BAC Information

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BAC

Clone NameB6Ng01-009O18
Chromosome4 (Build37)
Map Location 146,713,012 - 146,714,053
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009O18.bB6Ng01-009O18.g
ACCDH845737DH845738
length1,0481,111
definitionDH845737|Mus musculus domesticus DNA, BAC clone: B6Ng01-009O18, 5' end.DH845738|Mus musculus domesticus DNA, BAC clone: B6Ng01-009O18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatctggtcctccacaagggcagcagagtgtttttaattactga
gctgcctccccaagcctctaaatcacttcttaaaatgcaggaatgtatat
aaactcactggcagcatatccttggcaatctcactaaaactatgatgtag
ctctaaatgtcacacagaaggagcaatgaaaagtacgtacaaaaaaaaaa
aaaaaagactggagcgggacacttagagctagcttcaaagcacaaggccc
tctcctggcctctgcaggtacctgtacttgtgtatgtgtgtgtgtgtgtg
tgtatttgtggcatgtacacatttgtatgcatatacatatgtgtgtggta
tgtttgtgtgcatttacatgtgtatgtgcagtgtgtacagtgtatgtttg
catgtgtattagcagtgtggtgtgcatgtgtgcatgtatgtttctgtgtg
taggtatattatgtgcagcatgtgtgtgtgtatgcgtacatgcgtgtatg
tgtccctgtgtatataacaaaggtaaccaaaaaatcttttttaaaaatta
gttaggctggagatatggctcagtgggtgggagcactgacagttctgcaa
gaggttctgagttcaagttcagcaaccgaatggtggctcacaaccatttg
tattgggatctgatatcctcttatggtgtatctgaagagagtgacagtgc
acacagatacataaaaataaataaatctttaaaaagctgagtcaaaaata
aatcctatctcaaaaataaaaagttgttttggctctattggtaaagaacc
tgacaaagcctgactgcctgaggtttggatcctcaaacctacataaaagg
ctggacccagctggaggtttggcccactggtttaagagcatcttgttcct
cctgcagagaacctggttaaactctctgcactcgcatgacttgttccaac
ggggatatgatggcctttcccgacttcctaccaaacctgcaccgttcagg
taaaccattcataaacttgaaacaaagaaaaaggaataagtaaacgaa
gaattctgtttagctctgtatcacatttttaaaattgattatttggtttg
ttggtggctgacttctcgggtactttatatattttggatagtagcccact
gtcatatgtagggttggtgaaggtcttttcccattctgttatctgttgtt
ttgtcttatttacaatatatttgccttacagaagcctttcagcttcaaag
gttcccacttattaatagtttgtcttacaacctgagccattggtgttctg
ttcagaaagttgtctcctatacccatgagttcaagattattccccacgtt
cttttccattagacttagtgtatccagctttatattaaggtctttgatcc
ccttggatttgaattttgtgcatggtggcagatatgtatctatttacatt
cttctacatgctgacattcaattaagtcagcaccattttttgaagatact
ttctttttccattgtttgggtttgacatttttgtcaaaagcaagtccttt
tcaggctccatcttacacccatcagaattgctaagataaaaaaaagttag
aatatgctgctgaggatgtggagcaaggggaacaactctttcattgctgg
tggcagtgaaacttattcaaccacttggaaaaataaattgtgtgtgtgtg
tgtgtgtgtgtgtgtgttcgcagaaaaacggaagaagttctacctaaaga
cccagctataccactaatgagcatatacccaaatgatgctccaatatctc
acaaaacacttgctacactatgttcatagaagccttattcataataggca
gaactggaaagatgtctctcactgaagagtagataaggagaatgtggtac
atctacacaatggaatttctattcagctattaataccaagacatcacgaa
tttgcaggtaaatggatgtaacttgagatatcatcctgagtgagtactta
gtcaaacacatgatgacatgtacttctctaaagtgatattagccaaaata
caggtagatgttacattcataaaccaagaaacttacaagaggatgaccga
ggaagaagtttgatctccctaatgagaaaaaatgtcctagagaagatgta
ggaggtgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146713012_146714053
seq2: B6Ng01-009O18.b_49_1084

seq1  GAATTCAATCTGGTCCTCCACAAGGGCAGCAGAGTGTTTTTAATTACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTGGTCCTCCACAAGGGCAGCAGAGTGTTTTTAATTACTGA  50

seq1  GCTGCCTCCCCAAGCCTCTAAATCACTTCTTAAAATGCAGGAATGTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCCCCAAGCCTCTAAATCACTTCTTAAAATGCAGGAATGTATAT  100

