BAC Information

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BAC

Clone NameB6Ng01-009N09
Chromosome4 (Build37)
Map Location 129,278,943 - 129,423,137
singlet/doubletdoublet
Overlap gene2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1
Upstream geneTlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2
Downstream geneLOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009N09.bB6Ng01-009N09.g
ACCDH845671DH845672
length908787
definitionDH845671|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N09, 5' end.DH845672|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,278,943 - 129,279,848)(129,422,351 - 129,423,137)
sequence
gaattctgtacagagagatgaagctggaggacatggagtgggctacttag
aaggggtaacactgtcactcaaggccttataccagcagggacgatgggaa
ctggccatgacgagggagagggcatttaaggcaatagagtacattgaatg
cgtttctctgtttgctctaaggggtcttcaaacacatgagcggtccctga
gcatttgtaaccatgccaacccccgtgggaaggtgcaagccagaacaggg
actctcgaactgggtaacaactggcaaggggtctgacaccagatatcctg
catatcagatacttacgtgacagtccataactgtagtaaaattacagttg
tgaagtggcaatgaaaataattttatggttggggggtccccacaacatga
ggaactggattaaagggtcgcagcattaggaaggttgagaactgggaaag
ccgttgcacacgcaggcagcccctgacaggtctctcctctttctagtacc
tgatgccctttctcctcaatcagagtggatcccttctctactacttgact
ttggcatcaacaggtgggtctctggctcgggtcttctctggggtggacgc
catattttacgaagggaacctgaaagaccttgcacctgtcaatgaggcag
agcaccggtttctggtccttctgtgggtcacagggccagtgaggcgagtc
agtgtgcagcggcggcggcagcaggaggctcattgtggtctcctaagtgg
tgatgtcctttatcatctgggaggagggggttttcctgatacgtttgctg
tgtgtttgatggttgtttttcattttctattagatttaattttgtgtgtg
cacatgtgtcacaatgtgtgtttggtcagaggacaggttttaggagtaag
gttttcct
gaattctttctttttctttttaagatttattttatttatatgagtacact
gtagctgggaattgaactcaggactctgctcgctccagcctaaaaattta
tgattatgtgtaagtacactgtagctgtctttagacacaccaggagaggg
tgtcagatctcattaccaatgtttgtgagccaccatgtagttactgggat
ttgaactcaggactttcggaagagcagtcggtgctcttaactgctgagcc
agttctccagccccactagtgaattcttttttgtttgtttgtttttgttt
ttcgagacagggtttctctgtgtagctctggctgtcctggaactcactct
gtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctccca
agtgctgggattaaaggcgtgtgccaccatgcccggctcactagtgagtt
cttattgaaagccctgtctttgggcagataagggaaattcagaaaacttt
aacctgattgcctattggtaatgaatacatcaaggcgagatattggggga
tggcctttttgcaattctttctttggctagctttgataagtgattcaagc
acaaatgctagacacaagtagttaggtgactagaaaagagatacaaattt
acaaattaacattttagacatctttttcatgtggctatgatggcacatgc
ttttaatcctagaactctagaggcagaagcagaggggcagagagagagag
gcagagggagagggagagagagagggagaggggaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129278943_129279848
seq2: B6Ng01-009N09.b_48_955

seq1  GAATTCTGTACAGAGAGATGAAGCTGGAGGACATGGAGTGGGCTACTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACAGAGAGATGAAGCTGGAGGACATGGAGTGGGCTACTTAG  50

seq1  AAGGGGTAACACTGTCACTCAAGGCCTTATACCAGCAGGGACGATGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTAACACTGTCACTCAAGGCCTTATACCAGCAGGGACGATGGGAA  100

seq1  CTGGCCATGACGAGGGAGAGGGCATTTAAGGCAATAGAGTACATTGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATGACGAGGGAGAGGGCATTTAAGGCAATAGAGTACATTGAATG  150

seq1  CGTTTCTCTGTTTGCTCTAAGGGGTCTTCAAACACATGAGCGGTCCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCTCTGTTTGCTCTAAGGGGTCTTCAAACACATGAGCGGTCCCTGA  200

seq1  GCATTTGTAACCATGCCAACCCCCGTGGGAAGGTGCAAGCCAGAACAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTAACCATGCCAACCCCCGTGGGAAGGTGCAAGCCAGAACAGGG  250

seq1  ACTCTCGAACTGGGTAACAACTGGCAAGGGGTCTGACACCAGATATCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCGAACTGGGTAACAACTGGCAAGGGGTCTGACACCAGATATCCTG  300

seq1  CATATCAGATACTTACGTGACAGTCCATAACTGTAGTAAAATTACAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGATACTTACGTGACAGTCCATAACTGTAGTAAAATTACAGTTG  350

seq1  TGAAGTGGCAATGAAAATAATTTTATGGTTGGGGGGTCCCCACAACATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGCAATGAAAATAATTTTATGGTTGGGGGGTCCCCACAACATGA  400

seq1  GGAACTGGATTAAAGGGTCGCAGCATTAGGAAGGTTGAGAACTGGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGATTAAAGGGTCGCAGCATTAGGAAGGTTGAGAACTGGGAAAG  450

