BAC Information

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BAC

Clone NameB6Ng01-009O24
Chromosome4 (Build37)
Map Location 122,524,757 - 122,693,309
singlet/doubletdoublet
Overlap genePpt1, Cap1, Mfsd2, Mycl1
Upstream geneLOC666931, LOC666937, LOC633269, LOC633279, 9530002B09Rik
Downstream geneTrit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009O24.bB6Ng01-009O24.g
ACCDH845747DH845748
length5441,106
definitionDH845747|Mus musculus domesticus DNA, BAC clone: B6Ng01-009O24, 5' end.DH845748|Mus musculus domesticus DNA, BAC clone: B6Ng01-009O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,524,757 - 122,525,306)(122,692,211 - 122,693,309)
sequence
acagggatccacctgcctctgcctcccgcttgctggaattaaaggtgtgt
gccactgcccagcaattttttatttaattttctaaaagctttattttgta
tttatgtattatattcacatcatttccagccctccaacctctagctcctc
ccacttcctcctaaattcattgcctcttctttaattatcatcagtgtgtg
cgctcgcgcatattgttggggataaaacccagggtctccacgtgtgaagc
aagaactctgccacaaagctgcacccgagctcacatttggccttctgaac
ccaaggtgctccatatctgtggattcaaagctctacagctgagaactatt
ctgggaaaggcatttgtgtgtgcctagaatcccagaatttaggggttggg
gataggaggattgagtttgagttcagcctgggctttatttgcccctaccc
tatcttcataaaaagataaaggggaggggtggcaagggagggcaaagaaa
agtattcaagaaaccattgaatctgtccagttaatataaagact
gaattccacactcatttagacacaatcagaaagcaggacaaagctctgcg
ttggcataaagcagtcaagagataggcttaaaagcaaaagaacaagcaag
tgaatgacaacccaaaaattagaagaggaagcagaagaaaatcaaagggt
aaagcagatacaagtgagggaaagaaaaatcagaatcaaggatggccaga
cttcaagattccacacaccactttgagaaatggctttaagaatccagaga
gatggtttaacatgtaaagttgctggcagccagatctgatgacctgagtt
caatctccaggatccgcatgtggaaggagagagctgatgctgacctctgt
acacacacacacacacacacacacacacacacacacacacacaccacaca
cactgaagtttaaaattaagaaagaatggttatggaacccgatgaaccta
gattcaaattccagctctcagacttatcagctgagagctgattaattctc
atcagaattaattccattagcagcatttttttttctctttgtctgaagac
tgaacccaggccccccctgggtgctgaatatacactctagcactgagctg
agcacacttcagacccttacttcacctcttaacctcagcaattttatctt
tccattcttccaaggattgccataaggaaaaggtgaaataatgtctggaa
agtgcttgcttcaaatgcactggcacataacaaccaccatttgttaaaca
gtttgtgttattataattgtacaatcccatctgcctctcctaaataagta
agagcaaagctctaagggcagagaatcttttcataacgtgtaaagatgct
ttaaatacctccttctgctaatcttctagctagttgggcagtttaagggg
tctgaggatgcagtttagtggtagagcatttgcttagtcagcatgaggct
ctggtttcagtcagcacttgggatgggggcgggggcataagttgcttttt
cttctgagactgcttcggtctagcttcctagtaggcctcgcagtagtctg
gaatgttttgtaatgttggtggcatgatgcaacatgaagaaggtgcctca
ccatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_122524757_122525306
seq2: B6Ng01-009O24.b_48_597

seq1  GAATTCACAGGGATCCACCTGCCTCTGCCTCCCGCTTGCTGGAATTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGGATCCACCTGCCTCTGCCTCCCGCTTGCTGGAATTAAAG  50

seq1  GTGTGTGCCACTGCCCAGCAATTTTTTATTTAATTTTCTAAAAGCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCCACTGCCCAGCAATTTTTTATTTAATTTTCTAAAAGCTTTAT  100

