BAC Information

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BAC

Clone NameB6Ng01-009J07
Chromosome4 (Build37)
Map Location 129,821,702 - 129,974,153
singlet/doubletdoublet
Overlap geneTinagl, Gm853, Serinc2
Upstream geneFndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1
Downstream geneFabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009J07.bB6Ng01-009J07.g
ACCDH845485DH845486
length772965
definitionDH845485|Mus musculus domesticus DNA, BAC clone: B6Ng01-009J07, 5' end.DH845486|Mus musculus domesticus DNA, BAC clone: B6Ng01-009J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,973,631 - 129,974,153)(129,821,702 - 129,822,676)
sequence
gaattccttgaagagccctattaacttataactgacctgacattcccatg
acttaacagataaatttctctgtagacctccagcctgcaccagccctaag
gcgaagaaaccaagaaaacagtctgaacctcagaggagatatccttggtg
tgctgcggtccacccacccccttatctgactctctcacccagatgattgg
taaatatgtcgacttataactttcttttggttttaagaccaaagaaagca
ttcattcattctgatcagcctctctgtggtagagccccattccggacacc
cgtgaacctgtgttccccggccgtggttgatcatccttgactcagaaaaa
taacctttattttatttctttcaaagtagagttgtctttttacctgacga
ggagggtgtctgtggggctggggagacggctcaatgggtcacatgctttc
tgcacaagcctgactgcctgcgtttaggtccccagcacatatgtcaaatc
cgcacagcagtgtgggcctgttactccagagctggcggtaagggctaaga
taggtggattccaggggcttgctggcagccgttttaggtgaaatggtgga
ctccagacttaaagttgatgatggaggaaaacagcctggggctagagaga
tggctcagtggttaggagcactgactcctctgcccgaggacctgggttca
attcccagtatccattctgtctgtggctcacagacatctgtatctccagc
tccaggagtttagaaagccctc
gaattcattaggatgtgggctctcagcatggagatcaactcacattgatg
ttatagtatgtgagtgcacatatacgtacacacacacacacacacacaca
cacacacacatgccactggttaaaatcaaacaccagtagcttttcccata
gggaggcttgtgggaggacttcctgagaccaggcaggcatggagagtgtc
aggaccaggcatcagcaagatgaggactgacatccttggatgcatgatca
ttcaatattaggcttccattttaaaatcccagcagtcatgggggaagaat
taaccccatcagacaggcttccgcttaacttgtggtttgatattgcaaat
attctgagcgctagggtcttgtgagagcctccaaattattaaatgacact
actattaatatcttaaggtttctgttgctgtaatgaaacactatgaccag
gaaggcttggagaggaaagggtttctattgcttacacctcccaaatcacc
gcctggtcctctgagggaagccaagacaggaactcaaactgagcaggaac
ctggaggcagaagctggtgcggaggccatggaggagtcctgctgtttgct
ggcttgttcatcctgcttttattatagaacccaagaccaccagtccaggg
gtttcgccactcacagtggcctggactctccctacactgatcagtaatta
agaaaatgtcttacaggcctgtttccagctgcgtattctggaggcatttt
ctccattgaagctcctttctctcagatgactacagcttgtgtcaagttga
cacaaacctagtcagcgcaattagtgaacaatagccactgtgaatgcgta
tgggtgtggttatctgatacaaaaaaacaaatgacaaaaatcacgaatgg
ttgttcctctgggtgactgggtatgaaaggtctaacacgtagggggtggg
cagtttcagaacgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129973631_129974153
seq2: B6Ng01-009J07.b_48_570 (reverse)

seq1  TAACAGGCCCACACTGCTGTGCGGATTTGACATATGTGCTGGGGACCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGCCCACACTGCTGTGCGGATTTGACATATGTGCTGGGGACCTAA  50

seq1  ACGCAGGCAGTCAGGCTTGTGCAGAAAGCATGTGACCCACTGAGCCGTCT  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACGCAGGCAGTCAGGCTTGTGCAGAAAGCATGTGACCCATTGAGCCGTCT  100

seq1  CCCCAGCCCCACAGACACCCTCCTCGTCAGGTAAAAAGACAACTCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCCACAGACACCCTCCTCGTCAGGTAAAAAGACAACTCTACTT  150

seq1  TGAAAGAAATAAAATAAAGGTTATTTTTCTGAGTCAAGGATGATCAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAATAAAATAAAGGTTATTTTTCTGAGTCAAGGATGATCAACCA  200

seq1  CGGCCGGGGAACACAGGTTCACGGGTGTCCGGAATGGGGCTCTACCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGGGGAACACAGGTTCACGGGTGTCCGGAATGGGGCTCTACCACAG  250

seq1  AGAGGCTGATCAGAATGAATGAATGCTTTCTTTGGTCTTAAAACCAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGATCAGAATGAATGAATGCTTTCTTTGGTCTTAAAACCAAAAG  300

seq1  AAAGTTATAAGTCGACATATTTACCAATCATCTGGGTGAGAGAGTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATAAGTCGACATATTTACCAATCATCTGGGTGAGAGAGTCAGAT  350

seq1  AAGGGGGTGGGTGGACCGCAGCACACCAAGGATATCTCCTCTGAGGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGTGGGTGGACCGCAGCACACCAAGGATATCTCCTCTGAGGTTCA  400

