BAC Information

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BAC

Clone NameB6Ng01-009N18
Chromosome4 (Build37)
Map Location 56,154,635 - 56,234,657
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009N18.bB6Ng01-009N18.g
ACCDH845689DH845690
length9191,167
definitionDH845689|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N18, 5' end.DH845690|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,154,635 - 56,155,550)(56,233,481 - 56,234,657)
sequence
gaattcttgcagctaaggtcaaaactaaggagtgttgcacaaagcagtcc
atggcaacttattcacattgtcagggctttttctaaggaactaaaagttc
atttgattaaaataggagaatagatagtaaaattattacaaaagagcacc
caggtcaacatgtcaacatgccatcattaaaggtccctattatatggtca
atggatgctaaattttcatcaagatgagggtcctgataggatgccaaaat
ctaaatagtaaactctaaacacttattggactcagtaggatgtgtgtgtg
tgtgtgtgtgtgtgcacatgtgtgcaagtacggaaaaataagtatatgca
gaagaggacaattaaaagaggagaggaaaatgtggtaggggaacatggga
gaagttggagtgggaaagagaaggaccaaaagaatgtaaatagtgtactc
atataaaattctccaaaaaaaaaaaatggttcatgaattttaaaagaaaa
tgatagcaaaatactgtggattgtgtatggtgggtagcaactaggtagag
aacttccctgagaccagtggagcactggtccaaagctggacctgctgaac
acagcagcataagcaaccttcaggggttcactgtagggcatacaaccaac
tctccactgaagaaacaacgataaaatattttacatgcagtaacttgacc
caaagtcatttgcattccctaaaaccatgtggtccctatcactcaccatc
cctcttctccaggcttgtgctaggctgtaaatgtttttagaaaaggattc
cagacaaacacaccctggtgtttggttggagttcagaagtccctttaaag
aacgatgaacagatcttttccttgttcctgctacacaaacttcctggcta
tgctctatttttgggatag
gaattctattttcttcttcctctacctccctacctctctttctgtcctgg
cccgatcacatcctctttaatctttctaaatggatattatagcctcaggg
actccaagaagattcaaggataaacaggagctaagcccctgaaatgccag
gctccctccaatgccatcttctccgcacaaaagccctggttagaaatgcc
atcaagagagcagcctctgagggttctttgtcaaactcaaggtttgtgtg
accctctgggaaagggttctcttgaccttgatttttttttatgtgtaagg
aaagggctgaagggcaggggggccctgcctgaagtttctggagccttaca
atctaaacctctaggctggctggctctaggacctggggcaagtcctttgt
ggatttgtgctcacacagtctgggtctaaaggcttcttccaggtaggagt
gaagcaatgtctaactgaacagaagagagtttactgcaaaggcccaaaag
agactgggaactccacagagttgtcctaccttccatgtggaaaggggaga
gttaacctattactgtgatcatcaaaggagacaaaggatgaatggaattt
gcctagattatggtctctttaaaactagcattgtttaatttctcctgaag
ctaaaaccacagtgaagaaaggcttggttaaaaaatgggacagaaagagg
agatgcagagctccttttctgtgtacaactccagtagatccaacttcaca
aagacaaaggcactgcactaattcaacttgagacttagctattcagtgtc
ctggtgtttcatcgtattgtctagatacattatgtccctatgttgcaaat
aattgatgttcagaggtcatcaagactgttgttgagggtcgggccatctt
tcagataaatatgtgcccctcctcctccgatctagttgtaaaatttttgt
gtccttcttcaccacagaagtgactgatgactgatgcacaacacatgaaa
gagaaacgtcgacctgatgggttgcttcagattaatgacctagaggtgca
agggacgtttacacggcctctgatgcgcccttgctgttgcatgcacaata
tgtacagctgattcactctatctcactgaaatatgaaggtctctgtcagt
aagaaaacctgaccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_56154635_56155550
seq2: B6Ng01-009N18.b_48_966

seq1  GAATTCTTGCAGCTAAGGTCAAAACTAAGGAGTGTTGCACAAAGCAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCAGCTAAGGTCAAAACTAAGGAGTGTTGCACAAAGCAGTCC  50

seq1  ATGGCAACTTATTCACATTGTCAGGGCTTTTTCTAAGGAACTAAAAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAACTTATTCACATTGTCAGGGCTTTTTCTAAGGAACTAAAAGTTC  100

seq1  ATTTGATTAAAATAGGAGAATAGATAGTAAAATTATTACAAAAGAGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTAAAATAGGAGAATAGATAGTAAAATTATTACAAAAGAGCACC  150