seq1  TTTGTATTTATGTATTATATTCACATCATTTCCAGCCCTCCAACCTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTATGTATTATATTCACATCATTTCCAGCCCTCCAACCTCTAG  150

seq1  CTCCTCCCACTTCCTCCTAAATTCATTGCCTCTTCTTTAATTATCATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCACTTCCTCCTAAATTCATTGCCTCTTCTTTAATTATCATCAG  200

seq1  TGTGTGCGCTCGCGCATATTGTTGGGGATAAAACCCAGGGTCTCCACGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCGCTCGCGCATATTGTTGGGGATAAAACCCAGGGTCTCCACGTG  250

seq1  TGAAGCAAGAACTCTGCCACAAAGCTGCACCCGAGCTCACATTTGGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAGAACTCTGCCACAAAGCTGCACCCGAGCTCACATTTGGCCTT  300

seq1  CTGAACCCAAGGTGCTCCATATCTGTGGATTCAAAGCTCTACAGCTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCAAGGTGCTCCATATCTGTGGATTCAAAGCTCTACAGCTGAGA  350

seq1  ACTATTCTGGGAAAGGCATTTGTGTGTGCCTAGAATCCCAGAATTTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTGGGAAAGGCATTTGTGTGTGCCTAGAATCCCAGAATTTAGGG  400

seq1  GTTGGGGATAGGAGGATTGAGTTTGAGTTCAGCCTGGGCTTTATTAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTGGGGATAGGAGGATTGAGTTTGAGTTCAGCCTGGGCTTTATTTGCCC  450

seq1  CTACCCTATCTTCATAAAAAGAGAAAGGGGAGGGGTGGCAAGGGAGGGCA  500
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTACCCTATCTTCATAAAAAGATAAAGGGGAGGGGTGGCAAGGGAGGGCA  500

seq1  GAGAAAAGTATTCAAGAAACCATTGAATCTGTACTGTTAATATACAGACT  550
       ||||||||||||||||||||||||||||||| | ||||||||| |||||
seq2  AAGAAAAGTATTCAAGAAACCATTGAATCTGTCCAGTTAATATAAAGACT  550

seq1: chr4_122692211_122693309
seq2: B6Ng01-009O24.g_70_1175 (reverse)

seq1  CCATGCTGAGGCACC-TCCTCCTGCTGCATCATGCCACC-ACATTACAAA  48
      ||||| ||||||||| || || || |||||||||||||| ||||||||||
seq2  CCATGGTGAGGCACCTTCTTCATGTTGCATCATGCCACCAACATTACAAA  50

seq1  ACATATCAGACTACT-CGTGGCTTTACCTAGG-AGCTAGACCGAAGCAGT  96
      ||||  ||||||||| || ||| |   ||||| |||||||||||||||||
seq2  ACATTCCAGACTACTGCGAGGCCT--ACTAGGAAGCTAGACCGAAGCAGT  98

seq1  CTCAG-AGAAAAAGC-ACTTATGCCCCCGCCCCCATCCCAAGTGCTGACT  144
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGAAAAAGCAACTTATGCCCCCGCCCCCATCCCAAGTGCTGACT  148

seq1  GAACCCAGAGCCTCATGCTGACTAAGCAAATGCTCTACCACTAAACCTGC  194
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAAACCAGAGCCTCATGCTGACTAAGCAAATGCTCTACCACTAAA-CTGC  197

seq1  ATCCTCAGACCCCTTAAACTGCCCAACTAGCTAG-AGGTTAGCAGAAGG-  242
      |||||||||||||||||||||||||||||||||| || ||||||||||| 
seq2  ATCCTCAGACCCCTTAAACTGCCCAACTAGCTAGAAGATTAGCAGAAGGA  247

