BAC Information

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BAC

Clone NameB6Ng01-009I08
ChromosomeY (Build37)4 (Build37)
Map Location 1,120,587 - 1,120,71435,441,475 - 35,442,556
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009I08.bB6Ng01-009I08.g
ACCDH845439DH845440
length4941,073
definitionDH845439|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I08, 5' end.DH845440|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,587 - 1,120,714)(35,441,475 - 35,442,556)
sequence
tcaactgagaatactgaatggctgagaagcactcccaaaaagatcaacat
ccttagtcatcagggaaatgcaaatcaaaacaatcctaagattccacctc
acaccagtcagaatggctaagatcaaaagttcaggtgacagcagatgctg
gtgaggatgtggagaaagaggaacactcctccgtttctagtgggattgca
agctggtacaaccactatggagatcagtttggcagttcctcagaaaattc
aacataatactaccggaagatccagctatgccacccctgggtatataacc
agaagatgctccaactggtaataaggacatatgctccactatgttcatag
cagccttatttatttattttttttccattttttattaggtatttagctca
tttacatttccaatgctataccaaaagtcccccatacccacccaccccca
ctcccctacccacctactccccctttttggccctggtgttcccc
gaattctaagtcactgtgtcgttagcacagctgagttgataggaatgaag
atggagcctttagtccaattctcttatttcatagatgagaaacaggcaca
gacagacgatgtgattagcataatgtcatgctaactagcaagctaagtcc
tgagatcatattctttgagtaattttaatggaaaaattgctcttgctgtt
ataatccttctcccgtttgatcactgagctttggtttgaattttttctct
aaatatatgcaattgaacattctgaattaagttttttgaattttgtacct
ctgtcaaattattacttgaatttgcatttcatggttaataaaatctgaca
ttcaatgtatcactccagaaacactaaaatttaccagttagacagaaact
tatggctatttccttagtacttccatgttaggaatttaacctccttggga
ctaatgaatgatttgtctttcaacaacgtgtcagaaattaatgttcacgt
acatccctggtctgtaccacagtcctaagttctgtccttggtggtctgga
actttctgtttgcctggagactaagaagctccaatttctcagttacagag
tcagaattctagggctttatagttctttaagaagccattggcctactcct
tggaatgctttaagttagatttcttgatccaatgtgtcagacacctatta
aacctctgctgttcagtttagtagactggactggagttgggtgctgtgtc
ctctttggcacacacaattgtccttcagacatttgcccattacatagtgt
tgcagatttttgctcattggtatattcactgttaattatcccttgagttc
agagatatgagcttactagcttttagctcagcacagagtgggatcttaat
aaattctcattaatgaatgatggaggtcctcaagtaagtcctatttcatt
ataaagtgtactgaaagtcagagtctgtcgaatttacattttggatccct
agctagttcttcataagaagaccatataaatagccaatagaaaaaagtta
tttttaaggaaaaaagatgaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120587_1120714
seq2: B6Ng01-009I08.b_419_546

seq1  TTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGC  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGC  50

seq1  TATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCA  100
      |||||||||||||||||||| |||||||||||||||||||| |||||| |
seq2  TATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCACCTA  100

seq1  CTCCCCCTTTTTGGCCCTGGTATTCCCC  128
      ||||||||||||||||||||| ||||||
seq2  CTCCCCCTTTTTGGCCCTGGTGTTCCCC  128

seq1: chr4_35441475_35442556
seq2: B6Ng01-009I08.g_68_1140

seq1  GAATTCTAAGTCACTGTGTCGTTAGCACAGCTGAGTTGATAGGAATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTCACTGTGTCGTTAGCACAGCTGAGTTGATAGGAATGAAG  50

seq1  ATGGAGCCTTTAGTCCAATTCTCTTATTTCATAGATGAGAAACAGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCCTTTAGTCCAATTCTCTTATTTCATAGATGAGAAACAGGCACA  100

seq1  GACAGACGATGTGATTAGCATAATGTCATGCTAACTAGCAAGCTAAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACGATGTGATTAGCATAATGTCATGCTAACTAGCAAGCTAAGTCC  150

seq1  TGAGATCATATTCTTTGAGTAATTTTAATGGAAAAATTGCTCTTGCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCATATTCTTTGAGTAATTTTAATGGAAAAATTGCTCTTGCTGTT  200