seq1  GACTGTTTTCTTGGTTTCTTCGCCTTAGGGCTGGTGCAGGCTGGAGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTCTTGGTTTCTTCGCCTTAGGGCTGGTGCAGGCTGGAGGTCT  450

seq1  ACAGAGAAATTTATCTGTTAAGTCATGGGAATGTCAGGTCAGATATAAGT  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACAGAGAAATTTATCTGTTAAGTCATGGGAATGTCAGGTCAGTTATAAGT  500

seq1  TAATAGGGCTCTTCAAGGAATTC  523
      |||||||||||||||||||||||
seq2  TAATAGGGCTCTTCAAGGAATTC  523

seq1: chr4_129821702_129822676
seq2: B6Ng01-009J07.g_68_1032

seq1  GAATTCATTAGGATGTGGGCTCTCAGCATGGAGATCAGCTCACATTGATG  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAATTCATTAGGATGTGGGCTCTCAGCATGGAGATCAACTCACATTGATG  50

seq1  TTATAGTATGTGAGTGCACATATACGTACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTATGTGAGTGCACATATACGTACACACACACACACACACACACA  100

seq1  CACACACACATGCCACTGGTTAAAATCAAACACCAGTAGCTTTTCCCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATGCCACTGGTTAAAATCAAACACCAGTAGCTTTTCCCATA  150

seq1  GGGAGGCTTGTGGGAGGACTTCCTGAGACCAGGCAGGCATGGAGAGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCTTGTGGGAGGACTTCCTGAGACCAGGCAGGCATGGAGAGTGTC  200

seq1  AGGACCAGGCATCAGCAAGATGAGGACTGACATCCTTGGATGCATGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGGCATCAGCAAGATGAGGACTGACATCCTTGGATGCATGATCA  250

seq1  TTCAATATTAGGCTTCCATTTTAAAATCCCAGCAGTCATGGGGGAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATTAGGCTTCCATTTTAAAATCCCAGCAGTCATGGGGGAAGAAT  300

seq1  TAACCCCATCAGACAGGCTTCCGCTTAACTTGTGGTTTGATATTGCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCATCAGACAGGCTTCCGCTTAACTTGTGGTTTGATATTGCAAAT  350

seq1  ATTCTGAGCGCTAGGGTCTTGTGAGAGCCTCCAAATTATTAAATGACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGCGCTAGGGTCTTGTGAGAGCCTCCAAATTATTAAATGACACT  400

seq1  ACTATTAATATCTTAGGGTTTCTGTTGCTGTAATGAAACACTATGACCAG  450
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTATTAATATCTTAAGGTTTCTGTTGCTGTAATGAAACACTATGACCAG  450

seq1  GAAGGCTTGGAGAGGAAAGGGTTTCTATTGCTTACACCTCCCAAATCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTGGAGAGGAAAGGGTTTCTATTGCTTACACCTCCCAAATCACC  500

seq1  GCCTGGTCCTCTGAGGGAAGCCAAGACAGGAACTCAAACTGAGCAGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCCTCTGAGGGAAGCCAAGACAGGAACTCAAACTGAGCAGGAAC  550

seq1  CTGGAGGCAGAAGCTGGTGCGGAGGCCATGGAGGAGTCCTGCTGTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCAGAAGCTGGTGCGGAGGCCATGGAGGAGTCCTGCTGTTTGCT  600

seq1  GGCTTGTTCATCCTGCTTTTATTATAGAACCCAGGACCACCAGTCCAGGG  650
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCTTGTTCATCCTGCTTTTATTATAGAACCCAAGACCACCAGTCCAGGG  650

seq1  GTTTCGCCACTCACAGTGGCCTGGACTCTCCCTACACTGATCAGTAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGCCACTCACAGTGGCCTGGACTCTCCCTACACTGATCAGTAATTA  700

seq1  AGAAAATGCCTTACAGGCCTGTTTCCAGCTGCGTATTCTGGAGGCATTTT  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTCTTACAGGCCTGTTTCCAGCTGCGTATTCTGGAGGCATTTT  750

seq1  CTCCATTGAAGCTCCTTTCTCTCAGATGACTACAGCTTGTGTCAAGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGAAGCTCCTTTCTCTCAGATGACTACAGCTTGTGTCAAGTTGA  800

seq1  CACAAACCTAGTCAGCGCAATTAGTGAACAATAGCCACTGTGAATGCGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCTAGTCAGCGCAATTAGTGAACAATAGCCACTGTGAATGCGTA  850

seq1  TGGGTGTGGTTATTCTGACACAAAAAAACCAGAAGGAACAAAAATCAAGA  900
      |||||||||||| ||||| ||||||||||   ||   |||||||||| | 
seq2  TGGGTGTGGTTA-TCTGATACAAAAAAAC---AAATGACAAAAATCACG-  895

seq1  AATGGCTTGTTCCTCTGGGGTGATCTGGGTATGAGAGGTCAGAACACGTA  950
      ||||| |||||||||| |||||| |||||||||| |||||  ||||||||
seq2  AATGG-TTGTTCCTCT-GGGTGA-CTGGGTATGAAAGGTC-TAACACGTA  941

seq1  GGGGGTGGGCAGGAGTCAGAACGAT  975
      ||||||||||| |  ||||||||||
seq2  GGGGGTGGGCA-GTTTCAGAACGAT  965