seq1  AAACTCACTGGCAGCATATCCTTGGCAATCTCACTAAAACTATGATGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACTGGCAGCATATCCTTGGCAATCTCACTAAAACTATGATGTAG  150

seq1  CTCTAAATGTCACACAGAAGGAGCAATGAAAAGTACGTACAAAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAATGTCACACAGAAGGAGCAATGAAAAGTACGTACAAAAAAAAAA  200

seq1  AAAAAAGACTGGAGCGGGACACTTAGAGCTAGCTTCAAAGCACAAGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACTGGAGCGGGACACTTAGAGCTAGCTTCAAAGCACAAGGCCC  250

seq1  TCTCCTGGCCTCTGCAGGTACCTGTACTTGTGTATGTGTGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGCCTCTGCAGGTACCTGTACTTGTGTATGTGTGTGTGTGTGTG  300

seq1  TGTATTTGTGGCATGTACACATTTGTATGCATATACATATGTGTGTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTGGCATGTACACATTTGTATGCATATACATATGTGTGTGGTA  350

seq1  TGTTTGTGTGCATTTACATGTGTATGTGCAGTGTGTACAGTGTATGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGCATTTACATGTGTATGTGCAGTGTGTACAGTGTATGTTTG  400

seq1  CATGTGTATTAGCAGTGTGGTGTGCATGTGTGCATGTATGTTTCTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATTAGCAGTGTGGTGTGCATGTGTGCATGTATGTTTCTGTGTG  450

seq1  TAGGTATATTATGTGCAGCATGTGTGTGTGTATGCGTACATGCGTGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATATTATGTGCAGCATGTGTGTGTGTATGCGTACATGCGTGTATG  500

seq1  TGTCCCTGTGTATATAACAAAGGTAACCAAAAAATCTTTTTTAAAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGTGTATATAACAAAGGTAACCAAAAAATCTTTTTTAAAAATTA  550

seq1  GTTAGGCTGGAGATATGGCTCAGTGGGTGGGAGCACTGACAGTTCTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCTGGAGATATGGCTCAGTGGGTGGGAGCACTGACAGTTCTGCAA  600

seq1  GAGGTTCTGAGTTCAAGTTCAGCAACCGAATGGTGGCTCACAACCATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTGAGTTCAAGTTCAGCAACCGAATGGTGGCTCACAACCATTTG  650

seq1  TATTGGGATCTGATATCCTCTTATGGTGTATCTGAAGAGAGTGACAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGATCTGATATCCTCTTATGGTGTATCTGAAGAGAGTGACAGTGC  700

seq1  ACACAGATACAT-AAAATAAATAAATCTTTAAAAAGCTGAGTC-AAAATA  748
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  ACACAGATACATAAAAATAAATAAATCTTTAAAAAGCTGAGTCAAAAATA  750

seq1  AATCCTATCTCAAAAATAAAAAGTTGTTTTGGCTCTATTGGTAAAGAACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTATCTCAAAAATAAAAAGTTGTTTTGGCTCTATTGGTAAAGAACC  800

seq1  TGACAAAGCCTGACTGCCTGAGGTTTGGATCCTCAGAACCTACATAAAAG  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGACAAAGCCTGACTGCCTGAGGTTTGGATCCTCA-AACCTACATAAAAG  849

seq1  GCTGGACCCAGGCTGGAGGGTTGGCCCACTGG-TTAAGAGCA-CCTGTTT  896
      |||||||||| |||||||| |||||||||||| ||||||||| | |||| 
seq2  GCTGGACCCA-GCTGGAGGTTTGGCCCACTGGTTTAAGAGCATCTTGTTC  898

seq1  CTCCTGCAGAGAACCTGGGTCAACTCTCTGCACTCGCATGAC-TGTTCAC  945
      |||||||||||||||||| | ||||||||||||||||||||| ||||| |
seq2  CTCCTGCAGAGAACCTGGTTAAACTCTCTGCACTCGCATGACTTGTTC-C  947

seq1  AACGGGGGATATGATGGCCTTTTCTGACCTCCTAACAAACCTGCACACGT  995
      ||| |||||||||||||||||| | ||| ||||| ||||||||||| |||
seq2  AAC-GGGGATATGATGGCCTTTCCCGACTTCCTACCAAACCTGCAC-CGT  995

seq1  ACAGGTAAAACACATTCATAAACTTTAAAAAACAAAAGAAAAAGGAA  1042
       ||||||||   ||||||||||||| |||     |||||||||||||
seq2  TCAGGTAAA--CCATTCATAAACTTGAAA----CAAAGAAAAAGGAA  1036