seq1  CAGGTCAACATGTCAACATGCCATCATTAAAGGTCCCTATTATATGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAACATGTCAACATGCCATCATTAAAGGTCCCTATTATATGGTCA  200

seq1  ATGGATGCTAAATTTTCATCAAGATGAGGGTCCTGATAGGATGCCAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGCTAAATTTTCATCAAGATGAGGGTCCTGATAGGATGCCAAAAT  250

seq1  CTAAATAGTAAACTCTAAACACTTATTGGACTCAGTAGGATGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAGTAAACTCTAAACACTTATTGGACTCAGTAGGATGTGTGTGTG  300

seq1  TGTGTGTGTGTGTGCACATGTGTGCAAGTACGGAAAAATAAGTATATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGCACATGTGTGCAAGTACGGAAAAATAAGTATATGCA  350

seq1  GAAGAGGACAATTAAAAGAGGAGAGGAAAATGTGGTAGGGGAACATGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGACAATTAAAAGAGGAGAGGAAAATGTGGTAGGGGAACATGGGA  400

seq1  GAAGTTGGAGTGGGAAAGAGAAGGACCAAAAGAATGTAAATAGTGTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGAGTGGGAAAGAGAAGGACCAAAAGAATGTAAATAGTGTACTC  450

seq1  ATATAAAATTCTCCAAAAAAAAAAAATGGTTCATGAATTTTAAAAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATTCTCCAAAAAAAAAAAATGGTTCATGAATTTTAAAAGAAAA  500

seq1  TGATAGCAAAATACTGTGGATTGTGTATGGTGGGTAGCAACTAGGTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCAAAATACTGTGGATTGTGTATGGTGGGTAGCAACTAGGTAGAG  550

seq1  AACTTCCCTGAGACCAGTGGAGCACTGGTCCAAAGCTGGACCTGCTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCTGAGACCAGTGGAGCACTGGTCCAAAGCTGGACCTGCTGAAC  600

seq1  ACAGCAGCATAAGCAACCTTCAGGGGTTCACTGTAGGGCATACAACCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCATAAGCAACCTTCAGGGGTTCACTGTAGGGCATACAACCAAC  650

seq1  TCTCCACTGAAGAAACAACGATAAAATATTTTACATGCAGTAACTTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTGAAGAAACAACGATAAAATATTTTACATGCAGTAACTTGACC  700

seq1  CAAAGTCATTTGCATT-CCTAAAACCATGTGGTCCCTATCACTCACCATC  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAAAGTCATTTGCATTCCCTAAAACCATGTGGTCCCTATCACTCACCATC  750

seq1  CCTCTTCTCCAGGCTTGTGCTAGGCTGTAAATG-TTTTAGAAAAGGATTC  798
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTCTTCTCCAGGCTTGTGCTAGGCTGTAAATGTTTTTAGAAAAGGATTC  800

seq1  CAGACAAACACACCCTGGTGTTTGGTTGGAGTTCAG-AGTCCCTTTAAAG  847
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGACAAACACACCCTGGTGTTTGGTTGGAGTTCAGAAGTCCCTTTAAAG  850

seq1  AACGATGAACAGATCTTTTCCTTGTT-CTGCTACACAAAACTCCCTGGCT  896
      |||||||||||||||||||||||||| ||||||||| ||||| |||||||
seq2  AACGATGAACAGATCTTTTCCTTGTTCCTGCTACAC-AAACTTCCTGGCT  899

seq1  ATGCTCATATTTCAGGATAG  916
      ||||||   |||  ||||||
seq2  ATGCTCTATTTTTGGGATAG  919

seq1: chr4_56233481_56234657
seq2: B6Ng01-009N18.g_67_1233 (reverse)

seq1  CAAGTTCAGGTTTTTCTTTACTG-CAGAGACACTTCATTATTCAGTGAGA  49
      |||| |||||||||   |||||| ||||||| ||||||  ||||||||||
seq2  CAAGGTCAGGTTTT--CTTACTGACAGAGAC-CTTCATATTTCAGTGAGA  47

seq1  T-GAGTGAATCAGCCTGTGACATATTGTTGCATGGCAACAGCAAAGGGCG  98
      | ||||||||||| |||| |||||||| ||||| |||||||| |||||||
seq2  TAGAGTGAATCAG-CTGT-ACATATTG-TGCAT-GCAACAGC-AAGGGCG  92

seq1  CATCAGAGGCCGTGTAAACGTCCCTTGCCACCTCTAGGTCATTAATCTGG  148
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  CATCAGAGGCCGTGTAAACGTCCCTTG-CACCTCTAGGTCATTAATCTGA  141

seq1  AGCAACCCATCGGGTCGACGTTTCTCTTTCCATGTGTTGTGCATCAGTCA  198
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  AGCAACCCATCAGGTCGACGTTTCTCTTT-CATGTGTTGTGCATCAGTCA  190

