BAC Information

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BAC

Clone NameB6Ng01-009P04
Chromosome4 (Build37)
Map Location 19,938,139 - 20,072,970
singlet/doubletdoublet
Overlap geneTtpa, LOC667301, EG664800
Upstream geneLOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282
Downstream geneE130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009P04.bB6Ng01-009P04.g
ACCDH845755DH845756
length6831,073
definitionDH845755|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P04, 5' end.DH845756|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,072,290 - 20,072,970)(19,938,139 - 19,939,211)
sequence
gaattcaatagtcggagaaaaatgtgttatcaagagaagtacattgatat
ccactgtagccctgttgggagacagggatttgagactgtgtctcaagagg
ggtaaacgtcataattttatggggaagtgtataaaaactcctcagaaccg
tttgcttcagttcaaaaatggaatttttagaaattaagacatcagctggg
cgtggtggcacatgcctttaatcccagcactcgggaagcagaggcaggcg
gatttctgagttcgaggccagcctggtctacaaagtgagttccaggacaa
ccaggactacacagagaaaccctgtcacgaaaaaaaaaaaaaatcaaaat
gtatctttagaatctaaccagatagagaaagtaagagagacagagagaga
tcataaggcatgtggtctaaaggtttaaagtttttgttgttattgtcatt
tttacttttcctggtggttgtatataaacttcctaggaagttaatcagtg
aatcaagaataaccctaattatgatttagaccttaaagttctctccaaag
tcaagtgtctctacctgatgagagtgttaggaaaagatgagaggggggag
gagactcgagtaatagggggtgtaaatgtgatgaaagtacatcgtgatat
atgggaacctggtgttttatagtttcatatctt
gaattctcattgttctggcttttgagcatacgataaattaatattttcta
gtcttaatacctattatgcttatgtagtgacaggcactttgttgaactgt
ttgtatagactctctgttatttttttcaaggaactgagatatagagtcat
cagttctcacatagctgttaagctgtagtatagggctttgaagttggttg
aagctcaggagagtctatgcttctggaagagaacagtgagcatgaaaaat
agcccccatctgctcaacaagcaaactgtctagttccttacatttatgta
ttaagctgtgatggttacattcggtttgttccctcaagacttatatcgaa
gttcagttcatacagtgaagtactaacagggaagaaatgaaaagccaggt
ggtagcacacacatttaatcccagcactgggtaggcagaggtaggcagat
ctctgagagttcaaggctagcctggtatacagagtgagctccagacagcc
agctctacacattaaaatactgttttgaaccccctaccattaccagaaaa
ggacagaaatgtaattcaactactgtgtggagggagctttctgggaagaa
ttagtaggtgtggagtattcatgacggaatactgatagtttttataagag
aagaggacacacacacacacacacacacacacacatgcacacacgcacgc
acacacacacacacacacacacacacacacaaacacttgccatataatga
ctggtgttttctgaagactctatcagcaagaaggcatgccaatagcataa
gtgctctactataccttgggctagataggacttcaattctttataatttg
tgtcatttattttactactagcaacaaaataaaatcagcacatatacaga
gttttagtattttatctttatgattttcactagtacttcaggcttttaaa
ttctatggcccttcctgacattactgtcaaactgtagcttcttttcctga
aattatcatagcataatataaatttcattctttaaacagcttagtggaat
acgcccaatttcctcatggcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_20072290_20072970
seq2: B6Ng01-009P04.b_46_727 (reverse)

seq1  AGATATG-AACTGTAAAACACCAGGTT-CCATATATTCACGATGTACTTT  48
      ||||||| |||| |||||||||||||| ||||||| ||||||||||||||
seq2  AGATATGAAACTATAAAACACCAGGTTCCCATATA-TCACGATGTACTTT  49

seq1  CATCACATTTACACCCCCTATTACTCGAGTCTCCTCCCCCCTCTCATCTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATTTACACCCCCTATTACTCGAGTCTCCTCCCCCCTCTCATCTT  99

seq1  TTCCTAACACTCTCATCAGGTAGAGACACTTGACTTTGGAGAGAACTTTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACACTCTCATCAGGTAGAGACACTTGACTTTGGAGAGAACTTTA  149

seq1  AGGTCTAAATCATAATTAGGGTTATTCTTGATTCACTGATTAACTTCCTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTAAATCATAATTAGGGTTATTCTTGATTCACTGATTAACTTCCTA  199

seq1  GGAAGTTTATATACAACCACCAGGAAAAGTAAAAATGACAATAACAACAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTATATACAACCACCAGGAAAAGTAAAAATGACAATAACAACAA  249

seq1  AAACTTTAAACCTTTAGACCACATGCCTTATGATCTCTCTCTGTCTCTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTAAACCTTTAGACCACATGCCTTATGATCTCTCTCTGTCTCTCT  299

seq1  TACTTTCTCTATCTGGTTAGATTCTAAAGATACATTTTGATTTTTTTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTCTATCTGGTTAGATTCTAAAGATACATTTTGATTTTTTTTTT  349

seq1  TTTTCGTGACAGGGTTTCTCTGTGTAGTCCTGGTTGTCCTGGAACTCACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGTGACAGGGTTTCTCTGTGTAGTCCTGGTTGTCCTGGAACTCACT  399

