  438

seq1  TAATTTCATATGGAATGTTATTTTTGCTGGCATGTAGCTCTGTGCACGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATATGGAATGTTATTTTTGCTGGCATGTAGCTCTGTGCACGTG  488

seq1  AGAAACGCAGGCAATGGTAAAAGATATTCTCGAAAAAAAAGAGTTTGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACGCAGGCAATGGTAAAAGATATTCTCGAAAAAAAAGAGTTTGGAA  538

seq1  GGAAAAGAAGTCCCCAGGCAGGTACAGAAAACTGAATCTGAATACTGCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAAGTCCCCAGGCAGGTACAGAAAACTGAATCTGAATACTGCAA  588

seq1  GAAGAAGAGAGCTTAACTGCAGAGCCACATCTTTGACCCTTAATTAGCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAGAGCTTAACTGCAGAGCCACATCTTTGACCCTTAATTAGCTC  638

seq1  CTGTGGAGACATAAATAAATATGCTTAATAATAATTTCTCTAATACCATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGACATAAATAAATATGCTTAATAATAATTTCTCTAATACCATA  688

seq1  TGGTCTTTCACTATAAAATGATTAGCTATGTATGTTTAAGCAAATATCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTCACTATAAAATGATTAGCTATGTATGTTTAAGCAAATATCAT  738

seq1  ATGTGGCAATGCATTCCAATGGAGTATAATAATTTTTGATCAAACTGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAATGCATTCCAATGGAGTATAATAATTTTTGATCAAACTGTGT  788

seq1  TTTTAAATTGAGGGAGAATTATACTAAATATTCATTAAAATCTAATAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTGAGGGAGAATTATACTAAATATTCATTAAAATCTAATAAAT  838

seq1  TATTCCTCATTGTATTAACCTAACTGAAAATTTCAGTATTCTAATTTTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCATTGTATTAACCTAACTGAAAATTTCAGTATTCTAATTTTAA  888

seq1  CTTTTTTCTTCAGAATTTGACCATATGTATATCACAATTGCACTTTTCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTTCAGAATTTGACCATATGTATATCACAATTGCACTTTTCAT  938

seq1  AGAAGTGTAATCTATCATTCTTCCCTTGTTTATCAAAAATTATAATATAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGTAATCTATCATTCTTCCCTTGTTTATCAAAAATTATAATATAC  988

seq1  AGACTATATACTGTCTTTATTGCAAATATGCCTCAAAAAATGTAAATCTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATATACTGTCTTTATTGCAAATATGCCTCAAAAAATGTAAATCTA  1038

seq1  CTCCATGAACAAATGATTAAAGGGTAAAGGTACTTGCTGTTTCTACTTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAACAAATGATTAAAGGGTAAAGGTACTTGCTGTTTCTACTTTA  1088

seq1  AAAACTAATCTAATTCTCTCTAAATATATTGCAGCTCACTATTATGTCTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAATCTAATTCTCTCTAAATATATTGCAGCTCACTATTATGTCTG  1138

seq1  AATTC  1151
      |||||
seq2  AATTC  1143