seq1  TCAGTCACTTCTGTGGTGAAGAAGGAACACAAAAAATTTTACAACTAGAT  248
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  TCAGTCACTTCTGTGGTGAAGAAGG-ACAC-AAAAATTTTACAACTAGAT  238

seq1  CGGAGGAGGGGGGGCACATATTTATCTGAAAGATGGCCCGACCCTCAACA  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGAGGAGGGGCACATATTTATCTGAAAGATGGCCCGACCCTCAACA  288

seq1  ACAGTCTTGATGACCTCTGAACATCAATTATTTGCAACATAGGGACATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTGATGACCTCTGAACATCAATTATTTGCAACATAGGGACATAA  338

seq1  TGTATCTAGACAATACGATGAAACACCAGGACACTGAATAGCTAAGTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTAGACAATACGATGAAACACCAGGACACTGAATAGCTAAGTCTC  388

seq1  AAGTTGAATTAGTGCAGTGCCTTTGTCTTTGTGAAGTTGGATCTACTGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAATTAGTGCAGTGCCTTTGTCTTTGTGAAGTTGGATCTACTGGA  438

seq1  GTTGTACACAGAAAAGGAGCTCTGCATCTCCTCTTTCTGTCCCATTTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACACAGAAAAGGAGCTCTGCATCTCCTCTTTCTGTCCCATTTTTT  488

seq1  AACCAAGCCTTTCTTCACTGTGGTTTTAGCTTCAGGAGAAATTAAACAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCCTTTCTTCACTGTGGTTTTAGCTTCAGGAGAAATTAAACAAT  538

seq1  GCTAGTTTTAAAGAGACCATAATCTAGGCAAATTCCATTCATCCTTTGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTTAAAGAGACCATAATCTAGGCAAATTCCATTCATCCTTTGTC  588

seq1  TCCTTTGATGATCACAGTAATAGGTTAACTCTCCCCTTTCCACATGGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGATGATCACAGTAATAGGTTAACTCTCCCCTTTCCACATGGAAG  638

seq1  GTAGGACAACTCTGTGGAGTTCCCAGTCTCTTTTGGGCCTTTGCAGTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACAACTCTGTGGAGTTCCCAGTCTCTTTTGGGCCTTTGCAGTAAA  688

seq1  CTCTCTTCTGTTCAGTTAGACATTGCTTCACTCCTACCTGGAAGAAGCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTGTTCAGTTAGACATTGCTTCACTCCTACCTGGAAGAAGCCT  738

seq1  TTAGACCCAGACTGTGTGAGCACAAATCCACAAAGGACTTGCCCCAGGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCCAGACTGTGTGAGCACAAATCCACAAAGGACTTGCCCCAGGTC  788

seq1  CTAGAGCCAGCCAGCCTAGAGGTTTAGATTGTAAGGCTCCAGAAACTTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCCAGCCAGCCTAGAGGTTTAGATTGTAAGGCTCCAGAAACTTCA  838

seq1  GGCAGGGCCCCCCTGCCCTTCAGCCCTTTCCTTACACATAAAAAAAAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCCCCCCTGCCCTTCAGCCCTTTCCTTACACATAAAAAAAAATC  888

seq1  AAGGTCAAGAGAACCCTTTCCCAGAGGGTCACACAAACCTTGAGTTTGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAAGAGAACCCTTTCCCAGAGGGTCACACAAACCTTGAGTTTGAC  938

seq1  AAAGAACCCTCAGAGGCTGCTCTCTTGATGGCATTTCTAACCAGGGCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCCTCAGAGGCTGCTCTCTTGATGGCATTTCTAACCAGGGCTTT  988

seq1  TGTGCGGAGAAGATGGCATTGGAGGGAGCCTGGCATTTCAGGGGCTTAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGAGAAGATGGCATTGGAGGGAGCCTGGCATTTCAGGGGCTTAGC  1038

seq1  TCCTGTTTATCCTTGAATCTTCTTGGAGTCCCTGAGGCTATAATATCCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTATCCTTGAATCTTCTTGGAGTCCCTGAGGCTATAATATCCAT  1088

seq1  TTAGAAAGATTAAAGAGGATGTGATCGGGCCAGGACAGAAAGAGAGGTAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGATTAAAGAGGATGTGATCGGGCCAGGACAGAAAGAGAGGTAG  1138

seq1  GGAGGTAGAGGAAGAAGAAAATAGAATTC  1177
      |||||||||||||||||||||||||||||
seq2  GGAGGTAGAGGAAGAAGAAAATAGAATTC  1167