seq1  GGTATTT-AAGCATCTTTACACGTTATTGAAAGATTCTCTGCCCTTAGGC  291
      ||||||| |||||||||||||||||||  |||||||||||||||||||  
seq2  GGTATTTAAAGCATCTTTACACGTTATGAAAAGATTCTCTGCCCTTAGAG  297

seq1  TTTTGCTCTTACTTATTTAGG-GAGGCAGATGGGATTGTACAATTATAAT  340
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTTGCTCTTACTTATTTAGGAGAGGCAGATGGGATTGTACAATTATAAT  347

seq1  AACACAAACTGTTTAACAAATGGTGGTTGTTATGTGCCAGTGCATTTGAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAACTGTTTAACAAATGGTGGTTGTTATGTGCCAGTGCATTTGAA  397

seq1  GCAAGCACTTTCCAGACATTATTTCACCTTTTCCTTATGGCAATCCTTGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACTTTCCAGACATTATTTCACCTTTTCCTTATGGCAATCCTTGG  447

seq1  AAGAATGGAAAGATAAAATTGCTGAGGTTAAGAGGTGAAGTAAGGGTCTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGAAAGATAAAATTGCTGAGGTTAAGAGGTGAAGTAAGGGTCTG  497

seq1  AAGTGTGCTCAGCTCAGTGCTAGAGTGTATATTCAGCACCCAGGGGGGGC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGCTCAGCTCAGTGCTAGAGTGTATATTCAGCACCCAGGGGGGGC  547

seq1  CTGGGTTCAGTCTTCAGACAAAGAGAAAAAAAAATGCTGCTAATGGAATT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCAGTCTTCAGACAAAGAGAAAAAAAAATGCTGCTAATGGAATT  597

seq1  AATTCTGATGAGAATTAATCAGCTCTCAGCTGATAAGTCTGAGAGCTGGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGATGAGAATTAATCAGCTCTCAGCTGATAAGTCTGAGAGCTGGA  647

seq1  ATTTGAATCTAGGTTCATCGGGTTCCATAACCATTCTTTCTTAATTTTAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATCTAGGTTCATCGGGTTCCATAACCATTCTTTCTTAATTTTAA  697

seq1  ACTTCAGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  747

seq1  TGTGTGTGTACAGAGGTCAGCATCAGCTCTCTCCTTCCACATGCGGATCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTACAGAGGTCAGCATCAGCTCTCTCCTTCCACATGCGGATCC  797

seq1  TGGAGATTGAACTCAGGTCATCAGATCTGGCTGCCAGCAACTTTACATGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATTGAACTCAGGTCATCAGATCTGGCTGCCAGCAACTTTACATGT  847

seq1  TAAACCATCTCTCTGGATTCTTAAAGCCATTTCTCAAAGTGGTGTGTGGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATCTCTCTGGATTCTTAAAGCCATTTCTCAAAGTGGTGTGTGGA  897

seq1  ATCTTGAAGTCTGGCCATCCTTGATTCTGATTTTTCTTTCCCTCACTTGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAAGTCTGGCCATCCTTGATTCTGATTTTTCTTTCCCTCACTTGT  947

seq1  ATCTGCTTTACCCTTTGATTTTCTTCTGCTTCCTCTTCTAATTTTTGGGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTTACCCTTTGATTTTCTTCTGCTTCCTCTTCTAATTTTTGGGT  997

seq1  TGTCATTCACTTGCTTGTTCTTTTGCTTTTAAGCCTATCTCTTGACTGCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTCACTTGCTTGTTCTTTTGCTTTTAAGCCTATCTCTTGACTGCT  1047

seq1  TTATGCCAACGCAGAGCTTTGTCCTGCTTTCTGATTGTGTCTAAATGAGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCAACGCAGAGCTTTGTCCTGCTTTCTGATTGTGTCTAAATGAGT  1097

seq1  GTGGAATTC  1099
      |||||||||
seq2  GTGGAATTC  1106