BAC Information

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BAC

Clone NameB6Ng01-009I15
Chromosome4 (Build37)
Map Location 136,027,950 - 136,183,802
singlet/doubletdoublet
Overlap geneLuzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684
Upstream geneNpal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540
Downstream geneEphb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009I15.bB6Ng01-009I15.g
ACCDH845453DH845454
length7491,024
definitionDH845453|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I15, 5' end.DH845454|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,183,054 - 136,183,802)(136,027,950 - 136,028,982)
sequence
gaattcattttgcagacttatagtaccttctgtccatcacagcttggtag
tttgagcaacatggccctgaacggcctgcccagctggagtctgttttcct
gagcaataaagaagtcccttgaaatggaatttaccccagaaaagactggg
gtgggagaaggagatttgggggagacactaagaggagctgtgtctgcagt
agctctaggggtctgggagccccagcacctcactgaacaccagtctttgt
cagtatgaataacagggctgggagaggctactccccagtgcaatggagac
ttggggtcctgggtgccatagcaacagaggattgtgcccctctggagtgc
taggtagaatgaagcagtcttgggaagggagaagggctaggccagcccac
agaacaagagaaacattgtttaaatctttttttttaaacaggttttctct
gtgtagccctggctgtcctggaactcactctgcagaccagactagcctcg
aactcagagatccatctgcctctgcttcctaagtgctggttataaaaggg
catgccatccccacctgcccagctaaatttttaaaactaaaattttaaat
tgtatgtatgggggggggcactcatgcatgcacatatgcacacgtgcaca
tgcgggtcatggcatgtatggaggtcagagctcgagtttgtggaatgagt
tctgtccttcaatttttacatgggtcctggtgtggaacttaagttgtgg
gaattcaaaagacaagtcagcttggaaagcccacagttctctccaccatg
ctgccttgggaactgaggaacttagtttctgcatttttaagtcagcccac
tgggtcactgaggtccttagagtaagtcactcaagtattttacaataagt
agccttcttccagagtgttgtcagtatgctttggtggcatgttttttggt
acaaagactatataaaaatatatactttatatagtagatgcttaatgttt
tgcttatgttggattaaaacaatgaatgtattacgttgctcataatttca
tctatataatggaacttggtagaaagttgtaatgatcctacagtagaggc
caccattaaggtgacattcaggatccagaaattaaaacattttcatgtaa
cagttttgggacagtaataactcagtaaagcacactgcttgtgtgactca
gataatccaacctgcaggatttgctacaaattttgatgcacataatcgac
aaaatttatttgctgagtgaatgaatgtatgttattgatatataatttat
ataagatataattagccagtgttaggtgtatagtttgagctttgctaaag
ttatagagttgtacagttgtgaagtgattacctttattcttttaaatttt
aaggaattggtaacagattgatcccaaggaaggttaggtttctgcgctta
gattttatactgtgaaaatcagaataaacactagggtgtctgtatgccag
gttgggtaggaaatagggaaaccttaaatatttaatgctgagcataagag
atgaagtaatgattatatttggaaagaatagattttggttacttcaaggt
caaagatatatttttgctaaagtaaccctagttaaagcttcatttatttt
atttgtttgttttttgagacaggttcctctgtgtagcactggcaatcctg
aattctgaaacaagctagttctcaattctcgagaatttttctggcttcca
aggttgtgccaacaccatctgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136183054_136183802
seq2: B6Ng01-009I15.b_45_793 (reverse)

seq1  CCACAACTTGAGTTCCACCCCCAGGA-CCATGTGAAGGTTGAAGGACAGA  49
      ||||||||| ||||||| | |||||| |||||| ||  ||||||||||||
seq2  CCACAACTTAAGTTCCA-CACCAGGACCCATGTAAAAATTGAAGGACAGA  49

seq1  ACTCATTCCACAAACTCGAGCTCTGACCTCCATACATGCCATGACCCGCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCCACAAACTCGAGCTCTGACCTCCATACATGCCATGACCCGCA  99