seq1  ATAATCCTTCTCCCGTTTGATCACTGAGCTTTGGTTTGAATTTTTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTTCTCCCGTTTGATCACTGAGCTTTGGTTTGAATTTTTTCTCT  250

seq1  AAATATATGCAATTGAACATTCTGAATTAAGTTTTTTGAATTTTGTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATGCAATTGAACATTCTGAATTAAGTTTTTTGAATTTTGTACCT  300

seq1  CTGTCAAATTATTACTTGAATTTGCATTTCATGGTTAATAAAATCTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAATTATTACTTGAATTTGCATTTCATGGTTAATAAAATCTGACA  350

seq1  TTCAATGTATCACTCCAGAAACACTAAAATTTACCAGTTAGACAGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTATCACTCCAGAAACACTAAAATTTACCAGTTAGACAGAAACT  400

seq1  TATGGCTATTTCCTTAGTACTTCCATGTTAGGAATTTAACCTCCTTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTATTTCCTTAGTACTTCCATGTTAGGAATTTAACCTCCTTGGGA  450

seq1  CTAATGAATGATTTGTCTTTCAACAACGTGTCAGAAATTAATGTTCACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAATGATTTGTCTTTCAACAACGTGTCAGAAATTAATGTTCACGT  500

seq1  ACATCCCTGGTCTGTACCACAGTCCTAAGTTCTGTCCTTGGTGGTCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTGGTCTGTACCACAGTCCTAAGTTCTGTCCTTGGTGGTCTGGA  550

seq1  ACTTTCTGTTTGCCTGGAGACTAAGAAGCTCCAATTTCTCAGTTACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGTTTGCCTGGAGACTAAGAAGCTCCAATTTCTCAGTTACAGAG  600

seq1  TCAGAATTCTAGGGCTTTATAGTTCTTTAAGAAGCCATTGGCCTACTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTCTAGGGCTTTATAGTTCTTTAAGAAGCCATTGGCCTACTCCT  650

seq1  TGGAATGCTTTAAGTTAGATTTCTTGATCCAATGTGTCAGACACCTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCTTTAAGTTAGATTTCTTGATCCAATGTGTCAGACACCTATTA  700

seq1  AACCTCTGCTGTTCAGTTTAGTAGACTGGACTGGAGTTGGGTGCTGTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTGCTGTTCAGTTTAGTAGACTGGACTGGAGTTGGGTGCTGTGTC  750

seq1  CTCTTTGGCACACACAATTGTCCTTCAGACATTTGCCCATTACATAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGCACACACAATTGTCCTTCAGACATTTGCCCATTACATAGTGT  800

seq1  TGCAGA-TTTTGCTCATTGGTATATTCACTGTTAATTAT-CCTTGAGTTC  848
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCAGATTTTTGCTCATTGGTATATTCACTGTTAATTATCCCTTGAGTTC  850

seq1  AGAGATATGAGCTTACTAGCTTTTAGCTCAGCACAGAGTGGGAGCTTAAT  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGAGATATGAGCTTACTAGCTTTTAGCTCAGCACAGAGTGGGATCTTAAT  900

seq1  AAATTCTCATTAATGAATGATGGAGGTCCTCAAGTAAGTCCTATTTCATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCATTAATGAATGATGGAGGTCCTCAAGTAAGTCCTATTTCATT  950

seq1  ATAAAGTGTACTGAAAGCCAGAGTCTGTCGAATTTTACCATTTTGGATCC  998
      ||||||||||||||||| |||||||||||||||||   ||||||||||||
seq2  ATAAAGTGTACTGAAAGTCAGAGTCTGTCGAATTT--ACATTTTGGATCC  998

seq1  CTAGCTAGTTCCTCAATAAGAAGACCAATATAAAATAGCCAATTAGAAAA  1048
      ||||||||||| || ||||||||||| |||| |||||||||| |||||||
seq2  CTAGCTAGTTCTTC-ATAAGAAGACC-ATAT-AAATAGCCAA-TAGAAAA  1044

seq1  TATGTTATTTTTTAATGAAAATAAAAGATGAATC  1082
       | |||| ||||||| |||   ||||||||||||
seq2  -AAGTTA-TTTTTAAGGAA---AAAAGATGAATC  1073