seq1  CCGTTGCACACGCAGGCAGCCCCTGACAGGTCTCTCCTCTTTCTAGTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGCACACGCAGGCAGCCCCTGACAGGTCTCTCCTCTTTCTAGTACC  500

seq1  TGATGCCCTTTCTCCTCAATCAGAGTGGATCCCTTCTCTACTACTTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCTTTCTCCTCAATCAGAGTGGATCCCTTCTCTACTACTTGACT  550

seq1  TTGGCATCAACAGGTGGGTCTCTGGCTCGGGTCTTCTCTGGGGTGGACGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCAACAGGTGGGTCTCTGGCTCGGGTCTTCTCTGGGGTGGACGC  600

seq1  CATATTTTACGAAGGGAACCTGAAAGACCTTGCACCTGTCAATGAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTACGAAGGGAACCTGAAAGACCTTGCACCTGTCAATGAGGCAG  650

seq1  AGCACCGGTTTCTGGTCCTTCTGTGGGTCACAGGGCCAGTGAGGCGAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGGTTTCTGGTCCTTCTGTGGGTCACAGGGCCAGTGAGGCGAGTC  700

seq1  AGTGTGCAGCGGCGGCGGCAGCAGGAGGCTCATTGTGGTCTCCTAAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCAGCGGCGGCGGCAGCAGGAGGCTCATTGTGGTCTCCTAAGTGG  750

seq1  TGATGTCCTTTATCATCTGGGAGGAGGGGGTTTTCCTGATACGTTTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCTTTATCATCTGGGAGGAGGGGGTTTTCCTGATACGTTTGCTG  800

seq1  TGTGTTTGATGGTTG-TTTTCATTTTCTATTAGAATTTATTTTGTGTGTG  849
      ||||||||||||||| |||||||||||||||||| || ||||||||||||
seq2  TGTGTTTGATGGTTGTTTTTCATTTTCTATTAGATTTAATTTTGTGTGTG  850

seq1  CACATGTGTCACAGTGTGTGTTTGGTCAGAGGACAGGTTTTAGGAGT-AG  898
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  CACATGTGTCACAATGTGTGTTTGGTCAGAGGACAGGTTTTAGGAGTAAG  900

seq1  GTTCTCCT  906
      ||| ||||
seq2  GTTTTCCT  908

seq1: chr4_129422351_129423137
seq2: B6Ng01-009N09.g_70_856 (reverse)

seq1  TCTTCCCCTCTCCCTCTCTCTCTCCCTCTCCCTCTGCCTCTCTCTCTCTG  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCTCTCCCTCTCTCTCTCCCTCTCCCTCTGCCTCTCTCTCTCTG  50

seq1  CCCCTCTGCTTCTGCCTCTAGAGTTCTAGGATTAAAAGCATGTGCCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGCTTCTGCCTCTAGAGTTCTAGGATTAAAAGCATGTGCCATCA  100

seq1  TAGCCACATGAAAAAGATGTCTAAAATGTTAATTTGTAAATTTGTATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACATGAAAAAGATGTCTAAAATGTTAATTTGTAAATTTGTATCTC  150

seq1  TTTTCTAGTCACCTAACTACTTGTGTCTAGCATTTGTGCTTGAATCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGTCACCTAACTACTTGTGTCTAGCATTTGTGCTTGAATCACTT  200

seq1  ATCAAAGCTAGCCAAAGAAAGAATTGCAAAAAGGCCATCCCCCAATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCTAGCCAAAGAAAGAATTGCAAAAAGGCCATCCCCCAATATCT  250

seq1  CGCCTTGATGTATTCATTACCAATAGGCAATCAGGTTAAAGTTTTCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTGATGTATTCATTACCAATAGGCAATCAGGTTAAAGTTTTCTGAA  300

seq1  TTTCCCTTATCTGCCCAAAGACAGGGCTTTCAATAAGAACTCACTAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTATCTGCCCAAAGACAGGGCTTTCAATAAGAACTCACTAGTGA  350

seq1  GCCGGGCATGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGCATGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGG  400

seq1  CAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  450

seq1  GGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAACAAA  500

seq1  CAAACAAAAAAGAATTCACTAGTGGGGCTGGAGAACTGGCTCAGCAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAAGAATTCACTAGTGGGGCTGGAGAACTGGCTCAGCAGTTA  550

seq1  AGAGCACCGACTGCTCTTCCGAAAGTCCTGAGTTCAAATCCCAGTAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCGACTGCTCTTCCGAAAGTCCTGAGTTCAAATCCCAGTAACTA  600

seq1  CATGGTGGCTCACAAACATTGGTAATGAGATCTGACACCCTCTCCTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCTCACAAACATTGGTAATGAGATCTGACACCCTCTCCTGGTG  650

seq1  TGTCTAAAGACAGCTACAGTGTACTTACACATAATCATAAATTTTTAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAAGACAGCTACAGTGTACTTACACATAATCATAAATTTTTAGGC  700

seq1  TGGAGCGAGCAGAGTCCTGAGTTCAATTCCCAGCTACAGTGTACTCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCGAGCAGAGTCCTGAGTTCAATTCCCAGCTACAGTGTACTCATAT  750

seq1  AAATAAAATAAATCTTAAAAAGAAAAAGAAAGAATTC  787
      |||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAAATCTTAAAAAGAAAAAGAAAGAATTC  787