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCTTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCTTCC  449

seq1  CGAGTGCTGGGATTAAAGGCATGTGCCACCACGCCCAGCTGATGTCTTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCTGGGATTAAAGGCATGTGCCACCACGCCCAGCTGATGTCTTAA  499

seq1  TTTCTAAAAATTCCATTTTTGAACTGAAGCAAACGGTTCTGAGGAGTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAAATTCCATTTTTGAACTGAAGCAAACGGTTCTGAGGAGTTTT  549

seq1  TATACACTTCCCCATAAAATTATGACGTTTACCCCTCTTGAGACACAGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTTCCCCATAAAATTATGACGTTTACCCCTCTTGAGACACAGTC  599

seq1  TCAAATCCCTGTCTCCCAACAGGGCTACAGTGGATATCAATGTACTTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCCTGTCTCCCAACAGGGCTACAGTGGATATCAATGTACTTCTC  649

seq1  TTGATAACACATTTTTCTCCGACTATTGAATTC  681
      |||||||||||||||||||||||||||||||||
seq2  TTGATAACACATTTTTCTCCGACTATTGAATTC  682

seq1: chr4_19938139_19939211
seq2: B6Ng01-009P04.g_68_1140

seq1  GAATTCTCATTGTTCTGGCTTTTGAGCATACGATAAATTAATATTTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTGTTCTGGCTTTTGAGCATACGATAAATTAATATTTTCTA  50

seq1  GTCTTAATACCTATTATGCTTATGTAGTGACAGGCACTTTGTTGAACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAATACCTATTATGCTTATGTAGTGACAGGCACTTTGTTGAACTGT  100

seq1  TTGTATAGACTCTCTGTTATTTTTTTCAAGGAACTGAGATATAGAGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGACTCTCTGTTATTTTTTTCAAGGAACTGAGATATAGAGTCAT  150

seq1  CAGTTCTCACATAGCTGTTAAGCTGTAGTATAGGGCTTTGAAGTTGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCACATAGCTGTTAAGCTGTAGTATAGGGCTTTGAAGTTGGTTG  200

seq1  AAGCTCAGGAGAGTCTATGCTTCTGGAAGAGAACAGTGAGCATGAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGGAGAGTCTATGCTTCTGGAAGAGAACAGTGAGCATGAAAAAT  250

seq1  AGCCCCCATCTGCTCAACAAGCAAACTGTCTAGTTCCTTACATTTATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCATCTGCTCAACAAGCAAACTGTCTAGTTCCTTACATTTATGTA  300

seq1  TTAAGCTGTGATGGTTACATTCGGTTTGTTCCCTCAAGACTTATATCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGTGATGGTTACATTCGGTTTGTTCCCTCAAGACTTATATCGAA  350

seq1  GTTCAGTTCATACAGTGAAGTACTAACAGGGAAGAAATGAAAAGCCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTCATACAGTGAAGTACTAACAGGGAAGAAATGAAAAGCCAGGT  400

seq1  GGTAGCACACACATTTAATCCCAGCACTGGGTAGGCAGAGGTAGGCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCACACACATTTAATCCCAGCACTGGGTAGGCAGAGGTAGGCAGAT  450

seq1  CTCTGAGAGTTCAAGGCTAGCCTGGTATACAGAGTGAGCTCCAGACAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAGTTCAAGGCTAGCCTGGTATACAGAGTGAGCTCCAGACAGCC  500

seq1  AGCTCTACACATTAAAATACTGTTTTGAACCCCCTACCATTACCAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTACACATTAAAATACTGTTTTGAACCCCCTACCATTACCAGAAAA  550

seq1  GGACAGAAATGTAATTCAACTACTGTGTGGAGGGAGCTTTCTGGGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAATGTAATTCAACTACTGTGTGGAGGGAGCTTTCTGGGAAGAA  600

seq1  TTAGTAGGTGTGGAGTATTCATGACGGAATACTGATAGTTTTTATAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGGTGTGGAGTATTCATGACGGAATACTGATAGTTTTTATAAGAG  650

seq1  AAGAGGACACACACACACACACACACACACACACATGCACACACGCACGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACACACACACACACACACACACACACACATGCACACACGCACGC  700

seq1  ACACACACACACACACACACACACACACACAAACACTTGCCATATAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAAACACTTGCCATATAATGA  750

seq1  CTGGTGTTTTCTGAAGACTCTATCAGCAAGAAGGCATGCCAATAGCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTTTCTGAAGACTCTATCAGCAAGAAGGCATGCCAATAGCATAA  800

seq1  GTGCTCTACTATACCTTGGGCTAGATA-GACTTCAATTCTTTATAATTTG  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGCTCTACTATACCTTGGGCTAGATAGGACTTCAATTCTTTATAATTTG  850

seq1  TGTCATTTATTTTACTACTAGCAACAAAAT-AAATCAGCACATATACAGA  898
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTCATTTATTTTACTACTAGCAACAAAATAAAATCAGCACATATACAGA  900

seq1  GTTTTAGTATTTTATCTTTATGATTTCCACTAGTACTTCAAGGCTTTTAA  948
      |||||||||||||||||||||||||| |||||||||||| |||||||| |
seq2  GTTTTAGTATTTTATCTTTATGATTTTCACTAGTACTTC-AGGCTTTT-A  948

seq1  AATTCTATGGCCCCTTCCTGACAATTACTGTCAAACTGTAGCTTCTTTTC  998
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  AATTCTATGG-CCCTTCCTGAC-ATTACTGTCAAACTGTAGCTTCTTTTC  996

seq1  CTGAAATTTATCATAGCAT-ATATAAATTTCAATCTTTATACAGCTTAGT  1047
      |||||| |||||||||||| |||||||||||| |||||| ||||||||||
seq2  CTGAAA-TTATCATAGCATAATATAAATTTCATTCTTTAAACAGCTTAGT  1045

seq1  -GAATACGCACAATTT-CTCATGGCTTT  1073
       |||||||| |||||| |||||||||||
seq2  GGAATACGCCCAATTTCCTCATGGCTTT  1073