seq1  TGTGCACGTGTGCATATGTGCATGCATGAGTGCCCCCCCCCATACATACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACGTGTGCATATGTGCATGCATGAGTGCCCCCCCCCATACATACA  149

seq1  ATTTAAAATTTTAGTTTTAAAAATTTAGCTGGGCAGGTGGGGATGGCATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATTTTAGTTTTAAAAATTTAGCTGGGCAGGTGGGGATGGCATG  199

seq1  CCCTTTTATAACCAGCACTTAGGAAGCAGAGGCAGATGGATCTCTGAGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTATAACCAGCACTTAGGAAGCAGAGGCAGATGGATCTCTGAGTT  249

seq1  CGAGGCTAGTCTGGTCTGCAGAGTGAGTTCCAGGACAGCCAGGGCTACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCTAGTCTGGTCTGCAGAGTGAGTTCCAGGACAGCCAGGGCTACAC  299

seq1  AGAGAAAACCTGTTTAAAAAAAAAGATTTAAACAATGTTTCTCTTGTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACCTGTTTAAAAAAAAAGATTTAAACAATGTTTCTCTTGTTCT  349

seq1  GTGGGCTGGCCTAGCCCTTCTCCCTTCCCAAGACTGCTTCATTCTACCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGGCCTAGCCCTTCTCCCTTCCCAAGACTGCTTCATTCTACCTA  399

seq1  GCACTCCAGAGGGGCACAATCCTCTGTTGCTATGGCACCCAGGACCCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCAGAGGGGCACAATCCTCTGTTGCTATGGCACCCAGGACCCCAA  449

seq1  GTCTCCATTGCACTGGGGAGTAGCCTCTCCCAGCCCTGTTATTCATACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATTGCACTGGGGAGTAGCCTCTCCCAGCCCTGTTATTCATACTG  499

seq1  ACAAAGACTGGTGTTCAGTGAGGTGCTGGGGCTCCCAGACCCCTAGAGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACTGGTGTTCAGTGAGGTGCTGGGGCTCCCAGACCCCTAGAGCT  549

seq1  ACTGCAGACACAGCTCCTCTTAGTGTCTCCCCCAAATCTCCTTCTCCCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGACACAGCTCCTCTTAGTGTCTCCCCCAAATCTCCTTCTCCCAC  599

seq1  CCCAGTCTTTTCTGGGGTAAATTCCATTTCAAGGGACTTCTTTATTGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTTTTCTGGGGTAAATTCCATTTCAAGGGACTTCTTTATTGCTC  649

seq1  AGGAAAACAGACTCCAGCTGGGCAGGCCGTTCAGGGCCATGTTGCTCAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAGACTCCAGCTGGGCAGGCCGTTCAGGGCCATGTTGCTCAAA  699

seq1  CTACCAAGCTGTGATGGACAGATGGTACTATAAGTCTGCAAAATGAATTC  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTACCAAGCTGTGATGGACAGAAGGTACTATAAGTCTGCAAAATGAATTC  749

seq1: chr4_136027950_136028982
seq2: B6Ng01-009I15.g_69_1092

seq1  GAATTCAAAAGTCAAGTCAGCTTGGAAAGCCCACAGTTCTCTCCACCATG  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGACAAGTCAGCTTGGAAAGCCCACAGTTCTCTCCACCATG  50

seq1  CTGCCTTGGGAACTGAGGAACTTAGTTTCTGCATTTTTAAGTCAGCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGGGAACTGAGGAACTTAGTTTCTGCATTTTTAAGTCAGCCCAC  100

seq1  TGGGTCACTGAGGTCCTTAGAGTAAGTCACTCAAGTATTTTACAATAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCACTGAGGTCCTTAGAGTAAGTCACTCAAGTATTTTACAATAAGT  150

seq1  AGCCTTCTTCCAGAGTGTTGTCAGTATGCTTTGGTGGCATGTTTTTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTTCCAGAGTGTTGTCAGTATGCTTTGGTGGCATGTTTTTTGGT  200

seq1  ACAAAGACTATATAAAAATATATACTTTATATAGTAGATGCTTAATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACTATATAAAAATATATACTTTATATAGTAGATGCTTAATGTTT  250

seq1  TGCTTATGTTGGATTAAAACAATGAATGTATTACGTTGCTCATAATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGTTGGATTAAAACAATGAATGTATTACGTTGCTCATAATTTCA  300

seq1  TCTATATAATGGAACTTGGTAGAAAGTTGTAATGATCCTACAGTAGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATAATGGAACTTGGTAGAAAGTTGTAATGATCCTACAGTAGAGGC  350

seq1  CACCATTAAGGTGACATTCAGGATCCAGAAATTAAAACATTTTCATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTAAGGTGACATTCAGGATCCAGAAATTAAAACATTTTCATGTAA  400

seq1  CAGTTTTGGGACAGTAATAACTCAGTAAAGCACACTGCTTGTGTGACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGGGACAGTAATAACTCAGTAAAGCACACTGCTTGTGTGACTCA  450

seq1  GATAATCCAACCTGCAGGATTTGCTACAAATTTTGATGCACATAATCGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCCAACCTGCAGGATTTGCTACAAATTTTGATGCACATAATCGAC  500

seq1  AAAATTTATTTGCTGAGTGAATGAATGTATGTTATTGATATATAATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATTTGCTGAGTGAATGAATGTATGTTATTGATATATAATTTAT  550

seq1  ATAAGATATAATTAGCCAGTGTTAGGTGTATAGTTTGAGCTTTGCTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATATAATTAGCCAGTGTTAGGTGTATAGTTTGAGCTTTGCTAAAG  600

seq1  TTATAGAGTTGTACAGTTGTGAAGTGATTACCTTTATTCTTTTAAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGTTGTACAGTTGTGAAGTGATTACCTTTATTCTTTTAAATTTT  650

seq1  AAGGAATTGGTAACAGATTGATCCCAAGGAAGGTTAGGTTTCTGCGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTGGTAACAGATTGATCCCAAGGAAGGTTAGGTTTCTGCGCTTA  700

seq1  GATTTTATACTGTG-AAATCAGAATAAACACTAGGGTGTCTGTATGCCAG  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATTTTATACTGTGAAAATCAGAATAAACACTAGGGTGTCTGTATGCCAG  750

seq1  GTT-GGTAGGAAATAGGGAAACCTTAAATATTTAATGCTGAGCATAAGAG  798
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTAGGAAATAGGGAAACCTTAAATATTTAATGCTGAGCATAAGAG  800

seq1  ATGAAGTAATGATTATATTTGGAAAGAAGTAGATTTTGGTTACTTCAAGG  848
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGAAGTAATGATTATATTTGGAAAGAA-TAGATTTTGGTTACTTCAAGG  849

seq1  TCAAAGGATATATTTTTGCTAAAAGTAACCCTAGTTAAAGCTTCATTTTA  898
      ||||| |||||||||||||| |||||||||||||||||||||||| ||||
seq2  TCAAA-GATATATTTTTGCT-AAAGTAACCCTAGTTAAAGCTTCA-TTTA  896

seq1  TTTTATTTGTTTTGTTTTTTGAAGACAGGGTTTCTCTGTGTAGCACTGGC  948
      ||||||||| ||||||||||| ||||| |||| |||||||||||||||||
seq2  TTTTATTTG-TTTGTTTTTTG-AGACA-GGTTCCTCTGTGTAGCACTGGC  943

seq1  TATCCTGGAATTCTGTAGACCAAGCTAG-CCTCAAACTCCCAGAGATCTG  997
       ||||| ||||||||   | ||||||||  |||||    | ||| || | 
seq2  AATCCT-GAATTCTG--AAACAAGCTAGTTCTCAATTCTCGAGA-ATTTT  989

seq1  TCTGCCTCCCAAGTGCTGTGCCACCACCATCTGGCT  1033
      |||| || ||||| | ||||||| |||||||||| |
seq2  TCTGGCTTCCAAG-GTTGTGCCAACACCATCTGGGT  1024